Query gi|254780247|ref|YP_003064660.1| 30S ribosomal protein S8 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 129 No_of_seqs 111 out of 2009 Neff 6.5 Searched_HMMs 33803 Date Tue May 24 02:30:56 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780247.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >1sei_A Ribosomal protein S8; 99.9 3.5E-24 1E-28 156.1 6.0 62 68-129 1-62 (62) 2 >1s03_H 30S ribosomal protein 99.9 2.6E-22 7.8E-27 145.6 9.3 69 1-71 3-71 (71) 3 >2vqe_H 30S ribosomal protein 99.9 8.1E-23 2.4E-27 148.5 6.0 58 72-129 1-58 (58) 4 >3bbn_H Ribosomal protein S8; 99.9 1.6E-22 4.7E-27 146.8 5.0 58 72-129 1-58 (58) 5 >2zkq_h 40S ribosomal protein 99.9 1.2E-22 3.4E-27 147.6 3.9 61 66-129 2-62 (62) 6 >1s03_H 30S ribosomal protein 99.8 1.1E-21 3.3E-26 142.1 5.6 57 72-128 1-57 (58) 7 >1i6u_A 30S ribosomal protein 99.8 9.8E-22 2.9E-26 142.4 4.3 61 66-129 2-62 (62) 8 >1sei_A Ribosomal protein S8; 99.8 4.6E-20 1.4E-24 133.0 8.9 66 1-67 3-68 (68) 9 >1i6u_A 30S ribosomal protein 99.8 7.9E-20 2.3E-24 131.7 8.4 64 1-65 4-68 (68) 10 >2zkq_h 40S ribosomal protein 99.8 1.8E-19 5.2E-24 129.7 8.0 64 1-65 4-68 (68) 11 >3bbn_H Ribosomal protein S8; 99.8 1.1E-18 3.2E-23 125.3 7.9 61 1-62 3-63 (63) 12 >2vqe_H 30S ribosomal protein 99.8 1.1E-18 3.4E-23 125.1 6.5 61 1-62 3-63 (63) 13 >3iag_C Recombining binding pr 62.2 5.9 0.00017 20.0 2.5 34 53-86 110-147 (262) 14 >2hgc_A YJCQ protein; SR346, s 44.8 5.5 0.00016 20.1 0.1 53 28-80 31-88 (102) 15 >3brd_A LIN-12 and GLP-1 pheno 39.0 19 0.00057 17.1 2.1 44 55-98 154-204 (477) 16 >2esh_A Conserved hypothetical 31.8 38 0.0011 15.4 4.0 36 26-61 48-83 (118) No 1 >>1sei_A Ribosomal protein S8; prokaryotic, rRNA-binding; 1.90A {Geobacillus stearothermophilus} (A:69-130) Probab=99.90 E-value=3.5e-24 Score=156.12 Aligned_cols=62 Identities=42% Similarity=0.754 Sum_probs=61.2 Q ss_pred CCEECCCEEEECCCCCEECCHHHCCCHHCCCCEEEEECCCCEECHHHHHHCCCCCEEEEEEC Q ss_conf 30001416764612120328111711104971899818866003799996499958999989 Q gi|254780247|r 68 ASVIRKIDCVSKPGRRLYSSFKDIPQVCNGLGIMIVTTSKGVMAGHQARECKVGGEVLCSVF 129 (129) Q Consensus 68 ~~vi~~i~~iSkP~~r~y~~~~~l~~~~~g~G~~IiSTskGimt~~eA~~~~iGGeil~~v~ 129 (129) +|+|+++++||||++|+|.++++++++++|+|++|+|||+|||||+||+++++|||+||+|| T Consensus 1 k~vI~~~~~iSkP~~Rvy~~~~~l~~~~~g~g~~iisTskGim~~~eA~~~~iGGevL~~v~ 62 (62) T 1sei_A 1 ERVITGLKRISKPGLRVYVKAHEVPRVLNGLGIAILSTSQGVLTDKEARQKGTGGEIIAYVI 62 (62) T ss_dssp SBSCCCEEECCBTTBCCEECGGGCCCCCTTSCEEEEEETTEEEEHHHHHHHTCCEEEEEEEC T ss_pred CCCCCCCEECCCCCCEEECCHHHHHHHHHHCEEEEEECCCCCCCHHHHHHCCCCCEEEEEEC T ss_conf 64323325512356203636435244553340999978997223899998299968999989 No 2 >>1s03_H 30S ribosomal protein S8; protein-RNA complex, SPC operon, transcription/RNA complex; 2.70A {Escherichia coli} (H:1-71) Probab=99.87 E-value=2.6e-22 Score=145.60 Aligned_cols=69 Identities=38% Similarity=0.612 Sum_probs=65.9 Q ss_pred CCHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHCCCEEEEEEEECCCCEEEEEEECCCCCCCCEE Q ss_conf 97789999752548857997899517578999999776312100179983487204788721676543000 Q gi|254780247|r 1 MSCLGDMLTRIRNANLRYKPSVVIPFSRLHARVLDVLKTEGYIGEYCEIDAGKGRIQLKVDLKYHNGASVI 71 (129) Q Consensus 1 mD~iad~lt~IrNA~~~~k~~v~ip~Skl~~~il~iL~~eGyI~~~~~~~~~~~~~~i~v~Lky~~~~~vi 71 (129) |||||||||+||||+++++.+|.+|+||+++++|+||++||||++|++.+++++ .|+|.|||.+++|+| T Consensus 3 ~D~iaD~ltrIrNA~~~~~~~V~ip~Sk~~~~il~IL~~eGyI~~~~~~~~~~~--~i~V~LkY~~~~pvI 71 (71) T 1s03_H 3 QDPIADMLTRIRNGQAANKAAVTMPSSKLKVAIANVLKEEGFIEDFKVEGDTKP--ELELTLKYFQGKAVV 71 (71) T ss_dssp CCHHHHHHHHHHHHHHTTCSEEEEECCHHHHHHHHHHHHTTSEEEEEEECSSSC--EEEEEECBSSSSBSC T ss_pred CCHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHCCCCCCCEEECCCCC--EEEEEEECCCCCEEE T ss_conf 767999999877388659987996476789999999987681655277138871--699998526997876 No 3 >>2vqe_H 30S ribosomal protein S8, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} (H:81-138) Probab=99.87 E-value=8.1e-23 Score=148.48 Aligned_cols=58 Identities=52% Similarity=0.948 Sum_probs=56.5 Q ss_pred CCCEEEECCCCCEECCHHHCCCHHCCCCEEEEECCCCEECHHHHHHCCCCCEEEEEEC Q ss_conf 1416764612120328111711104971899818866003799996499958999989 Q gi|254780247|r 72 RKIDCVSKPGRRLYSSFKDIPQVCNGLGIMIVTTSKGVMAGHQARECKVGGEVLCSVF 129 (129) Q Consensus 72 ~~i~~iSkP~~r~y~~~~~l~~~~~g~G~~IiSTskGimt~~eA~~~~iGGeil~~v~ 129 (129) +.+++|||||+|+|.++++||++.+|+|++|+|||+|||||+||+++++|||+||||| T Consensus 1 ~~i~riSkpg~R~y~~~~~l~~~~~g~G~~IlSTskGimt~~eA~~~~iGGeiL~~v~ 58 (58) T 2vqe_H 1 HHIRRISKPGRRVYVGVKEIPRVRRGLGIAILSTSKGVLTDREARKLGVGGELICEVW 58 (58) T ss_dssp SCEEECSBTTBCCEECGGGCCCGGGGTSEEEEEETTEEEEHHHHHHTTCCEEEEEEEC T ss_pred CCCEEECCCCCEEECCCCCCCCCCCCEEEEEEECCCCCEEHHHHHHHCCCCEEEEEEC T ss_conf 4217954788335644232532149758999968987246999998399977999989 No 4 >>3bbn_H Ribosomal protein S8; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} (H:77-134) Probab=99.86 E-value=1.6e-22 Score=146.80 Aligned_cols=58 Identities=41% Similarity=0.879 Sum_probs=56.5 Q ss_pred CCCEEEECCCCCEECCHHHCCCHHCCCCEEEEECCCCEECHHHHHHCCCCCEEEEEEC Q ss_conf 1416764612120328111711104971899818866003799996499958999989 Q gi|254780247|r 72 RKIDCVSKPGRRLYSSFKDIPQVCNGLGIMIVTTSKGVMAGHQARECKVGGEVLCSVF 129 (129) Q Consensus 72 ~~i~~iSkP~~r~y~~~~~l~~~~~g~G~~IiSTskGimt~~eA~~~~iGGeil~~v~ 129 (129) .++++|||||+|+|.++++|+++.+|+|++|+|||+|||||+||+++++|||+||||| T Consensus 1 ~~i~riSkpg~R~y~~~~~l~k~~~g~G~~IlSTskGim~~~eA~~~~vGGevL~~V~ 58 (58) T 3bbn_H 1 FHLKRVSRPGLRIYSNYQRIPRILGGMGIAILSTSRGIMTDREARLEGIGGEILCYIW 58 (58) T ss_dssp SCEEESSBTTBCCEECSSSCCCGGGTTSEEEEEESSSEECTTHHHHHTCCEEEEEEEC T ss_pred EEEEEECCCCCCEECCHHHCCCCCCCCEEEEEECCCCEEEHHHHHHHCCCCEEEEEEC T ss_conf 0278854547001336000663136714999817976367899998099967999989 No 5 >>2zkq_h 40S ribosomal protein S15AE; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} PDB: 1s1h_H (h:69-130) Probab=99.86 E-value=1.2e-22 Score=147.59 Aligned_cols=61 Identities=26% Similarity=0.316 Sum_probs=58.4 Q ss_pred CCCCEECCCEEEECCCCCEECCHHHCCCHHCCCCEEEEECCCCEECHHHHHHCCCCCEEEEEEC Q ss_conf 5430001416764612120328111711104971899818866003799996499958999989 Q gi|254780247|r 66 NGASVIRKIDCVSKPGRRLYSSFKDIPQVCNGLGIMIVTTSKGVMAGHQARECKVGGEVLCSVF 129 (129) Q Consensus 66 ~~~~vi~~i~~iSkP~~r~y~~~~~l~~~~~g~G~~IiSTskGimt~~eA~~~~iGGeil~~v~ 129 (129) |++|+|+++++||+|++|+|.+..++| +|+|++|+|||+|||||+||+++++|||+||||| T Consensus 2 n~~~~I~~~~rvSkpg~r~y~~~~~~~---~~~G~~IiSTskGvmt~~eA~~~~iGGeiL~~V~ 62 (62) T 2zkq_h 2 NKCGVISPRFDVQLKDLEKWQNNLLPS---RQFGFIVLTTSAGIMDHEEARRKHTGGKILGFFF 62 (62) T ss_dssp SCEEECSSCCEECSSTHHHHHHHHCSS---TTCCEEEEEETTEEEEHHHHHHHTCCEEEEEEEC T ss_pred CCCCCCCCEEEECCCCCCHHHCCCCCC---CCCEEEEEECCCCCCCHHHHHHHCCCCEEEEEEC T ss_conf 778975543672565422232444224---8966999968974211299998399962999989 No 6 >>1s03_H 30S ribosomal protein S8; protein-RNA complex, SPC operon, transcription/RNA complex; 2.70A {Escherichia coli} (H:72-129) Probab=99.84 E-value=1.1e-21 Score=142.06 Aligned_cols=57 Identities=47% Similarity=0.878 Sum_probs=55.6 Q ss_pred CCCEEEECCCCCEECCHHHCCCHHCCCCEEEEECCCCEECHHHHHHCCCCCEEEEEE Q ss_conf 141676461212032811171110497189981886600379999649995899998 Q gi|254780247|r 72 RKIDCVSKPGRRLYSSFKDIPQVCNGLGIMIVTTSKGVMAGHQARECKVGGEVLCSV 128 (129) Q Consensus 72 ~~i~~iSkP~~r~y~~~~~l~~~~~g~G~~IiSTskGimt~~eA~~~~iGGeil~~v 128 (129) +++++|||||+|+|.++++||++.+|+|++|+|||+|||||+||+++++|||+|||| T Consensus 1 ~~i~riSkpg~Riy~~~~~l~~~~~g~G~~IlSTskGimt~~eA~~~~vGGevL~~V 57 (58) T 1s03_H 1 ESIQRVSRPGLRIYKRKDELPKVMAGLGIAVVSTSKGVMTDRAARQAGLGGEIICYV 57 (58) T ss_dssp SCEEECSBTTBCCEECGGGSCCSCSSSCEEEEEETTEEEEHHHHHHHTCCEEEEEEE T ss_pred CCCEEECCCCCCCCCCHHHHHHCCCCEEEEEECCCCCEEEHHHHHHHCCCCEEEEEE T ss_conf 174361468832135655543302986899970898657699999829995899998 No 7 >>1i6u_A 30S ribosomal protein S8P; protein-RNA interactions, ribosome, RNA, X-RAY crystallography; 2.60A {Methanocaldococcus jannaschii} (A:69-130) Probab=99.84 E-value=9.8e-22 Score=142.38 Aligned_cols=61 Identities=28% Similarity=0.399 Sum_probs=57.8 Q ss_pred CCCCEECCCEEEECCCCCEECCHHHCCCHHCCCCEEEEECCCCEECHHHHHHCCCCCEEEEEEC Q ss_conf 5430001416764612120328111711104971899818866003799996499958999989 Q gi|254780247|r 66 NGASVIRKIDCVSKPGRRLYSSFKDIPQVCNGLGIMIVTTSKGVMAGHQARECKVGGEVLCSVF 129 (129) Q Consensus 66 ~~~~vi~~i~~iSkP~~r~y~~~~~l~~~~~g~G~~IiSTskGimt~~eA~~~~iGGeil~~v~ 129 (129) |++|+|+++++||+|++|+|.+..++| +|+|++|+|||+|||||+||+++++|||+||||| T Consensus 2 n~~~~I~~~~~vs~pg~r~y~~~~~~~---~~~G~~IlSTskGimt~~eA~~~~iGGeiL~~vy 62 (62) T 1i6u_A 2 NKCGAIKPRFPVKKFGYEKFEKRYLPA---RDFGILIVSTTQGVXSHEEAKKRGLGGRLLAYVY 62 (62) T ss_dssp SCEEECSSCCEECTTCCHHHHHHHCSS---TTCCEEEEEETTEEEEHHHHHHTTCCEEEEEEEC T ss_pred CCCCCCCCEEEECCCCCCCCCCCCCCC---CCCEEEEEECCCCCCCHHHHHHCCCCCEEEEEEC T ss_conf 679976551684688761145377688---9976999968965357899997399977999989 No 8 >>1sei_A Ribosomal protein S8; prokaryotic, rRNA-binding; 1.90A {Geobacillus stearothermophilus} (A:1-68) Probab=99.82 E-value=4.6e-20 Score=132.99 Aligned_cols=66 Identities=35% Similarity=0.564 Sum_probs=61.9 Q ss_pred CCHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHCCCEEEEEEEECCCCEEEEEEECCCCCC Q ss_conf 9778999975254885799789951757899999977631210017998348720478872167654 Q gi|254780247|r 1 MSCLGDMLTRIRNANLRYKPSVVIPFSRLHARVLDVLKTEGYIGEYCEIDAGKGRIQLKVDLKYHNG 67 (129) Q Consensus 1 mD~iad~lt~IrNA~~~~k~~v~ip~Skl~~~il~iL~~eGyI~~~~~~~~~~~~~~i~v~Lky~~~ 67 (129) ||||||+||+||||+++++.+|.+|+|+++.++|+||++||||++|++.++++.+ .+.|.|||..+ T Consensus 3 ~D~iaD~ltrIrNA~~~~~~~V~ip~Sk~~~~il~IL~~eGyI~~~~~~~~~~~~-~~~V~LKy~~N 68 (68) T 1sei_A 3 TDPIADMLTAIRNANMVRHEKLEVPASKIKREIAEILKREGFIRDYEYIEDNKQG-ILRIFLKYGPN 68 (68) T ss_dssp SHHHHHHHHHHHHHHHTTCSEEEEECCHHHHHHHHHHHHTTSEEEEEEEESSSCE-EEEEEECBSSS T ss_pred CCHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCC-EEEEEECCCCC T ss_conf 6349999998787987699889961758999999999871832014786046775-59999114577 No 9 >>1i6u_A 30S ribosomal protein S8P; protein-RNA interactions, ribosome, RNA, X-RAY crystallography; 2.60A {Methanocaldococcus jannaschii} (A:1-68) Probab=99.81 E-value=7.9e-20 Score=131.66 Aligned_cols=64 Identities=39% Similarity=0.533 Sum_probs=60.1 Q ss_pred CCHHHHHHHHHHHHHHCCCCEEEE-ECCHHHHHHHHHHHHCCCEEEEEEEECCCCEEEEEEECCCC Q ss_conf 977899997525488579978995-17578999999776312100179983487204788721676 Q gi|254780247|r 1 MSCLGDMLTRIRNANLRYKPSVVI-PFSRLHARVLDVLKTEGYIGEYCEIDAGKGRIQLKVDLKYH 65 (129) Q Consensus 1 mD~iad~lt~IrNA~~~~k~~v~i-p~Skl~~~il~iL~~eGyI~~~~~~~~~~~~~~i~v~Lky~ 65 (129) ||||||+||+||||+++++.+|.+ |+||++.+||+||++||||++|+..++++.+ .+.|+|||. T Consensus 4 ~D~IaD~ltrIrNA~~~~~~~V~i~P~Sk~~~~il~iL~~eGYI~~f~~~~~~~~~-~i~V~Lkyr 68 (68) T 1i6u_A 4 MDPLANALNHISNCERVGKKVVYIKPASKLIGRVLKVXQDNGYIGEFEFIEDGRAG-IFKVELIGK 68 (68) T ss_dssp CCHHHHHHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHTTSSCCEEEECCSSSC-EEEEECCSC T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCEEEEEEECCCCCC-EEEEEEEEC T ss_conf 47799999998879876897379706328999999999987946244773158875-589998531 No 10 >>2zkq_h 40S ribosomal protein S15AE; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} PDB: 1s1h_H (h:1-68) Probab=99.80 E-value=1.8e-19 Score=129.72 Aligned_cols=64 Identities=39% Similarity=0.578 Sum_probs=60.0 Q ss_pred CCHHHHHHHHHHHHHHCCCCEEEE-ECCHHHHHHHHHHHHCCCEEEEEEEECCCCEEEEEEECCCC Q ss_conf 977899997525488579978995-17578999999776312100179983487204788721676 Q gi|254780247|r 1 MSCLGDMLTRIRNANLRYKPSVVI-PFSRLHARVLDVLKTEGYIGEYCEIDAGKGRIQLKVDLKYH 65 (129) Q Consensus 1 mD~iad~lt~IrNA~~~~k~~v~i-p~Skl~~~il~iL~~eGyI~~~~~~~~~~~~~~i~v~Lky~ 65 (129) +|||||+||+||||+++++.+|.+ |+||++.++|+||++||||++|+++++++.+ .+.|.|||. T Consensus 4 ~D~IaD~ltrIrNA~~~~~~~V~i~P~Sk~~~~il~IL~~eGyI~~f~~~~~~~~~-~~~V~Lkyr 68 (68) T 2zkq_h 4 MNVLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAG-KIVVNLTGR 68 (68) T ss_dssp CCHHHHHHHHHHHHHHHTCSEEEESCCCHHHHHHHHHHHHTTSSCCEEEECCSSSC-EEEEECCSC T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCC-EEEEEEECC T ss_conf 36799999986719875897699852678999999999886656444421357762-468998414 No 11 >>3bbn_H Ribosomal protein S8; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} (H:1-63) Probab=99.77 E-value=1.1e-18 Score=125.30 Aligned_cols=61 Identities=25% Similarity=0.365 Sum_probs=56.7 Q ss_pred CCHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHCCCEEEEEEEECCCCEEEEEEEC Q ss_conf 97789999752548857997899517578999999776312100179983487204788721 Q gi|254780247|r 1 MSCLGDMLTRIRNANLRYKPSVVIPFSRLHARVLDVLKTEGYIGEYCEIDAGKGRIQLKVDL 62 (129) Q Consensus 1 mD~iad~lt~IrNA~~~~k~~v~ip~Skl~~~il~iL~~eGyI~~~~~~~~~~~~~~i~v~L 62 (129) +||||||||+||||++++|.+|.+|+||++.+||+||++||||++|++.++++.+ .+.|.| T Consensus 3 ~D~IaD~lTrIrNA~~a~~~~V~ip~Sk~~~~Il~IL~~eGyI~~f~~~~~~~~~-~l~V~L 63 (63) T 3bbn_H 3 KDTIADIITCIRNADMNRKGTVRIVSTNITENIVKILLREGFIENARKHQERNKY-FLVLTL 63 (63) T ss_dssp SCHHHHHHHHHHHHHHTTCSEEEEECCHHHHHHTHHHHTTTSSSCEEEEESSSCE-EEEEEC T ss_pred CCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHCCEEEEEEEEECCCCC-CEEEEE T ss_conf 7729999998773987699989950628999999999758814218998424564-216732 No 12 >>2vqe_H 30S ribosomal protein S8, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} (H:1-63) Probab=99.75 E-value=1.1e-18 Score=125.14 Aligned_cols=61 Identities=41% Similarity=0.602 Sum_probs=56.8 Q ss_pred CCHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHCCCEEEEEEEECCCCEEEEEEEC Q ss_conf 97789999752548857997899517578999999776312100179983487204788721 Q gi|254780247|r 1 MSCLGDMLTRIRNANLRYKPSVVIPFSRLHARVLDVLKTEGYIGEYCEIDAGKGRIQLKVDL 62 (129) Q Consensus 1 mD~iad~lt~IrNA~~~~k~~v~ip~Skl~~~il~iL~~eGyI~~~~~~~~~~~~~~i~v~L 62 (129) +||||||||+||||++++|.+|.+|+||++.+||+||++||||++|++.++++++ .+.|.| T Consensus 3 ~D~IaD~ltrIrNA~~a~~~~V~ip~Sk~~~~Il~IL~~eGyI~~f~~~~~~~~~-~~~V~L 63 (63) T 2vqe_H 3 TDPIADMLTRIRNATRVYKESTDVPASRFKEEILRILAREGFIKGYERVDVDGKP-YLRVYL 63 (63) T ss_dssp SCHHHHHHHHHHHHHHTTCSCCCCBCCHHHHHHHHHHHHTTSSSEEEEEEETTEE-EEEEEC T ss_pred CCHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHCCCCCCCEECCCCCCC-EEEEHH T ss_conf 6669999999886986699889962657899999999986965441550366753-243101 No 13 >>3iag_C Recombining binding protein suppressor of hairless; protein-DNA complex, signaling, transcription, notch, activator, alternative splicing; HET: XYL; 2.00A {Mus musculus} PDB: 3brg_C* 2f8x_C (C:1-148,C:309-422) Probab=62.19 E-value=5.9 Score=19.99 Aligned_cols=34 Identities=26% Similarity=0.498 Sum_probs=23.6 Q ss_pred CCEEEEEEECCCCCCCC----EECCCEEEECCCCCEEC Q ss_conf 72047887216765430----00141676461212032 Q gi|254780247|r 53 KGRIQLKVDLKYHNGAS----VIRKIDCVSKPGRRLYS 86 (129) Q Consensus 53 ~~~~~i~v~Lky~~~~~----vi~~i~~iSkP~~r~y~ 86 (129) +....+.|.+.|.++.- .-++|+.|||||++.-. T Consensus 110 rK~F~L~vkl~~~~g~~ig~F~SkrIkVISKPSKKkqs 147 (262) T 3iag_C 110 RKHFMLSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQS 147 (262) T ss_dssp CSEECEEEEEEETTCCEEEEEECCCEEEESSCCCSCCC T ss_pred CCEEEEEEEEEECCCCCEEEECCCCCEEEECCCCCCCC T ss_conf 43178999999259971688705650356265401012 No 14 >>2hgc_A YJCQ protein; SR346, structure, autostructure, NESG, PSI-2, northeast structural genomics consortium, protein structure initiative; NMR {Bacillus subtilis} (A:) Probab=44.83 E-value=5.5 Score=20.13 Aligned_cols=53 Identities=21% Similarity=0.142 Sum_probs=31.2 Q ss_pred HHHHHHHHHHHHCCCEEEEEEEECCCCE--EEEEEECC---CCCCCCEECCCEEEECC Q ss_conf 7899999977631210017998348720--47887216---76543000141676461 Q gi|254780247|r 28 RLHARVLDVLKTEGYIGEYCEIDAGKGR--IQLKVDLK---YHNGASVIRKIDCVSKP 80 (129) Q Consensus 28 kl~~~il~iL~~eGyI~~~~~~~~~~~~--~~i~v~Lk---y~~~~~vi~~i~~iSkP 80 (129) ..-..++..|.++|||+|....++..+. ....|+++ |-...+..++.....|+ T Consensus 31 ~~~~~il~~L~d~GyI~Gv~~~~~~~~v~~~~~~IT~~Gl~YL~ENS~mkKa~k~lKe 88 (102) T 2hgc_A 31 DQFDDAVNFLKREGYIIGVHYSDDRPHLYKLGPELTEKGENYLKENGTWSKAYKTIKE 88 (102) T ss_dssp HHHHHHHHHHHHHTSEECCEESSSSEECCSSCCEECHHHHHHHHHHTCSCCC------ T ss_pred HHHHHHHHHHHHCCCCCEEEEECCCCEEEEECCEECHHHHHHHHHCCHHHHHHHHHHH T ss_conf 9999999999977984058986798868877774656889999987089999999999 No 15 >>3brd_A LIN-12 and GLP-1 phenotype protein 1, isoform A; protein-DNA complex, signaling, transcription, notch; HET: DNA; 2.21A {Caenorhabditis elegans} (A:) Probab=39.05 E-value=19 Score=17.11 Aligned_cols=44 Identities=25% Similarity=0.388 Sum_probs=25.3 Q ss_pred EEEEEEECCCCCCCC----EECCCEEEECCCCCEECCHH-H--CCCHHCCC Q ss_conf 047887216765430----00141676461212032811-1--71110497 Q gi|254780247|r 55 RIQLKVDLKYHNGAS----VIRKIDCVSKPGRRLYSSFK-D--IPQVCNGL 98 (129) Q Consensus 55 ~~~i~v~Lky~~~~~----vi~~i~~iSkP~~r~y~~~~-~--l~~~~~g~ 98 (129) ...+.+.+-|.++.. .-++|+.|||||++.-.... + ..++.+|- T Consensus 154 ~f~l~~~~~~~~~~~~g~F~S~~IkVISKPSKKkqs~Kn~d~~~LcI~sGs 204 (477) T 3brd_A 154 YFDLNAQFFYGCGMEIGGFVSQRIKVISKPSKKKQSMKNTDCKYLCIASGT 204 (477) T ss_dssp EECCEEEEEETTSCEEEEEECCCEEEESSCCCCC-----CCHHHHBCBTTS T ss_pred EEEEEEEEECCCCCEEEEECCCCCEEEECCCCCCCCCCCCCCCCEEECCCC T ss_conf 038999996179865999747762157267523111135665314544899 No 16 >>2esh_A Conserved hypothetical protein TM0937; APC5794, X-RAY, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima MSB8} (A:) Probab=31.83 E-value=38 Score=15.42 Aligned_cols=36 Identities=17% Similarity=0.208 Sum_probs=27.1 Q ss_pred CCHHHHHHHHHHHHCCCEEEEEEEECCCCEEEEEEE Q ss_conf 757899999977631210017998348720478872 Q gi|254780247|r 26 FSRLHARVLDVLKTEGYIGEYCEIDAGKGRIQLKVD 61 (129) Q Consensus 26 ~Skl~~~il~iL~~eGyI~~~~~~~~~~~~~~i~v~ 61 (129) .......+|+-|.++|||.+.....+++.++...++ T Consensus 48 s~g~iY~~L~rLe~~GlI~~~~~~~~~~~rk~Y~iT 83 (118) T 2esh_A 48 HMGNIYRVLADLEESGFLSTEWDTTVSPPRKIYRIT 83 (118) T ss_dssp CCCCHHHHHHHHHHTTSEEEEEECSSSSCEEEEEEC T ss_pred CCCHHHHHHHHHHHCCCEEEEEECCCCCCCEEEEEC T ss_conf 845178999999988985998503799886588989 Done!