Query         gi|254780247|ref|YP_003064660.1| 30S ribosomal protein S8 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 129
No_of_seqs    111 out of 2009
Neff          6.5 
Searched_HMMs 33803
Date          Tue May 24 02:30:56 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780247.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >1sei_A Ribosomal protein S8;   99.9 3.5E-24   1E-28  156.1   6.0   62   68-129     1-62  (62)
  2 >1s03_H 30S ribosomal protein   99.9 2.6E-22 7.8E-27  145.6   9.3   69    1-71      3-71  (71)
  3 >2vqe_H 30S ribosomal protein   99.9 8.1E-23 2.4E-27  148.5   6.0   58   72-129     1-58  (58)
  4 >3bbn_H Ribosomal protein S8;   99.9 1.6E-22 4.7E-27  146.8   5.0   58   72-129     1-58  (58)
  5 >2zkq_h 40S ribosomal protein   99.9 1.2E-22 3.4E-27  147.6   3.9   61   66-129     2-62  (62)
  6 >1s03_H 30S ribosomal protein   99.8 1.1E-21 3.3E-26  142.1   5.6   57   72-128     1-57  (58)
  7 >1i6u_A 30S ribosomal protein   99.8 9.8E-22 2.9E-26  142.4   4.3   61   66-129     2-62  (62)
  8 >1sei_A Ribosomal protein S8;   99.8 4.6E-20 1.4E-24  133.0   8.9   66    1-67      3-68  (68)
  9 >1i6u_A 30S ribosomal protein   99.8 7.9E-20 2.3E-24  131.7   8.4   64    1-65      4-68  (68)
 10 >2zkq_h 40S ribosomal protein   99.8 1.8E-19 5.2E-24  129.7   8.0   64    1-65      4-68  (68)
 11 >3bbn_H Ribosomal protein S8;   99.8 1.1E-18 3.2E-23  125.3   7.9   61    1-62      3-63  (63)
 12 >2vqe_H 30S ribosomal protein   99.8 1.1E-18 3.4E-23  125.1   6.5   61    1-62      3-63  (63)
 13 >3iag_C Recombining binding pr  62.2     5.9 0.00017   20.0   2.5   34   53-86    110-147 (262)
 14 >2hgc_A YJCQ protein; SR346, s  44.8     5.5 0.00016   20.1   0.1   53   28-80     31-88  (102)
 15 >3brd_A LIN-12 and GLP-1 pheno  39.0      19 0.00057   17.1   2.1   44   55-98    154-204 (477)
 16 >2esh_A Conserved hypothetical  31.8      38  0.0011   15.4   4.0   36   26-61     48-83  (118)

No 1  
>>1sei_A Ribosomal protein S8; prokaryotic, rRNA-binding; 1.90A {Geobacillus stearothermophilus} (A:69-130)
Probab=99.90  E-value=3.5e-24  Score=156.12  Aligned_cols=62  Identities=42%  Similarity=0.754  Sum_probs=61.2

Q ss_pred             CCEECCCEEEECCCCCEECCHHHCCCHHCCCCEEEEECCCCEECHHHHHHCCCCCEEEEEEC
Q ss_conf             30001416764612120328111711104971899818866003799996499958999989
Q gi|254780247|r   68 ASVIRKIDCVSKPGRRLYSSFKDIPQVCNGLGIMIVTTSKGVMAGHQARECKVGGEVLCSVF  129 (129)
Q Consensus        68 ~~vi~~i~~iSkP~~r~y~~~~~l~~~~~g~G~~IiSTskGimt~~eA~~~~iGGeil~~v~  129 (129)
                      +|+|+++++||||++|+|.++++++++++|+|++|+|||+|||||+||+++++|||+||+||
T Consensus         1 k~vI~~~~~iSkP~~Rvy~~~~~l~~~~~g~g~~iisTskGim~~~eA~~~~iGGevL~~v~   62 (62)
T 1sei_A            1 ERVITGLKRISKPGLRVYVKAHEVPRVLNGLGIAILSTSQGVLTDKEARQKGTGGEIIAYVI   62 (62)
T ss_dssp             SBSCCCEEECCBTTBCCEECGGGCCCCCTTSCEEEEEETTEEEEHHHHHHHTCCEEEEEEEC
T ss_pred             CCCCCCCEECCCCCCEEECCHHHHHHHHHHCEEEEEECCCCCCCHHHHHHCCCCCEEEEEEC
T ss_conf             64323325512356203636435244553340999978997223899998299968999989


No 2  
>>1s03_H 30S ribosomal protein S8; protein-RNA complex, SPC operon, transcription/RNA complex; 2.70A {Escherichia coli} (H:1-71)
Probab=99.87  E-value=2.6e-22  Score=145.60  Aligned_cols=69  Identities=38%  Similarity=0.612  Sum_probs=65.9

Q ss_pred             CCHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHCCCEEEEEEEECCCCEEEEEEECCCCCCCCEE
Q ss_conf             97789999752548857997899517578999999776312100179983487204788721676543000
Q gi|254780247|r    1 MSCLGDMLTRIRNANLRYKPSVVIPFSRLHARVLDVLKTEGYIGEYCEIDAGKGRIQLKVDLKYHNGASVI   71 (129)
Q Consensus         1 mD~iad~lt~IrNA~~~~k~~v~ip~Skl~~~il~iL~~eGyI~~~~~~~~~~~~~~i~v~Lky~~~~~vi   71 (129)
                      |||||||||+||||+++++.+|.+|+||+++++|+||++||||++|++.+++++  .|+|.|||.+++|+|
T Consensus         3 ~D~iaD~ltrIrNA~~~~~~~V~ip~Sk~~~~il~IL~~eGyI~~~~~~~~~~~--~i~V~LkY~~~~pvI   71 (71)
T 1s03_H            3 QDPIADMLTRIRNGQAANKAAVTMPSSKLKVAIANVLKEEGFIEDFKVEGDTKP--ELELTLKYFQGKAVV   71 (71)
T ss_dssp             CCHHHHHHHHHHHHHHTTCSEEEEECCHHHHHHHHHHHHTTSEEEEEEECSSSC--EEEEEECBSSSSBSC
T ss_pred             CCHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHCCCCCCCEEECCCCC--EEEEEEECCCCCEEE
T ss_conf             767999999877388659987996476789999999987681655277138871--699998526997876


No 3  
>>2vqe_H 30S ribosomal protein S8, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} (H:81-138)
Probab=99.87  E-value=8.1e-23  Score=148.48  Aligned_cols=58  Identities=52%  Similarity=0.948  Sum_probs=56.5

Q ss_pred             CCCEEEECCCCCEECCHHHCCCHHCCCCEEEEECCCCEECHHHHHHCCCCCEEEEEEC
Q ss_conf             1416764612120328111711104971899818866003799996499958999989
Q gi|254780247|r   72 RKIDCVSKPGRRLYSSFKDIPQVCNGLGIMIVTTSKGVMAGHQARECKVGGEVLCSVF  129 (129)
Q Consensus        72 ~~i~~iSkP~~r~y~~~~~l~~~~~g~G~~IiSTskGimt~~eA~~~~iGGeil~~v~  129 (129)
                      +.+++|||||+|+|.++++||++.+|+|++|+|||+|||||+||+++++|||+|||||
T Consensus         1 ~~i~riSkpg~R~y~~~~~l~~~~~g~G~~IlSTskGimt~~eA~~~~iGGeiL~~v~   58 (58)
T 2vqe_H            1 HHIRRISKPGRRVYVGVKEIPRVRRGLGIAILSTSKGVLTDREARKLGVGGELICEVW   58 (58)
T ss_dssp             SCEEECSBTTBCCEECGGGCCCGGGGTSEEEEEETTEEEEHHHHHHTTCCEEEEEEEC
T ss_pred             CCCEEECCCCCEEECCCCCCCCCCCCEEEEEEECCCCCEEHHHHHHHCCCCEEEEEEC
T ss_conf             4217954788335644232532149758999968987246999998399977999989


No 4  
>>3bbn_H Ribosomal protein S8; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} (H:77-134)
Probab=99.86  E-value=1.6e-22  Score=146.80  Aligned_cols=58  Identities=41%  Similarity=0.879  Sum_probs=56.5

Q ss_pred             CCCEEEECCCCCEECCHHHCCCHHCCCCEEEEECCCCEECHHHHHHCCCCCEEEEEEC
Q ss_conf             1416764612120328111711104971899818866003799996499958999989
Q gi|254780247|r   72 RKIDCVSKPGRRLYSSFKDIPQVCNGLGIMIVTTSKGVMAGHQARECKVGGEVLCSVF  129 (129)
Q Consensus        72 ~~i~~iSkP~~r~y~~~~~l~~~~~g~G~~IiSTskGimt~~eA~~~~iGGeil~~v~  129 (129)
                      .++++|||||+|+|.++++|+++.+|+|++|+|||+|||||+||+++++|||+|||||
T Consensus         1 ~~i~riSkpg~R~y~~~~~l~k~~~g~G~~IlSTskGim~~~eA~~~~vGGevL~~V~   58 (58)
T 3bbn_H            1 FHLKRVSRPGLRIYSNYQRIPRILGGMGIAILSTSRGIMTDREARLEGIGGEILCYIW   58 (58)
T ss_dssp             SCEEESSBTTBCCEECSSSCCCGGGTTSEEEEEESSSEECTTHHHHHTCCEEEEEEEC
T ss_pred             EEEEEECCCCCCEECCHHHCCCCCCCCEEEEEECCCCEEEHHHHHHHCCCCEEEEEEC
T ss_conf             0278854547001336000663136714999817976367899998099967999989


No 5  
>>2zkq_h 40S ribosomal protein S15AE; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} PDB: 1s1h_H (h:69-130)
Probab=99.86  E-value=1.2e-22  Score=147.59  Aligned_cols=61  Identities=26%  Similarity=0.316  Sum_probs=58.4

Q ss_pred             CCCCEECCCEEEECCCCCEECCHHHCCCHHCCCCEEEEECCCCEECHHHHHHCCCCCEEEEEEC
Q ss_conf             5430001416764612120328111711104971899818866003799996499958999989
Q gi|254780247|r   66 NGASVIRKIDCVSKPGRRLYSSFKDIPQVCNGLGIMIVTTSKGVMAGHQARECKVGGEVLCSVF  129 (129)
Q Consensus        66 ~~~~vi~~i~~iSkP~~r~y~~~~~l~~~~~g~G~~IiSTskGimt~~eA~~~~iGGeil~~v~  129 (129)
                      |++|+|+++++||+|++|+|.+..++|   +|+|++|+|||+|||||+||+++++|||+|||||
T Consensus         2 n~~~~I~~~~rvSkpg~r~y~~~~~~~---~~~G~~IiSTskGvmt~~eA~~~~iGGeiL~~V~   62 (62)
T 2zkq_h            2 NKCGVISPRFDVQLKDLEKWQNNLLPS---RQFGFIVLTTSAGIMDHEEARRKHTGGKILGFFF   62 (62)
T ss_dssp             SCEEECSSCCEECSSTHHHHHHHHCSS---TTCCEEEEEETTEEEEHHHHHHHTCCEEEEEEEC
T ss_pred             CCCCCCCCEEEECCCCCCHHHCCCCCC---CCCEEEEEECCCCCCCHHHHHHHCCCCEEEEEEC
T ss_conf             778975543672565422232444224---8966999968974211299998399962999989


No 6  
>>1s03_H 30S ribosomal protein S8; protein-RNA complex, SPC operon, transcription/RNA complex; 2.70A {Escherichia coli} (H:72-129)
Probab=99.84  E-value=1.1e-21  Score=142.06  Aligned_cols=57  Identities=47%  Similarity=0.878  Sum_probs=55.6

Q ss_pred             CCCEEEECCCCCEECCHHHCCCHHCCCCEEEEECCCCEECHHHHHHCCCCCEEEEEE
Q ss_conf             141676461212032811171110497189981886600379999649995899998
Q gi|254780247|r   72 RKIDCVSKPGRRLYSSFKDIPQVCNGLGIMIVTTSKGVMAGHQARECKVGGEVLCSV  128 (129)
Q Consensus        72 ~~i~~iSkP~~r~y~~~~~l~~~~~g~G~~IiSTskGimt~~eA~~~~iGGeil~~v  128 (129)
                      +++++|||||+|+|.++++||++.+|+|++|+|||+|||||+||+++++|||+||||
T Consensus         1 ~~i~riSkpg~Riy~~~~~l~~~~~g~G~~IlSTskGimt~~eA~~~~vGGevL~~V   57 (58)
T 1s03_H            1 ESIQRVSRPGLRIYKRKDELPKVMAGLGIAVVSTSKGVMTDRAARQAGLGGEIICYV   57 (58)
T ss_dssp             SCEEECSBTTBCCEECGGGSCCSCSSSCEEEEEETTEEEEHHHHHHHTCCEEEEEEE
T ss_pred             CCCEEECCCCCCCCCCHHHHHHCCCCEEEEEECCCCCEEEHHHHHHHCCCCEEEEEE
T ss_conf             174361468832135655543302986899970898657699999829995899998


No 7  
>>1i6u_A 30S ribosomal protein S8P; protein-RNA interactions, ribosome, RNA, X-RAY crystallography; 2.60A {Methanocaldococcus jannaschii} (A:69-130)
Probab=99.84  E-value=9.8e-22  Score=142.38  Aligned_cols=61  Identities=28%  Similarity=0.399  Sum_probs=57.8

Q ss_pred             CCCCEECCCEEEECCCCCEECCHHHCCCHHCCCCEEEEECCCCEECHHHHHHCCCCCEEEEEEC
Q ss_conf             5430001416764612120328111711104971899818866003799996499958999989
Q gi|254780247|r   66 NGASVIRKIDCVSKPGRRLYSSFKDIPQVCNGLGIMIVTTSKGVMAGHQARECKVGGEVLCSVF  129 (129)
Q Consensus        66 ~~~~vi~~i~~iSkP~~r~y~~~~~l~~~~~g~G~~IiSTskGimt~~eA~~~~iGGeil~~v~  129 (129)
                      |++|+|+++++||+|++|+|.+..++|   +|+|++|+|||+|||||+||+++++|||+|||||
T Consensus         2 n~~~~I~~~~~vs~pg~r~y~~~~~~~---~~~G~~IlSTskGimt~~eA~~~~iGGeiL~~vy   62 (62)
T 1i6u_A            2 NKCGAIKPRFPVKKFGYEKFEKRYLPA---RDFGILIVSTTQGVXSHEEAKKRGLGGRLLAYVY   62 (62)
T ss_dssp             SCEEECSSCCEECTTCCHHHHHHHCSS---TTCCEEEEEETTEEEEHHHHHHTTCCEEEEEEEC
T ss_pred             CCCCCCCCEEEECCCCCCCCCCCCCCC---CCCEEEEEECCCCCCCHHHHHHCCCCCEEEEEEC
T ss_conf             679976551684688761145377688---9976999968965357899997399977999989


No 8  
>>1sei_A Ribosomal protein S8; prokaryotic, rRNA-binding; 1.90A {Geobacillus stearothermophilus} (A:1-68)
Probab=99.82  E-value=4.6e-20  Score=132.99  Aligned_cols=66  Identities=35%  Similarity=0.564  Sum_probs=61.9

Q ss_pred             CCHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHCCCEEEEEEEECCCCEEEEEEECCCCCC
Q ss_conf             9778999975254885799789951757899999977631210017998348720478872167654
Q gi|254780247|r    1 MSCLGDMLTRIRNANLRYKPSVVIPFSRLHARVLDVLKTEGYIGEYCEIDAGKGRIQLKVDLKYHNG   67 (129)
Q Consensus         1 mD~iad~lt~IrNA~~~~k~~v~ip~Skl~~~il~iL~~eGyI~~~~~~~~~~~~~~i~v~Lky~~~   67 (129)
                      ||||||+||+||||+++++.+|.+|+|+++.++|+||++||||++|++.++++.+ .+.|.|||..+
T Consensus         3 ~D~iaD~ltrIrNA~~~~~~~V~ip~Sk~~~~il~IL~~eGyI~~~~~~~~~~~~-~~~V~LKy~~N   68 (68)
T 1sei_A            3 TDPIADMLTAIRNANMVRHEKLEVPASKIKREIAEILKREGFIRDYEYIEDNKQG-ILRIFLKYGPN   68 (68)
T ss_dssp             SHHHHHHHHHHHHHHHTTCSEEEEECCHHHHHHHHHHHHTTSEEEEEEEESSSCE-EEEEEECBSSS
T ss_pred             CCHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCC-EEEEEECCCCC
T ss_conf             6349999998787987699889961758999999999871832014786046775-59999114577


No 9  
>>1i6u_A 30S ribosomal protein S8P; protein-RNA interactions, ribosome, RNA, X-RAY crystallography; 2.60A {Methanocaldococcus jannaschii} (A:1-68)
Probab=99.81  E-value=7.9e-20  Score=131.66  Aligned_cols=64  Identities=39%  Similarity=0.533  Sum_probs=60.1

Q ss_pred             CCHHHHHHHHHHHHHHCCCCEEEE-ECCHHHHHHHHHHHHCCCEEEEEEEECCCCEEEEEEECCCC
Q ss_conf             977899997525488579978995-17578999999776312100179983487204788721676
Q gi|254780247|r    1 MSCLGDMLTRIRNANLRYKPSVVI-PFSRLHARVLDVLKTEGYIGEYCEIDAGKGRIQLKVDLKYH   65 (129)
Q Consensus         1 mD~iad~lt~IrNA~~~~k~~v~i-p~Skl~~~il~iL~~eGyI~~~~~~~~~~~~~~i~v~Lky~   65 (129)
                      ||||||+||+||||+++++.+|.+ |+||++.+||+||++||||++|+..++++.+ .+.|+|||.
T Consensus         4 ~D~IaD~ltrIrNA~~~~~~~V~i~P~Sk~~~~il~iL~~eGYI~~f~~~~~~~~~-~i~V~Lkyr   68 (68)
T 1i6u_A            4 MDPLANALNHISNCERVGKKVVYIKPASKLIGRVLKVXQDNGYIGEFEFIEDGRAG-IFKVELIGK   68 (68)
T ss_dssp             CCHHHHHHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHTTSSCCEEEECCSSSC-EEEEECCSC
T ss_pred             CCHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCEEEEEEECCCCCC-EEEEEEEEC
T ss_conf             47799999998879876897379706328999999999987946244773158875-589998531


No 10 
>>2zkq_h 40S ribosomal protein S15AE; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} PDB: 1s1h_H (h:1-68)
Probab=99.80  E-value=1.8e-19  Score=129.72  Aligned_cols=64  Identities=39%  Similarity=0.578  Sum_probs=60.0

Q ss_pred             CCHHHHHHHHHHHHHHCCCCEEEE-ECCHHHHHHHHHHHHCCCEEEEEEEECCCCEEEEEEECCCC
Q ss_conf             977899997525488579978995-17578999999776312100179983487204788721676
Q gi|254780247|r    1 MSCLGDMLTRIRNANLRYKPSVVI-PFSRLHARVLDVLKTEGYIGEYCEIDAGKGRIQLKVDLKYH   65 (129)
Q Consensus         1 mD~iad~lt~IrNA~~~~k~~v~i-p~Skl~~~il~iL~~eGyI~~~~~~~~~~~~~~i~v~Lky~   65 (129)
                      +|||||+||+||||+++++.+|.+ |+||++.++|+||++||||++|+++++++.+ .+.|.|||.
T Consensus         4 ~D~IaD~ltrIrNA~~~~~~~V~i~P~Sk~~~~il~IL~~eGyI~~f~~~~~~~~~-~~~V~Lkyr   68 (68)
T 2zkq_h            4 MNVLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAG-KIVVNLTGR   68 (68)
T ss_dssp             CCHHHHHHHHHHHHHHHTCSEEEESCCCHHHHHHHHHHHHTTSSCCEEEECCSSSC-EEEEECCSC
T ss_pred             CCHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCC-EEEEEEECC
T ss_conf             36799999986719875897699852678999999999886656444421357762-468998414


No 11 
>>3bbn_H Ribosomal protein S8; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} (H:1-63)
Probab=99.77  E-value=1.1e-18  Score=125.30  Aligned_cols=61  Identities=25%  Similarity=0.365  Sum_probs=56.7

Q ss_pred             CCHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHCCCEEEEEEEECCCCEEEEEEEC
Q ss_conf             97789999752548857997899517578999999776312100179983487204788721
Q gi|254780247|r    1 MSCLGDMLTRIRNANLRYKPSVVIPFSRLHARVLDVLKTEGYIGEYCEIDAGKGRIQLKVDL   62 (129)
Q Consensus         1 mD~iad~lt~IrNA~~~~k~~v~ip~Skl~~~il~iL~~eGyI~~~~~~~~~~~~~~i~v~L   62 (129)
                      +||||||||+||||++++|.+|.+|+||++.+||+||++||||++|++.++++.+ .+.|.|
T Consensus         3 ~D~IaD~lTrIrNA~~a~~~~V~ip~Sk~~~~Il~IL~~eGyI~~f~~~~~~~~~-~l~V~L   63 (63)
T 3bbn_H            3 KDTIADIITCIRNADMNRKGTVRIVSTNITENIVKILLREGFIENARKHQERNKY-FLVLTL   63 (63)
T ss_dssp             SCHHHHHHHHHHHHHHTTCSEEEEECCHHHHHHTHHHHTTTSSSCEEEEESSSCE-EEEEEC
T ss_pred             CCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHCCEEEEEEEEECCCCC-CEEEEE
T ss_conf             7729999998773987699989950628999999999758814218998424564-216732


No 12 
>>2vqe_H 30S ribosomal protein S8, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} (H:1-63)
Probab=99.75  E-value=1.1e-18  Score=125.14  Aligned_cols=61  Identities=41%  Similarity=0.602  Sum_probs=56.8

Q ss_pred             CCHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHCCCEEEEEEEECCCCEEEEEEEC
Q ss_conf             97789999752548857997899517578999999776312100179983487204788721
Q gi|254780247|r    1 MSCLGDMLTRIRNANLRYKPSVVIPFSRLHARVLDVLKTEGYIGEYCEIDAGKGRIQLKVDL   62 (129)
Q Consensus         1 mD~iad~lt~IrNA~~~~k~~v~ip~Skl~~~il~iL~~eGyI~~~~~~~~~~~~~~i~v~L   62 (129)
                      +||||||||+||||++++|.+|.+|+||++.+||+||++||||++|++.++++++ .+.|.|
T Consensus         3 ~D~IaD~ltrIrNA~~a~~~~V~ip~Sk~~~~Il~IL~~eGyI~~f~~~~~~~~~-~~~V~L   63 (63)
T 2vqe_H            3 TDPIADMLTRIRNATRVYKESTDVPASRFKEEILRILAREGFIKGYERVDVDGKP-YLRVYL   63 (63)
T ss_dssp             SCHHHHHHHHHHHHHHTTCSCCCCBCCHHHHHHHHHHHHTTSSSEEEEEEETTEE-EEEEEC
T ss_pred             CCHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHCCCCCCCEECCCCCCC-EEEEHH
T ss_conf             6669999999886986699889962657899999999986965441550366753-243101


No 13 
>>3iag_C Recombining binding protein suppressor of hairless; protein-DNA complex, signaling, transcription, notch, activator, alternative splicing; HET: XYL; 2.00A {Mus musculus} PDB: 3brg_C* 2f8x_C (C:1-148,C:309-422)
Probab=62.19  E-value=5.9  Score=19.99  Aligned_cols=34  Identities=26%  Similarity=0.498  Sum_probs=23.6

Q ss_pred             CCEEEEEEECCCCCCCC----EECCCEEEECCCCCEEC
Q ss_conf             72047887216765430----00141676461212032
Q gi|254780247|r   53 KGRIQLKVDLKYHNGAS----VIRKIDCVSKPGRRLYS   86 (129)
Q Consensus        53 ~~~~~i~v~Lky~~~~~----vi~~i~~iSkP~~r~y~   86 (129)
                      +....+.|.+.|.++.-    .-++|+.|||||++.-.
T Consensus       110 rK~F~L~vkl~~~~g~~ig~F~SkrIkVISKPSKKkqs  147 (262)
T 3iag_C          110 RKHFMLSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQS  147 (262)
T ss_dssp             CSEECEEEEEEETTCCEEEEEECCCEEEESSCCCSCCC
T ss_pred             CCEEEEEEEEEECCCCCEEEECCCCCEEEECCCCCCCC
T ss_conf             43178999999259971688705650356265401012


No 14 
>>2hgc_A YJCQ protein; SR346, structure, autostructure, NESG, PSI-2, northeast structural genomics consortium, protein structure initiative; NMR {Bacillus subtilis} (A:)
Probab=44.83  E-value=5.5  Score=20.13  Aligned_cols=53  Identities=21%  Similarity=0.142  Sum_probs=31.2

Q ss_pred             HHHHHHHHHHHHCCCEEEEEEEECCCCE--EEEEEECC---CCCCCCEECCCEEEECC
Q ss_conf             7899999977631210017998348720--47887216---76543000141676461
Q gi|254780247|r   28 RLHARVLDVLKTEGYIGEYCEIDAGKGR--IQLKVDLK---YHNGASVIRKIDCVSKP   80 (129)
Q Consensus        28 kl~~~il~iL~~eGyI~~~~~~~~~~~~--~~i~v~Lk---y~~~~~vi~~i~~iSkP   80 (129)
                      ..-..++..|.++|||+|....++..+.  ....|+++   |-...+..++.....|+
T Consensus        31 ~~~~~il~~L~d~GyI~Gv~~~~~~~~v~~~~~~IT~~Gl~YL~ENS~mkKa~k~lKe   88 (102)
T 2hgc_A           31 DQFDDAVNFLKREGYIIGVHYSDDRPHLYKLGPELTEKGENYLKENGTWSKAYKTIKE   88 (102)
T ss_dssp             HHHHHHHHHHHHHTSEECCEESSSSEECCSSCCEECHHHHHHHHHHTCSCCC------
T ss_pred             HHHHHHHHHHHHCCCCCEEEEECCCCEEEEECCEECHHHHHHHHHCCHHHHHHHHHHH
T ss_conf             9999999999977984058986798868877774656889999987089999999999


No 15 
>>3brd_A LIN-12 and GLP-1 phenotype protein 1, isoform A; protein-DNA complex, signaling, transcription, notch; HET: DNA; 2.21A {Caenorhabditis elegans} (A:)
Probab=39.05  E-value=19  Score=17.11  Aligned_cols=44  Identities=25%  Similarity=0.388  Sum_probs=25.3

Q ss_pred             EEEEEEECCCCCCCC----EECCCEEEECCCCCEECCHH-H--CCCHHCCC
Q ss_conf             047887216765430----00141676461212032811-1--71110497
Q gi|254780247|r   55 RIQLKVDLKYHNGAS----VIRKIDCVSKPGRRLYSSFK-D--IPQVCNGL   98 (129)
Q Consensus        55 ~~~i~v~Lky~~~~~----vi~~i~~iSkP~~r~y~~~~-~--l~~~~~g~   98 (129)
                      ...+.+.+-|.++..    .-++|+.|||||++.-.... +  ..++.+|-
T Consensus       154 ~f~l~~~~~~~~~~~~g~F~S~~IkVISKPSKKkqs~Kn~d~~~LcI~sGs  204 (477)
T 3brd_A          154 YFDLNAQFFYGCGMEIGGFVSQRIKVISKPSKKKQSMKNTDCKYLCIASGT  204 (477)
T ss_dssp             EECCEEEEEETTSCEEEEEECCCEEEESSCCCCC-----CCHHHHBCBTTS
T ss_pred             EEEEEEEEECCCCCEEEEECCCCCEEEECCCCCCCCCCCCCCCCEEECCCC
T ss_conf             038999996179865999747762157267523111135665314544899


No 16 
>>2esh_A Conserved hypothetical protein TM0937; APC5794, X-RAY, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima MSB8} (A:)
Probab=31.83  E-value=38  Score=15.42  Aligned_cols=36  Identities=17%  Similarity=0.208  Sum_probs=27.1

Q ss_pred             CCHHHHHHHHHHHHCCCEEEEEEEECCCCEEEEEEE
Q ss_conf             757899999977631210017998348720478872
Q gi|254780247|r   26 FSRLHARVLDVLKTEGYIGEYCEIDAGKGRIQLKVD   61 (129)
Q Consensus        26 ~Skl~~~il~iL~~eGyI~~~~~~~~~~~~~~i~v~   61 (129)
                      .......+|+-|.++|||.+.....+++.++...++
T Consensus        48 s~g~iY~~L~rLe~~GlI~~~~~~~~~~~rk~Y~iT   83 (118)
T 2esh_A           48 HMGNIYRVLADLEESGFLSTEWDTTVSPPRKIYRIT   83 (118)
T ss_dssp             CCCCHHHHHHHHHHTTSEEEEEECSSSSCEEEEEEC
T ss_pred             CCCHHHHHHHHHHHCCCEEEEEECCCCCCCEEEEEC
T ss_conf             845178999999988985998503799886588989


Done!