Query gi|254780247|ref|YP_003064660.1| 30S ribosomal protein S8 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 129
No_of_seqs 111 out of 2009
Neff 6.5
Searched_HMMs 23785
Date Tue May 24 06:00:04 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780247.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1sei_A Ribosomal protein S8; p 100.0 0 0 288.5 14.7 128 1-129 3-130 (130)
2 3bbn_H Ribosomal protein S8; s 100.0 0 0 289.2 13.4 127 2-129 4-134 (134)
3 1s03_H 30S ribosomal protein S 100.0 0 0 286.3 14.9 126 1-128 3-128 (129)
4 2vqe_H 30S ribosomal protein S 100.0 0 0 280.9 13.2 128 1-129 3-138 (138)
5 1i6u_A 30S ribosomal protein S 100.0 0 0 280.9 12.8 125 1-129 4-130 (130)
6 2zkq_h 40S ribosomal protein S 100.0 9.2E-44 0 265.3 11.9 125 1-129 4-130 (130)
7 3iag_C Recombining binding pro 50.6 12 0.0005 17.4 3.3 46 53-98 110-159 (422)
8 2hgc_A YJCQ protein; SR346, st 43.7 4.4 0.00019 19.8 0.2 53 28-80 31-88 (102)
9 3brd_A LIN-12 and GLP-1 phenot 29.0 25 0.001 15.6 2.1 42 57-98 156-204 (477)
10 2esh_A Conserved hypothetical 17.4 52 0.0022 13.8 3.6 37 25-61 47-83 (118)
No 1
>1sei_A Ribosomal protein S8; prokaryotic, rRNA-binding; 1.90A {Geobacillus stearothermophilus} SCOP: d.140.1.1
Probab=100.00 E-value=0 Score=288.46 Aligned_cols=128 Identities=38% Similarity=0.656 Sum_probs=123.3
Q ss_pred CCHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHCCCEEEEEEEECCCCEEEEEEECCCCCCCCEECCCEEEECC
Q ss_conf 97789999752548857997899517578999999776312100179983487204788721676543000141676461
Q gi|254780247|r 1 MSCLGDMLTRIRNANLRYKPSVVIPFSRLHARVLDVLKTEGYIGEYCEIDAGKGRIQLKVDLKYHNGASVIRKIDCVSKP 80 (129)
Q Consensus 1 mD~iad~lt~IrNA~~~~k~~v~ip~Skl~~~il~iL~~eGyI~~~~~~~~~~~~~~i~v~Lky~~~~~vi~~i~~iSkP 80 (129)
.|||||||++||||++++|.+|.+|+||++.++|++|++||||++|++.++++.+ .++|.|+|.+++|+|+++++||||
T Consensus 3 ~D~iaD~Lt~IrNA~~a~k~~V~iP~Skl~~~il~vL~~eGyI~~f~~~~~~~~~-~i~v~Lky~~~~~~i~~~~~vSkp 81 (130)
T 1sei_A 3 TDPIADMLTAIRNANMVRHEKLEVPASKIKREIAEILKREGFIRDYEYIEDNKQG-ILRIFLKYGPNERVITGLKRISKP 81 (130)
T ss_dssp SHHHHHHHHHHHHHHHTTCSEEEEECCHHHHHHHHHHHHTTSEEEEEEEESSSCE-EEEEEECBSSSSBSCCCEEECCBT
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCC-EEEEEECCCCCCCCCCCCEECCCC
T ss_conf 6349999998787987699889961758999999999871832014786046775-599991145776432332551235
Q ss_pred CCCEECCHHHCCCHHCCCCEEEEECCCCEECHHHHHHCCCCCEEEEEEC
Q ss_conf 2120328111711104971899818866003799996499958999989
Q gi|254780247|r 81 GRRLYSSFKDIPQVCNGLGIMIVTTSKGVMAGHQARECKVGGEVLCSVF 129 (129)
Q Consensus 81 ~~r~y~~~~~l~~~~~g~G~~IiSTskGimt~~eA~~~~iGGeil~~v~ 129 (129)
|+|+|.+++++|++.+|+|++|+|||+|+|||+||+++++|||+||||-
T Consensus 82 g~r~y~~~~~l~~~~~g~G~~IlSTskGimt~~eA~~~~iGGell~~V~ 130 (130)
T 1sei_A 82 GLRVYVKAHEVPRVLNGLGIAILSTSQGVLTDKEARQKGTGGEIIAYVI 130 (130)
T ss_dssp TBCCEECGGGCCCCCTTSCEEEEEETTEEEEHHHHHHHTCCEEEEEEEC
T ss_pred CCEEECCHHHHHHHHHHCEEEEEECCCCCCCHHHHHHCCCCCEEEEEEC
T ss_conf 6203636435244553340999978997223899998299968999989
No 2
>3bbn_H Ribosomal protein S8; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=100.00 E-value=0 Score=289.16 Aligned_cols=127 Identities=31% Similarity=0.595 Sum_probs=117.9
Q ss_pred CHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHCCCEEEEEEEECCCCEEEEEEECCCCCC--CCEE--CCCEEE
Q ss_conf 778999975254885799789951757899999977631210017998348720478872167654--3000--141676
Q gi|254780247|r 2 SCLGDMLTRIRNANLRYKPSVVIPFSRLHARVLDVLKTEGYIGEYCEIDAGKGRIQLKVDLKYHNG--ASVI--RKIDCV 77 (129)
Q Consensus 2 D~iad~lt~IrNA~~~~k~~v~ip~Skl~~~il~iL~~eGyI~~~~~~~~~~~~~~i~v~Lky~~~--~~vi--~~i~~i 77 (129)
||||||||+||||++|+|.+|.+|+||+++++|++|++||||++|++.+++.. ..+.|+|+|..+ .|++ ..+++|
T Consensus 4 D~iaD~ltrIrNa~~a~k~~v~ip~Skl~~~il~iL~~eGyI~~~~~~~~~~~-~~i~i~Lky~~~~~~~~~~~~~ikri 82 (134)
T 3bbn_H 4 DTIADIITCIRNADMNRKGTVRIVSTNITENIVKILLREGFIENARKHQERNK-YFLVLTLRHRRNKKGPYLNTFHLKRV 82 (134)
T ss_dssp CHHHHHHHHHHHHHHTTCSEEEEECCHHHHHHTHHHHTTTSSSCEEEEESSSC-EEEEEECCBCCCSSSCCBSCSCEEES
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHCCCEEEEEEEECCCC-CCEEEEEECCCCCCCCEEEEEEEEEE
T ss_conf 70999999877398769998996260899999999998892734699704665-42799997035888761210047995
Q ss_pred ECCCCCEECCHHHCCCHHCCCCEEEEECCCCEECHHHHHHCCCCCEEEEEEC
Q ss_conf 4612120328111711104971899818866003799996499958999989
Q gi|254780247|r 78 SKPGRRLYSSFKDIPQVCNGLGIMIVTTSKGVMAGHQARECKVGGEVLCSVF 129 (129)
Q Consensus 78 SkP~~r~y~~~~~l~~~~~g~G~~IiSTskGimt~~eA~~~~iGGeil~~v~ 129 (129)
||||+|+|.+++++|++.+|+|++|+|||+|||||+||+++++|||+||+||
T Consensus 83 SkPg~RvY~~~~~l~~~~~glGi~IlSTskGvmt~~eA~~~~vGGElLc~V~ 134 (134)
T 3bbn_H 83 SRPGLRIYSNYQRIPRILGGMGIAILSTSRGIMTDREARLEGIGGEILCYIW 134 (134)
T ss_dssp SBTTBCCEECSSSCCCGGGTTSEEEEEESSSEECTTHHHHHTCCEEEEEEEC
T ss_pred CCCCCEEECCHHHCCCCCCCCEEEEEECCCCEEEHHHHHHHCCCCEEEEEEC
T ss_conf 4688405258223673126635999845986467899998099968999989
No 3
>1s03_H 30S ribosomal protein S8; protein-RNA complex, SPC operon, transcription/RNA complex; 2.70A {Escherichia coli} SCOP: d.140.1.1 PDB: 1p6g_H 1p87_H 2avy_H 2aw7_H 2i2p_H 2i2u_H 2qal_H* 2qan_H* 2qb9_H* 2qbb_H* 2qbd_H 2qbf_H 2qbh_H* 2qbj_H* 2qou_H* 2qow_H* 2qoy_H* 2qp0_H* 2vho_H 2vhp_H ...
Probab=100.00 E-value=0 Score=286.33 Aligned_cols=126 Identities=42% Similarity=0.732 Sum_probs=121.8
Q ss_pred CCHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHCCCEEEEEEEECCCCEEEEEEECCCCCCCCEECCCEEEECC
Q ss_conf 97789999752548857997899517578999999776312100179983487204788721676543000141676461
Q gi|254780247|r 1 MSCLGDMLTRIRNANLRYKPSVVIPFSRLHARVLDVLKTEGYIGEYCEIDAGKGRIQLKVDLKYHNGASVIRKIDCVSKP 80 (129)
Q Consensus 1 mD~iad~lt~IrNA~~~~k~~v~ip~Skl~~~il~iL~~eGyI~~~~~~~~~~~~~~i~v~Lky~~~~~vi~~i~~iSkP 80 (129)
.|||||||++|+||+++++.+|.+|+||+++++|++|++||||++|+..++++. .++|.|+|.+++|+|+++++||||
T Consensus 3 ~D~iad~l~~I~NA~~a~k~~v~ip~Skl~~~il~iL~~eGyI~~f~~~~~~~~--~i~i~Lky~~~~~vi~~~~~iSkp 80 (129)
T 1s03_H 3 QDPIADMLTRIRNGQAANKAAVTMPSSKLKVAIANVLKEEGFIEDFKVEGDTKP--ELELTLKYFQGKAVVESIQRVSRP 80 (129)
T ss_dssp CCHHHHHHHHHHHHHHTTCSEEEEECCHHHHHHHHHHHHTTSEEEEEEECSSSC--EEEEEECBSSSSBSCSCEEECSBT
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHCCCCCCCEECCCCCE--EEEEEEECCCCCEEECCCEEECCC
T ss_conf 767999999857088669988996061999999999987795665578258960--899998637998645054574489
Q ss_pred CCCEECCHHHCCCHHCCCCEEEEECCCCEECHHHHHHCCCCCEEEEEE
Q ss_conf 212032811171110497189981886600379999649995899998
Q gi|254780247|r 81 GRRLYSSFKDIPQVCNGLGIMIVTTSKGVMAGHQARECKVGGEVLCSV 128 (129)
Q Consensus 81 ~~r~y~~~~~l~~~~~g~G~~IiSTskGimt~~eA~~~~iGGeil~~v 128 (129)
|+|+|.++++||++.+|+|++|+|||+|||||+||+++++|||+||||
T Consensus 81 g~r~y~~~~~l~~~~~g~G~~IlSTskGimt~~eA~~~~iGGelL~~V 128 (129)
T 1s03_H 81 GLRIYKRKDELPKVMAGLGIAVVSTSKGVMTDRAARQAGLGGEIICYV 128 (129)
T ss_dssp TBCCEECGGGSCCSCSSSCEEEEEETTEEEEHHHHHHHTCCEEEEEEE
T ss_pred CCCEECCHHHHHHHHHHCCEEEEECCCCEEEHHHHHHHCCCCEEEEEE
T ss_conf 943314754655544105569960697637799999849996899998
No 4
>2vqe_H 30S ribosomal protein S8, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: d.140.1.1 PDB: 1eg0_E* 1fka_H 1gix_K* 1hnw_H* 1hnx_H* 1hnz_H* 1hr0_H 1ibk_H* 1ibl_H* 1ibm_H 1j5e_H 1jgo_K* 1jgp_K* 1jgq_K* 1ml5_K* 1n32_H* 1n33_H* 1n34_H 1n36_H 1pns_H ...
Probab=100.00 E-value=0 Score=280.89 Aligned_cols=128 Identities=44% Similarity=0.702 Sum_probs=118.8
Q ss_pred CCHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHCCCEEEEEEEECCCCEEEEEEE--------CCCCCCCCEEC
Q ss_conf 9778999975254885799789951757899999977631210017998348720478872--------16765430001
Q gi|254780247|r 1 MSCLGDMLTRIRNANLRYKPSVVIPFSRLHARVLDVLKTEGYIGEYCEIDAGKGRIQLKVD--------LKYHNGASVIR 72 (129)
Q Consensus 1 mD~iad~lt~IrNA~~~~k~~v~ip~Skl~~~il~iL~~eGyI~~~~~~~~~~~~~~i~v~--------Lky~~~~~vi~ 72 (129)
.|||||||++|+||+++++.+|.+|+||+++++|++|++||||++|++.+++.... +.+. ++|.++.|+|+
T Consensus 3 ~D~iaD~l~~I~Na~~a~k~~v~ip~Skl~~~il~iL~~eGyI~~f~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~vI~ 81 (138)
T 2vqe_H 3 TDPIADMLTRIRNATRVYKESTDVPASRFKEEILRILAREGFIKGYERVDVDGKPY-LRVYLKYGPRRQGPDPRPEQVIH 81 (138)
T ss_dssp SCHHHHHHHHHHHHHHTTCSCCCCBCCHHHHHHHHHHHHTTSSSEEEEEEETTEEE-EEEECCBCCCCSSSCCCCCBSCS
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHCCCCCCCEEECCCCCCE-EEEEEECHHCCCCCCCCCCCCEE
T ss_conf 66699999987739876998799626089999999999879866642441578735-78876100002356778873210
Q ss_pred CCEEEECCCCCEECCHHHCCCHHCCCCEEEEECCCCEECHHHHHHCCCCCEEEEEEC
Q ss_conf 416764612120328111711104971899818866003799996499958999989
Q gi|254780247|r 73 KIDCVSKPGRRLYSSFKDIPQVCNGLGIMIVTTSKGVMAGHQARECKVGGEVLCSVF 129 (129)
Q Consensus 73 ~i~~iSkP~~r~y~~~~~l~~~~~g~G~~IiSTskGimt~~eA~~~~iGGeil~~v~ 129 (129)
.++++|+|++|+|.+++++|++.+|+|++|+|||+|||||+||+++++|||+|||||
T Consensus 82 ~i~~iSkp~~r~y~~~~~l~~~~~g~G~~IlSTskGimt~~eA~~~~iGGe~l~~V~ 138 (138)
T 2vqe_H 82 HIRRISKPGRRVYVGVKEIPRVRRGLGIAILSTSKGVLTDREARKLGVGGELICEVW 138 (138)
T ss_dssp CEEECSBTTBCCEECGGGCCCGGGGTSEEEEEETTEEEEHHHHHHTTCCEEEEEEEC
T ss_pred EEEEECCCCCCCCCCHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHCCCCEEEEEEC
T ss_conf 036860432101047867655318855899987977311899998299977999989
No 5
>1i6u_A 30S ribosomal protein S8P; protein-RNA interactions, ribosome, RNA, X-RAY crystallography; 2.60A {Methanocaldococcus jannaschii} SCOP: d.140.1.1
Probab=100.00 E-value=0 Score=280.93 Aligned_cols=125 Identities=34% Similarity=0.499 Sum_probs=117.9
Q ss_pred CCHHHHHHHHHHHHHHCCCCEEEE-ECCHHHHHHHHHHHHCCCEEEEEEEECCCCEEEEEEECCCC-CCCCEECCCEEEE
Q ss_conf 977899997525488579978995-17578999999776312100179983487204788721676-5430001416764
Q gi|254780247|r 1 MSCLGDMLTRIRNANLRYKPSVVI-PFSRLHARVLDVLKTEGYIGEYCEIDAGKGRIQLKVDLKYH-NGASVIRKIDCVS 78 (129)
Q Consensus 1 mD~iad~lt~IrNA~~~~k~~v~i-p~Skl~~~il~iL~~eGyI~~~~~~~~~~~~~~i~v~Lky~-~~~~vi~~i~~iS 78 (129)
|||||||||+||||++++|++|.+ |+||++++||+||++||||++|++.++++.+ .+.|.|+|. +++|+|++++++|
T Consensus 4 ~D~iaD~ltrIrNa~~a~~~~V~i~P~Sk~~~~il~iL~~eGyI~~~~~~~~~~~~-~i~i~Lk~~~~~~~~i~~~~~vS 82 (130)
T 1i6u_A 4 MDPLANALNHISNCERVGKKVVYIKPASKLIGRVLKVMQDNGYIGEFEFIEDGRAG-IFKVELIGKINKCGAIKPRFPVK 82 (130)
T ss_dssp CCHHHHHHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHTTSSCCEEEECCSSSC-EEEEECCSCCSCEEECSSCCEEC
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCC-CEEEEEEECCCCCCCCCCEEEEC
T ss_conf 57799999986749885998799964708999999999987983137874058766-13899985146778655457855
Q ss_pred CCCCCEECCHHHCCCHHCCCCEEEEECCCCEECHHHHHHCCCCCEEEEEEC
Q ss_conf 612120328111711104971899818866003799996499958999989
Q gi|254780247|r 79 KPGRRLYSSFKDIPQVCNGLGIMIVTTSKGVMAGHQARECKVGGEVLCSVF 129 (129)
Q Consensus 79 kP~~r~y~~~~~l~~~~~g~G~~IiSTskGimt~~eA~~~~iGGeil~~v~ 129 (129)
+|++|.| .++|++.+|+|++|+|||+|||||+||+++++|||+||+||
T Consensus 83 kpg~r~~---~~~~~~~~~lGi~IlSTskGimt~~eAr~~~vGGEllc~V~ 130 (130)
T 1i6u_A 83 KFGYEKF---EKRYLPARDFGILIVSTTQGVMSHEEAKKRGLGGRLLAYVY 130 (130)
T ss_dssp TTCCHHH---HHHHCSSTTCCEEEEEETTEEEEHHHHHHTTCCEEEEEEEC
T ss_pred CCCCEEC---HHCCCCCCCCEEEEEECCCCCCCHHHHHHCCCCCEEEEEEC
T ss_conf 8874120---01263669978999978931047599997299974999989
No 6
>2zkq_h 40S ribosomal protein S15AE; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} PDB: 1s1h_H 3jyv_H*
Probab=100.00 E-value=9.2e-44 Score=265.31 Aligned_cols=125 Identities=34% Similarity=0.500 Sum_probs=115.9
Q ss_pred CCHHHHHHHHHHHHHHCCCCEEEE-ECCHHHHHHHHHHHHCCCEEEEEEEECCCCEEEEEEECCCC-CCCCEECCCEEEE
Q ss_conf 977899997525488579978995-17578999999776312100179983487204788721676-5430001416764
Q gi|254780247|r 1 MSCLGDMLTRIRNANLRYKPSVVI-PFSRLHARVLDVLKTEGYIGEYCEIDAGKGRIQLKVDLKYH-NGASVIRKIDCVS 78 (129)
Q Consensus 1 mD~iad~lt~IrNA~~~~k~~v~i-p~Skl~~~il~iL~~eGyI~~~~~~~~~~~~~~i~v~Lky~-~~~~vi~~i~~iS 78 (129)
|||||||||+||||++++|.+|.+ |+||++.++|++|++||||++|++.++++.+ .+.|.|+|. +++++|+++.++|
T Consensus 4 ~D~iaD~ltrIrNA~~~~k~~v~i~P~Skl~~~il~iL~~eGyI~~~~~~~~~~~~-~~~i~L~~~~~~~~~i~~r~~vs 82 (130)
T 2zkq_h 4 MNVLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAG-KIVVNLTGRLNKCGVISPRFDVQ 82 (130)
T ss_dssp CCHHHHHHHHHHHHHHHTCSEEEESCCCHHHHHHHHHHHHTTSSCCEEEECCSSSC-EEEEECCSCCSCEEECSSCCEEC
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCHHCEEEECCCCCC-EEEEEEECCCCCCCCCCCCEEEC
T ss_conf 36799999985719875897699860608899999999985973000670246787-04688853588878766724866
Q ss_pred CCCCCEECCHHHCCCHHCCCCEEEEECCCCEECHHHHHHCCCCCEEEEEEC
Q ss_conf 612120328111711104971899818866003799996499958999989
Q gi|254780247|r 79 KPGRRLYSSFKDIPQVCNGLGIMIVTTSKGVMAGHQARECKVGGEVLCSVF 129 (129)
Q Consensus 79 kP~~r~y~~~~~l~~~~~g~G~~IiSTskGimt~~eA~~~~iGGeil~~v~ 129 (129)
+|+.+.|.+ ..+| .+|+|++|+|||+|||||+||+++++|||+|||||
T Consensus 83 ~~~~~~~~~-~~~~--~~g~Gi~IlSTskGimt~~eAr~~~vGGElL~~vy 130 (130)
T 2zkq_h 83 LKDLEKWQN-NLLP--SRQFGFIVLTTSAGIMDHEEARRKHTGGKILGFFF 130 (130)
T ss_dssp SSTHHHHHH-HHCS--STTCCEEEEEETTEEEEHHHHHHHTCCEEEEEEEC
T ss_pred CCCCHHHHC-CCCC--CCCCEEEEECCCCCCCCHHHHHHHCCCCEEEEEEC
T ss_conf 865034534-6577--88824898328721012799998298963999979
No 7
>3iag_C Recombining binding protein suppressor of hairless; protein-DNA complex, signaling, transcription, notch, activator, alternative splicing; HET: XYL; 2.00A {Mus musculus} PDB: 3brg_C* 3nbn_A 2f8x_C
Probab=50.60 E-value=12 Score=17.41 Aligned_cols=46 Identities=22% Similarity=0.343 Sum_probs=27.9
Q ss_pred CCEEEEEEECCCCCCCC----EECCCEEEECCCCCEECCHHHCCCHHCCC
Q ss_conf 72047887216765430----00141676461212032811171110497
Q gi|254780247|r 53 KGRIQLKVDLKYHNGAS----VIRKIDCVSKPGRRLYSSFKDIPQVCNGL 98 (129)
Q Consensus 53 ~~~~~i~v~Lky~~~~~----vi~~i~~iSkP~~r~y~~~~~l~~~~~g~ 98 (129)
+....+.+.+-|.++.. .-++++.||||+++.-.....-..+.+|-
T Consensus 110 rK~f~l~~~l~~~~~~~ig~F~Sk~IkVISKPSKKkqs~Kn~dlcI~sGs 159 (422)
T 3iag_C 110 RKHFMLSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLCIASGT 159 (422)
T ss_dssp CSEECEEEEEEETTCCEEEEEECCCEEEESSCCCSCCCGGGGGGBCBTTE
T ss_pred CCEEEEEEEEECCCCCCEEEECCCCCEEEECCCHHHHCCCCCCEEECCCC
T ss_conf 30269999996179872578747760488661020100023011643799
No 8
>2hgc_A YJCQ protein; SR346, structure, autostructure, NESG, PSI-2, northeast structural genomics consortium, protein structure initiative; NMR {Bacillus subtilis} SCOP: a.4.5.77
Probab=43.69 E-value=4.4 Score=19.83 Aligned_cols=53 Identities=21% Similarity=0.142 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHCCCEEEEEEEECCCCE--EEEEEECC---CCCCCCEECCCEEEECC
Q ss_conf 7899999977631210017998348720--47887216---76543000141676461
Q gi|254780247|r 28 RLHARVLDVLKTEGYIGEYCEIDAGKGR--IQLKVDLK---YHNGASVIRKIDCVSKP 80 (129)
Q Consensus 28 kl~~~il~iL~~eGyI~~~~~~~~~~~~--~~i~v~Lk---y~~~~~vi~~i~~iSkP 80 (129)
..-..++.-|.++|||+|+...++..+. ....|+++ |-+..+..++.....|+
T Consensus 31 ~~~~~il~mL~d~GyI~Gv~~~~~~~~v~~~~~~IT~~GleYL~ENS~MkKayk~lKe 88 (102)
T 2hgc_A 31 DQFDDAVNFLKREGYIIGVHYSDDRPHLYKLGPELTEKGENYLKENGTWSKAYKTIKE 88 (102)
T ss_dssp HHHHHHHHHHHHHTSEECCEESSSSEECCSSCCEECHHHHHHHHHHTCSCCC------
T ss_pred HHHHHHHHHHHHCCCCCCEEEECCCCCEEEECCEECHHHHHHHHHCHHHHHHHHHHHH
T ss_conf 9999999999977885307986089845765671567889999987089999999999
No 9
>3brd_A LIN-12 and GLP-1 phenotype protein 1, isoform A; protein-DNA complex, signaling, transcription, notch; HET: DNA; 2.21A {Caenorhabditis elegans} SCOP: b.1.18.1 b.2.5.8 b.42.7.1 PDB: 2fo1_A 1ttu_A* 3brf_A*
Probab=29.04 E-value=25 Score=15.64 Aligned_cols=42 Identities=26% Similarity=0.413 Sum_probs=23.0
Q ss_pred EEEEECCCCCCCC----EECCCEEEECCCCCEECCHH-H--CCCHHCCC
Q ss_conf 7887216765430----00141676461212032811-1--71110497
Q gi|254780247|r 57 QLKVDLKYHNGAS----VIRKIDCVSKPGRRLYSSFK-D--IPQVCNGL 98 (129)
Q Consensus 57 ~i~v~Lky~~~~~----vi~~i~~iSkP~~r~y~~~~-~--l~~~~~g~ 98 (129)
.+.+.+-+.++.- .-++|+.|||||++.-.... + ...+..|-
T Consensus 156 ~l~lk~~~~~g~~iG~F~S~~IkVISKPSKKkqs~Kn~d~~~LcI~sGs 204 (477)
T 3brd_A 156 DLNAQFFYGCGMEIGGFVSQRIKVISKPSKKKQSMKNTDCKYLCIASGT 204 (477)
T ss_dssp CCEEEEEETTSCEEEEEECCCEEEESSCCCCC-----CCHHHHBCBTTS
T ss_pred EEEEEEECCCCCEEEEECCCCCEEEECCCCCCCCCCCCCCCCEEECCCC
T ss_conf 8999995179866999647762157267513100025555433554899
No 10
>2esh_A Conserved hypothetical protein TM0937; APC5794, X-RAY, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima MSB8} SCOP: a.4.5.61
Probab=17.45 E-value=52 Score=13.80 Aligned_cols=37 Identities=16% Similarity=0.188 Sum_probs=24.1
Q ss_pred ECCHHHHHHHHHHHHCCCEEEEEEEECCCCEEEEEEE
Q ss_conf 1757899999977631210017998348720478872
Q gi|254780247|r 25 PFSRLHARVLDVLKTEGYIGEYCEIDAGKGRIQLKVD 61 (129)
Q Consensus 25 p~Skl~~~il~iL~~eGyI~~~~~~~~~~~~~~i~v~ 61 (129)
+..-....+|+-|.++|||.+.....+++.++...++
T Consensus 47 ~~~gtiY~~L~rLe~~GlI~~~~~~~~g~~rk~Y~iT 83 (118)
T 2esh_A 47 GHMGNIYRVLADLEESGFLSTEWDTTVSPPRKIYRIT 83 (118)
T ss_dssp CCCCCHHHHHHHHHHTTSEEEEEECSSSSCEEEEEEC
T ss_pred CCCCCHHHHHHHHHHCCCEEEEEECCCCCCCEEEEEC
T ss_conf 8976079999999988976999731689886798989
Done!