HHsearch results for GI: 254780247 and protein with PDBid: 1i6u_A

>1i6u_A 30S ribosomal protein S8P; protein-RNA interactions, ribosome, RNA, X-RAY crystallography; 2.60A {Methanocaldococcus jannaschii} SCOP: d.140.1.1
Probab=100.00  E-value=0  Score=280.93  Aligned_cols=125  Identities=34%  Similarity=0.499  Sum_probs=117.9

Q ss_pred             CCHHHHHHHHHHHHHHCCCCEEEE-ECCHHHHHHHHHHHHCCCEEEEEEEECCCCEEEEEEECCCC-CCCCEECCCEEEE
Q ss_conf             977899997525488579978995-17578999999776312100179983487204788721676-5430001416764
Q gi|254780247|r    1 MSCLGDMLTRIRNANLRYKPSVVI-PFSRLHARVLDVLKTEGYIGEYCEIDAGKGRIQLKVDLKYH-NGASVIRKIDCVS   78 (129)
Q Consensus         1 mD~iad~lt~IrNA~~~~k~~v~i-p~Skl~~~il~iL~~eGyI~~~~~~~~~~~~~~i~v~Lky~-~~~~vi~~i~~iS   78 (129)
                      |||||||||+||||++++|++|.+ |+||++++||+||++||||++|++.++++.+ .+.|.|+|. +++|+|++++++|
T Consensus         4 ~D~iaD~ltrIrNa~~a~~~~V~i~P~Sk~~~~il~iL~~eGyI~~~~~~~~~~~~-~i~i~Lk~~~~~~~~i~~~~~vS   82 (130)
T 1i6u_A            4 MDPLANALNHISNCERVGKKVVYIKPASKLIGRVLKVMQDNGYIGEFEFIEDGRAG-IFKVELIGKINKCGAIKPRFPVK   82 (130)
T ss_dssp             CCHHHHHHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHTTSSCCEEEECCSSSC-EEEEECCSCCSCEEECSSCCEEC
T ss_pred             CCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCC-CEEEEEEECCCCCCCCCCEEEEC
T ss_conf             57799999986749885998799964708999999999987983137874058766-13899985146778655457855


Q ss_pred             CCCCCEECCHHHCCCHHCCCCEEEEECCCCEECHHHHHHCCCCCEEEEEEC
Q ss_conf             612120328111711104971899818866003799996499958999989
Q gi|254780247|r   79 KPGRRLYSSFKDIPQVCNGLGIMIVTTSKGVMAGHQARECKVGGEVLCSVF  129 (129)
Q Consensus        79 kP~~r~y~~~~~l~~~~~g~G~~IiSTskGimt~~eA~~~~iGGeil~~v~  129 (129)
                      +|++|.|   .++|++.+|+|++|+|||+|||||+||+++++|||+||+||
T Consensus        83 kpg~r~~---~~~~~~~~~lGi~IlSTskGimt~~eAr~~~vGGEllc~V~  130 (130)
T 1i6u_A           83 KFGYEKF---EKRYLPARDFGILIVSTTQGVMSHEEAKKRGLGGRLLAYVY  130 (130)
T ss_dssp             TTCCHHH---HHHHCSSTTCCEEEEEETTEEEEHHHHHHTTCCEEEEEEEC
T ss_pred             CCCCEEC---HHCCCCCCCCEEEEEECCCCCCCHHHHHHCCCCCEEEEEEC
T ss_conf             8874120---01263669978999978931047599997299974999989