HHsearch results for GI: 254780247 and protein with PDBid: 1i6u_A
>1i6u_A 30S ribosomal protein S8P; protein-RNA interactions, ribosome, RNA, X-RAY crystallography; 2.60A {Methanocaldococcus jannaschii} SCOP: d.140.1.1
Probab=100.00 E-value=0 Score=280.93 Aligned_cols=125 Identities=34% Similarity=0.499 Sum_probs=117.9
Q ss_pred CCHHHHHHHHHHHHHHCCCCEEEE-ECCHHHHHHHHHHHHCCCEEEEEEEECCCCEEEEEEECCCC-CCCCEECCCEEEE
Q ss_conf 977899997525488579978995-17578999999776312100179983487204788721676-5430001416764
Q gi|254780247|r 1 MSCLGDMLTRIRNANLRYKPSVVI-PFSRLHARVLDVLKTEGYIGEYCEIDAGKGRIQLKVDLKYH-NGASVIRKIDCVS 78 (129)
Q Consensus 1 mD~iad~lt~IrNA~~~~k~~v~i-p~Skl~~~il~iL~~eGyI~~~~~~~~~~~~~~i~v~Lky~-~~~~vi~~i~~iS 78 (129)
|||||||||+||||++++|++|.+ |+||++++||+||++||||++|++.++++.+ .+.|.|+|. +++|+|++++++|
T Consensus 4 ~D~iaD~ltrIrNa~~a~~~~V~i~P~Sk~~~~il~iL~~eGyI~~~~~~~~~~~~-~i~i~Lk~~~~~~~~i~~~~~vS 82 (130)
T 1i6u_A 4 MDPLANALNHISNCERVGKKVVYIKPASKLIGRVLKVMQDNGYIGEFEFIEDGRAG-IFKVELIGKINKCGAIKPRFPVK 82 (130)
T ss_dssp CCHHHHHHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHTTSSCCEEEECCSSSC-EEEEECCSCCSCEEECSSCCEEC
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCC-CEEEEEEECCCCCCCCCCEEEEC
T ss_conf 57799999986749885998799964708999999999987983137874058766-13899985146778655457855
Q ss_pred CCCCCEECCHHHCCCHHCCCCEEEEECCCCEECHHHHHHCCCCCEEEEEEC
Q ss_conf 612120328111711104971899818866003799996499958999989
Q gi|254780247|r 79 KPGRRLYSSFKDIPQVCNGLGIMIVTTSKGVMAGHQARECKVGGEVLCSVF 129 (129)
Q Consensus 79 kP~~r~y~~~~~l~~~~~g~G~~IiSTskGimt~~eA~~~~iGGeil~~v~ 129 (129)
+|++|.| .++|++.+|+|++|+|||+|||||+||+++++|||+||+||
T Consensus 83 kpg~r~~---~~~~~~~~~lGi~IlSTskGimt~~eAr~~~vGGEllc~V~ 130 (130)
T 1i6u_A 83 KFGYEKF---EKRYLPARDFGILIVSTTQGVMSHEEAKKRGLGGRLLAYVY 130 (130)
T ss_dssp TTCCHHH---HHHHCSSTTCCEEEEEETTEEEEHHHHHHTTCCEEEEEEEC
T ss_pred CCCCEEC---HHCCCCCCCCEEEEEECCCCCCCHHHHHHCCCCCEEEEEEC
T ss_conf 8874120---01263669978999978931047599997299974999989