RPSBLAST alignment of GI: 254780247 and protein with PDBid: 1s03
>1s03_H 30S ribosomal protein S8; protein-RNA complex, SPC operon, transcription/RNA complex; 2.70A {Escherichia coli} SCOP: d.140.1.1 PDB: 1p6g_H 1p87_H 2avy_H 2aw7_H 2i2p_H 2i2u_H 2qal_H* 2qan_H* 2qb9_H* 2qbb_H* 2qbd_H 2qbf_H 2qbh_H* 2qbj_H* 2qou_H* 2qow_H* 2qoy_H* 2qp0_H* 2vho_H 2vhp_H ... Length = 129
Score = 134 bits (338), Expect = 7e-33
Identities = 52/125 (41%), Positives = 77/125 (61%), Gaps = 2/125 (1%)
Query: 4 LGDMLTRIRNANLRYKPSVVIPFSRLHARVLDVLKTEGYIGEYCEIDAGKGRIQLKVDLK 63
+ DMLTRIRN K +V +P S+L + +VLK EG+I ++ K + ++ LK
Sbjct: 6 IADMLTRIRNGQAANKAAVTMPSSKLKVAIANVLKEEGFIEDFKVEGDTKPEL--ELTLK 63
Query: 64 YHNGASVIRKIDCVSKPGRRLYSSFKDIPQVCNGLGIMIVTTSKGVMAGHQARECKVGGE 123
Y G +V+ I VS+PG R+Y ++P+V GLGI +V+TSKGVM AR+ +GGE
Sbjct: 64 YFQGKAVVESIQRVSRPGLRIYKRKDELPKVMAGLGIAVVSTSKGVMTDRAARQAGLGGE 123
Query: 124 VLCSV 128
++C V
Sbjct: 124 IICYV 128