HHsearch results for GI: 254780247 and protein with PDBid: 2vqe_H

>2vqe_H 30S ribosomal protein S8, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: d.140.1.1 PDB: 1eg0_E* 1fka_H 1gix_K* 1hnw_H* 1hnx_H* 1hnz_H* 1hr0_H 1ibk_H* 1ibl_H* 1ibm_H 1j5e_H 1jgo_K* 1jgp_K* 1jgq_K* 1ml5_K* 1n32_H* 1n33_H* 1n34_H 1n36_H 1pns_H ...
Probab=100.00  E-value=0  Score=280.89  Aligned_cols=128  Identities=44%  Similarity=0.702  Sum_probs=118.8

Q ss_pred             CCHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHCCCEEEEEEEECCCCEEEEEEE--------CCCCCCCCEEC
Q ss_conf             9778999975254885799789951757899999977631210017998348720478872--------16765430001
Q gi|254780247|r    1 MSCLGDMLTRIRNANLRYKPSVVIPFSRLHARVLDVLKTEGYIGEYCEIDAGKGRIQLKVD--------LKYHNGASVIR   72 (129)
Q Consensus         1 mD~iad~lt~IrNA~~~~k~~v~ip~Skl~~~il~iL~~eGyI~~~~~~~~~~~~~~i~v~--------Lky~~~~~vi~   72 (129)
                      .|||||||++|+||+++++.+|.+|+||+++++|++|++||||++|++.+++.... +.+.        ++|.++.|+|+
T Consensus         3 ~D~iaD~l~~I~Na~~a~k~~v~ip~Skl~~~il~iL~~eGyI~~f~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~vI~   81 (138)
T 2vqe_H            3 TDPIADMLTRIRNATRVYKESTDVPASRFKEEILRILAREGFIKGYERVDVDGKPY-LRVYLKYGPRRQGPDPRPEQVIH   81 (138)
T ss_dssp             SCHHHHHHHHHHHHHHTTCSCCCCBCCHHHHHHHHHHHHTTSSSEEEEEEETTEEE-EEEECCBCCCCSSSCCCCCBSCS
T ss_pred             CCHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHCCCCCCCEEECCCCCCE-EEEEEECHHCCCCCCCCCCCCEE
T ss_conf             66699999987739876998799626089999999999879866642441578735-78876100002356778873210


Q ss_pred             CCEEEECCCCCEECCHHHCCCHHCCCCEEEEECCCCEECHHHHHHCCCCCEEEEEEC
Q ss_conf             416764612120328111711104971899818866003799996499958999989
Q gi|254780247|r   73 KIDCVSKPGRRLYSSFKDIPQVCNGLGIMIVTTSKGVMAGHQARECKVGGEVLCSVF  129 (129)
Q Consensus        73 ~i~~iSkP~~r~y~~~~~l~~~~~g~G~~IiSTskGimt~~eA~~~~iGGeil~~v~  129 (129)
                      .++++|+|++|+|.+++++|++.+|+|++|+|||+|||||+||+++++|||+|||||
T Consensus        82 ~i~~iSkp~~r~y~~~~~l~~~~~g~G~~IlSTskGimt~~eA~~~~iGGe~l~~V~  138 (138)
T 2vqe_H           82 HIRRISKPGRRVYVGVKEIPRVRRGLGIAILSTSKGVLTDREARKLGVGGELICEVW  138 (138)
T ss_dssp             CEEECSBTTBCCEECGGGCCCGGGGTSEEEEEETTEEEEHHHHHHTTCCEEEEEEEC
T ss_pred             EEEEECCCCCCCCCCHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHCCCCEEEEEEC
T ss_conf             036860432101047867655318855899987977311899998299977999989