Query gi|254780248|ref|YP_003064661.1| 30S ribosomal protein S14 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 101 No_of_seqs 107 out of 1176 Neff 5.4 Searched_HMMs 39220 Date Tue May 24 06:52:08 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780248.hhm -d /home/congqian_1/database/cdd/Cdd.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 PRK08881 rpsN 30S ribosomal pr 100.0 5.9E-44 0 288.3 10.2 101 1-101 1-101 (101) 2 PRK06911 rpsN 30S ribosomal pr 100.0 2.7E-43 0 284.3 10.3 100 1-101 1-100 (100) 3 CHL00074 rps14 ribosomal prote 100.0 9.1E-43 0 281.0 10.0 100 1-101 1-100 (100) 4 KOG1741 consensus 100.0 8.3E-34 2.1E-38 226.5 9.3 101 1-101 3-103 (103) 5 PRK08061 rpsN 30S ribosomal pr 99.9 1.6E-23 4.2E-28 163.9 1.8 51 49-101 11-61 (61) 6 COG0199 RpsN Ribosomal protein 99.9 1.6E-22 4E-27 157.9 2.8 60 42-101 2-61 (61) 7 pfam00253 Ribosomal_S14 Riboso 99.8 7.8E-21 2E-25 147.6 2.5 54 47-100 2-55 (55) 8 PRK05766 rps14P 30S ribosomal 93.4 0.033 8.4E-07 34.3 1.2 40 51-90 4-45 (52) 9 PTZ00218 40S ribosomal protein 91.8 0.067 1.7E-06 32.4 1.0 30 61-90 16-47 (54) 10 KOG3506 consensus 84.0 0.52 1.3E-05 27.0 1.4 29 62-90 19-49 (56) 11 pfam09541 consensus 53.8 14 0.00036 18.3 3.0 56 41-96 2-70 (120) 12 TIGR02018 his_ut_repres histid 45.9 9.5 0.00024 19.3 1.1 21 74-94 32-56 (234) 13 pfam06353 DUF1062 Protein of u 43.8 14 0.00037 18.2 1.8 32 67-98 102-134 (142) 14 KOG2290 consensus 41.4 6.8 0.00017 20.2 -0.2 29 60-89 386-414 (652) 15 pfam10346 Con-6 Conidiation pr 38.1 34 0.00086 16.0 2.9 28 25-52 8-35 (36) 16 pfam10654 DUF2481 Protein of u 37.1 36 0.00091 15.8 4.2 46 17-63 6-51 (126) 17 TIGR01764 excise DNA binding d 35.7 22 0.00055 17.2 1.6 22 76-97 10-31 (49) 18 pfam05930 Phage_AlpA Prophage 31.0 36 0.00093 15.8 2.1 29 70-98 6-34 (51) 19 pfam04831 Popeye Popeye protei 25.3 36 0.00092 15.8 1.3 23 72-94 8-32 (154) 20 TIGR01672 AphA HAD superfamily 22.4 26 0.00065 16.7 0.1 18 59-76 131-149 (248) 21 PRK05797 consensus 20.8 30 0.00077 16.3 0.2 53 47-99 615-667 (869) 22 PRK05415 hypothetical protein; 20.5 65 0.0017 14.2 1.8 26 66-92 231-256 (338) No 1 >PRK08881 rpsN 30S ribosomal protein S14; Reviewed Probab=100.00 E-value=5.9e-44 Score=288.29 Aligned_cols=101 Identities=54% Similarity=0.918 Sum_probs=100.8 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCHHHHHHCHH Q ss_conf 91268999999999999999999999999834879898999999999720860443244402214356641144042562 Q gi|254780248|r 1 MAKVSAVERNKRRLRVVAKQASKRLALKKIVMDKSVTLEERFDAMLQLGSLPRDGSRVRVRNRCEISGRSRGVYRDFRLS 80 (101) Q Consensus 1 Makks~i~rd~kRr~l~~k~~~kR~~lk~~~~~~~l~~~~r~~a~~kL~~Lprnss~tRi~NRC~~TGR~Rgv~r~f~lS 80 (101) |||||+|+||.+|++|+++|+.+|..||++++|+++|++++++|+.+|++||+||||||++|||++||||||||++|||| T Consensus 1 MAkks~i~rd~kRr~l~~k~~~kR~~lK~~~~n~~l~~e~r~~a~~kL~~LPrnss~~RirNRC~~TGR~Rg~~r~f~lS 80 (101) T PRK08881 1 MAKKSMIAREEKRKKLVAKYAAKRAELKAIIDDENLSEEERFEARLKLQKLPRDSSPTRLRNRCELTGRPRGYYRKFGLS 80 (101) T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCCCCEECCCCCCH T ss_conf 95578999999999999999999999999985779999999999999874663434177726123789976310342404 Q ss_pred HHHHHHHHHCCCCCCCCCCCC Q ss_conf 999999996589998321469 Q gi|254780248|r 81 RLALRELGGVGKIPGIIKSSW 101 (101) Q Consensus 81 Ri~fRela~~G~ipGv~KaSW 101 (101) ||+|||||+.|+||||+|||| T Consensus 81 Ri~~RelA~~G~lpGv~KaSW 101 (101) T PRK08881 81 RIKLRELAHRGEIPGVVKASW 101 (101) T ss_pred HHHHHHHHHCCCCCCEECCCC T ss_conf 999999998698888422679 No 2 >PRK06911 rpsN 30S ribosomal protein S14; Reviewed Probab=100.00 E-value=2.7e-43 Score=284.25 Aligned_cols=100 Identities=37% Similarity=0.604 Sum_probs=98.1 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCHHHHHHCHH Q ss_conf 91268999999999999999999999999834879898999999999720860443244402214356641144042562 Q gi|254780248|r 1 MAKVSAVERNKRRLRVVAKQASKRLALKKIVMDKSVTLEERFDAMLQLGSLPRDGSRVRVRNRCEISGRSRGVYRDFRLS 80 (101) Q Consensus 1 Makks~i~rd~kRr~l~~k~~~kR~~lk~~~~~~~l~~~~r~~a~~kL~~Lprnss~tRi~NRC~~TGR~Rgv~r~f~lS 80 (101) |||||+|+||.+|.+|+++|+.+|.+||+++++. .|++++++|+.+|++||+||||||++|||++|||||||||+|||| T Consensus 1 MAKkS~i~R~~kR~klv~ky~~kR~~Lk~~i~~~-~~~eer~~a~~kL~kLPRnSsp~R~rNRC~~TGRpRg~yRkFgLS 79 (100) T PRK06911 1 MAKKSMLMRESKRAKLVEKYRQRRNELKQLIKSS-DDFQVIMESQAKLAKLPVNSNPVRYVTRCKQCGRPHAVYRKFNLC 79 (100) T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCHHHHCCCH T ss_conf 9457899999999999999999999999998558-999999999999985777676178742201689864002121556 Q ss_pred HHHHHHHHHCCCCCCCCCCCC Q ss_conf 999999996589998321469 Q gi|254780248|r 81 RLALRELGGVGKIPGIIKSSW 101 (101) Q Consensus 81 Ri~fRela~~G~ipGv~KaSW 101 (101) ||+|||||+.|+||||+|||| T Consensus 80 Ri~~RelA~~G~lPGv~KaSW 100 (100) T PRK06911 80 RICLRQQLMVGNIPGGRKSSW 100 (100) T ss_pred HHHHHHHHHCCCCCCEECCCC T ss_conf 999999997697988325889 No 3 >CHL00074 rps14 ribosomal protein S14 Probab=100.00 E-value=9.1e-43 Score=281.04 Aligned_cols=100 Identities=43% Similarity=0.702 Sum_probs=98.1 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCHHHHHHCHH Q ss_conf 91268999999999999999999999999834879898999999999720860443244402214356641144042562 Q gi|254780248|r 1 MAKVSAVERNKRRLRVVAKQASKRLALKKIVMDKSVTLEERFDAMLQLGSLPRDGSRVRVRNRCEISGRSRGVYRDFRLS 80 (101) Q Consensus 1 Makks~i~rd~kRr~l~~k~~~kR~~lk~~~~~~~l~~~~r~~a~~kL~~Lprnss~tRi~NRC~~TGR~Rgv~r~f~lS 80 (101) |||||+|+||.+|++|+++|+.+|..|+++++| +++++++++|+.+|++||+||||||++|||++||||||||++|||| T Consensus 1 MAKkS~I~Rd~kR~~lv~ky~~kR~~lk~~i~~-~~~~~er~~a~~kL~kLPrnSs~~R~rNRC~~TGRpRg~~r~Fgls 79 (100) T CHL00074 1 MAKKSLIQREKKRQKLVQKYHLIRRSLKKEIKK-VSSLSEKWEIHGKLQSLPRNSAPTRLHRRCFLTGRPRGNYRDFGLS 79 (100) T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCEEECCCCCH T ss_conf 953789999999999999999999999998744-7999999999999986116556688874510579975300110424 Q ss_pred HHHHHHHHHCCCCCCCCCCCC Q ss_conf 999999996589998321469 Q gi|254780248|r 81 RLALRELGGVGKIPGIIKSSW 101 (101) Q Consensus 81 Ri~fRela~~G~ipGv~KaSW 101 (101) ||+|||||+.|+||||+|||| T Consensus 80 Ri~~RelA~~G~ipGv~KaSW 100 (100) T CHL00074 80 RHVLREMAHACLLPGVTKSSW 100 (100) T ss_pred HHHHHHHHHCCCCCCEECCCC T ss_conf 899999998698988313779 No 4 >KOG1741 consensus Probab=100.00 E-value=8.3e-34 Score=226.54 Aligned_cols=101 Identities=39% Similarity=0.673 Sum_probs=99.7 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCHHHHHHCHH Q ss_conf 91268999999999999999999999999834879898999999999720860443244402214356641144042562 Q gi|254780248|r 1 MAKVSAVERNKRRLRVVAKQASKRLALKKIVMDKSVTLEERFDAMLQLGSLPRDGSRVRVRNRCEISGRSRGVYRDFRLS 80 (101) Q Consensus 1 Makks~i~rd~kRr~l~~k~~~kR~~lk~~~~~~~l~~~~r~~a~~kL~~Lprnss~tRi~NRC~~TGR~Rgv~r~f~lS 80 (101) |+.++.|.||.+|++++++|+..|..+|+|.+|++||...+.+|..||++||+||.||+|+|||+.||||||||+.|+|| T Consensus 3 ~~~~~r~~Rd~krRkl~~e~~~~R~slk~i~knp~LP~~~r~ea~~kl~alPrns~ptrI~NRCv~TGR~R~v~r~frLs 82 (103) T KOG1741 3 GAKKWRILRDVKRRKLFKEYELERRSLKEISKNPILPEKLRDEAAEKLQALPRNSAPTRIKNRCVFTGRPRGVYRDFRLS 82 (103) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHH T ss_conf 15779998899999999999999999999981886129999989999852765654299998888438864320102368 Q ss_pred HHHHHHHHHCCCCCCCCCCCC Q ss_conf 999999996589998321469 Q gi|254780248|r 81 RLALRELGGVGKIPGIIKSSW 101 (101) Q Consensus 81 Ri~fRela~~G~ipGv~KaSW 101 (101) ||+||++|+.|.||||+|||| T Consensus 83 R~~FR~~A~~~~LpGv~rasW 103 (103) T KOG1741 83 RHVFRELADAGALPGVTRASW 103 (103) T ss_pred HHHHHHHHHHCCCCCCCCCCC T ss_conf 899999887145767522469 No 5 >PRK08061 rpsN 30S ribosomal protein S14; Reviewed Probab=99.87 E-value=1.6e-23 Score=163.90 Aligned_cols=51 Identities=47% Similarity=0.874 Sum_probs=46.6 Q ss_pred HHCCHHHHHHHHCCCCCCCCCCCHHHHHHCHHHHHHHHHHHCCCCCCCCCCCC Q ss_conf 20860443244402214356641144042562999999996589998321469 Q gi|254780248|r 49 GSLPRDGSRVRVRNRCEISGRSRGVYRDFRLSRLALRELGGVGKIPGIIKSSW 101 (101) Q Consensus 49 ~~Lprnss~tRi~NRC~~TGR~Rgv~r~f~lSRi~fRela~~G~ipGv~KaSW 101 (101) ++-|+. +||++|||.+|||||||||+||||||+|||+|+.|+||||+|||| T Consensus 11 ~~~~Kf--~tR~~NRC~~tGRprg~~R~FglsRi~fRelA~~G~iPGv~KsSW 61 (61) T PRK08061 11 KRKPKF--KVRAYTRCERCGRPHSVYRKFGLCRICFRELAYKGQIPGVKKASW 61 (61) T ss_pred CCCCCC--CCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHCCCCCCEECCCC T ss_conf 549888--740101025689876651214616999999997796787662679 No 6 >COG0199 RpsN Ribosomal protein S14 [Translation, ribosomal structure and biogenesis] Probab=99.85 E-value=1.6e-22 Score=157.90 Aligned_cols=60 Identities=52% Similarity=0.835 Sum_probs=58.3 Q ss_pred HHHHHHHHHCCHHHHHHHHCCCCCCCCCCCHHHHHHCHHHHHHHHHHHCCCCCCCCCCCC Q ss_conf 999999720860443244402214356641144042562999999996589998321469 Q gi|254780248|r 42 FDAMLQLGSLPRDGSRVRVRNRCEISGRSRGVYRDFRLSRLALRELGGVGKIPGIIKSSW 101 (101) Q Consensus 42 ~~a~~kL~~Lprnss~tRi~NRC~~TGR~Rgv~r~f~lSRi~fRela~~G~ipGv~KaSW 101 (101) +.++++|+++|+|++++|++|||.+|||||||||+|+|||++|||+|+.|+||||+|||| T Consensus 2 ~~a~~~~~~~p~~~~~~r~~nRC~~cGRprgv~Rkf~lcR~cfRE~A~~g~ipGv~KasW 61 (61) T COG0199 2 AMAKLKLKALPRPKSPGRGRNRCRRCGRPRGVIRKFGLCRICFRELAHKGEIPGVKKASW 61 (61) T ss_pred CHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEECCC T ss_conf 213344531788776555633130369973233555437999999861068887472569 No 7 >pfam00253 Ribosomal_S14 Ribosomal protein S14p/S29e. This family includes both ribosomal S14 from prokaryotes and S29 from eukaryotes. Probab=99.81 E-value=7.8e-21 Score=147.59 Aligned_cols=54 Identities=54% Similarity=0.911 Sum_probs=52.8 Q ss_pred HHHHCCHHHHHHHHCCCCCCCCCCCHHHHHHCHHHHHHHHHHHCCCCCCCCCCC Q ss_conf 972086044324440221435664114404256299999999658999832146 Q gi|254780248|r 47 QLGSLPRDGSRVRVRNRCEISGRSRGVYRDFRLSRLALRELGGVGKIPGIIKSS 100 (101) Q Consensus 47 kL~~Lprnss~tRi~NRC~~TGR~Rgv~r~f~lSRi~fRela~~G~ipGv~KaS 100 (101) +|+++|+||+++|++|||++|||+||||++|||||++|||+|+.|+|||++||| T Consensus 2 ~l~~~~~~ss~~r~~nRC~~tGR~rgv~rkf~lsR~~fRe~A~~g~i~G~~Kas 55 (55) T pfam00253 2 KLSKLPRNSSPTRGRNRCVLTGRPRGVIRKFGLSRICFRELAHKGLIPGVKKAS 55 (55) T ss_pred CCCCCCCCCCHHHHHCEECCCCCCCEEECCCCCHHHHHHHHHHCCCCCCEECCC T ss_conf 423176756606762300488997675435561299999999769788867179 No 8 >PRK05766 rps14P 30S ribosomal protein S14P; Reviewed Probab=93.36 E-value=0.033 Score=34.29 Aligned_cols=40 Identities=28% Similarity=0.522 Sum_probs=31.3 Q ss_pred CCHHHHHHHHCCCCCCCCCCCHHHHHHC--HHHHHHHHHHHC Q ss_conf 8604432444022143566411440425--629999999965 Q gi|254780248|r 51 LPRDGSRVRVRNRCEISGRSRGVYRDFR--LSRLALRELGGV 90 (101) Q Consensus 51 Lprnss~tRi~NRC~~TGR~Rgv~r~f~--lSRi~fRela~~ 90 (101) .|+.-.-.+--+.|.++|+..|++++|| |||-+|||.|.. T Consensus 4 ~p~~r~~G~gsr~Cr~Cg~~~glIrKYgL~lCRqCFRE~A~~ 45 (52) T PRK05766 4 PPKERKYGKGARRCRRCGRKGGLIRKYGLYLCRQCFREVAPK 45 (52) T ss_pred CCCCCCCCCCCCEEEECCCCCCEEEEECCHHHHHHHHHHHHH T ss_conf 998876788878125269976678870616588999988987 No 9 >PTZ00218 40S ribosomal protein S29; Provisional Probab=91.76 E-value=0.067 Score=32.41 Aligned_cols=30 Identities=20% Similarity=0.534 Sum_probs=26.4 Q ss_pred CCCCCCCCCCCHHHHHHC--HHHHHHHHHHHC Q ss_conf 022143566411440425--629999999965 Q gi|254780248|r 61 RNRCEISGRSRGVYRDFR--LSRLALRELGGV 90 (101) Q Consensus 61 ~NRC~~TGR~Rgv~r~f~--lSRi~fRela~~ 90 (101) -..|.++|...|++|+|| +||-+|||.|.. T Consensus 16 Sr~CrvC~~~~glIRKYgLn~CRqCFRe~A~~ 47 (54) T PTZ00218 16 SRECRVCSNRHGLIRKYGLNVCRQCFRENAEL 47 (54) T ss_pred CCEEECCCCCCCEEEEECCHHHHHHHHHHHHH T ss_conf 77338268973278872641468899887776 No 10 >KOG3506 consensus Probab=83.97 E-value=0.52 Score=26.98 Aligned_cols=29 Identities=24% Similarity=0.567 Sum_probs=25.1 Q ss_pred CCCCCCCCCCHHHHHHCH--HHHHHHHHHHC Q ss_conf 221435664114404256--29999999965 Q gi|254780248|r 62 NRCEISGRSRGVYRDFRL--SRLALRELGGV 90 (101) Q Consensus 62 NRC~~TGR~Rgv~r~f~l--SRi~fRela~~ 90 (101) .-|.+++.-+|.+++||| ||.+|||.|.- T Consensus 19 rsC~vCsn~~gLIrKYGL~vcr~cfr~~a~d 49 (56) T KOG3506 19 RSCRVCSNRHGLIRKYGLNVCRQCFREYAND 49 (56) T ss_pred CCEEEECCHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 4046506525589997268859999963403 No 11 >pfam09541 consensus Probab=53.78 E-value=14 Score=18.29 Aligned_cols=56 Identities=23% Similarity=0.328 Sum_probs=46.5 Q ss_pred HHHHHHHHHHCCHHHHHHHHCCCCCCCCCC-------------CHHHHHHCHHHHHHHHHHHCCCCCCC Q ss_conf 999999972086044324440221435664-------------11440425629999999965899983 Q gi|254780248|r 41 RFDAMLQLGSLPRDGSRVRVRNRCEISGRS-------------RGVYRDFRLSRLALRELGGVGKIPGI 96 (101) Q Consensus 41 r~~a~~kL~~Lprnss~tRi~NRC~~TGR~-------------Rgv~r~f~lSRi~fRela~~G~ipGv 96 (101) |.+.+.-+.+|||+.-....|--|.+-|-. .+-|..|.--.++.-||...|+=|-. T Consensus 2 RLWHe~LI~~LPr~QLLgQhREc~ALRGngWgkkHatVdYVF~~spy~L~~Yh~lVm~EM~~RGY~~~~ 70 (120) T pfam09541 2 RLWHEDLIDKLPRQQLLGQHRECCALRGNGWGKKHATVDYVFNYSPYKLFQYHLLVMDEMQKRGYHPNE 70 (120) T ss_pred CCHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCH T ss_conf 413898996575888888999999997378898863564420278599999999999999983899996 No 12 >TIGR02018 his_ut_repres histidine utilization repressor; InterPro: IPR010248 This entry represents a proteobacterial histidine utilization repressor. It is usually found clustered with the enzymes HutUHIG so that it can regulate its own expression as well. A number of species have several paralogs and may fine-tune the regulation according to levels of degradation intermediates such as urocanate. This family belongs to the larger GntR family of transcriptional regulators.; GO: 0003677 DNA binding, 0016564 transcription repressor activity, 0006547 histidine metabolic process, 0045892 negative regulation of transcription DNA-dependent. Probab=45.94 E-value=9.5 Score=19.32 Aligned_cols=21 Identities=38% Similarity=0.627 Sum_probs=17.2 Q ss_pred HHHHCHHHHH----HHHHHHCCCCC Q ss_conf 4042562999----99999658999 Q gi|254780248|r 74 YRDFRLSRLA----LRELGGVGKIP 94 (101) Q Consensus 74 ~r~f~lSRi~----fRela~~G~ip 94 (101) ...||+||.. ||||+..|+|- T Consensus 32 ~~~~G~SRMTvnrALreLt~~G~l~ 56 (234) T TIGR02018 32 VAQFGVSRMTVNRALRELTDAGLLE 56 (234) T ss_pred HHHHCCCHHHHHHHHHHHHHCCCEE T ss_conf 9774872335789999887568188 No 13 >pfam06353 DUF1062 Protein of unknown function (DUF1062). This family consists of several hypothetical bacterial proteins of unknown function. Probab=43.78 E-value=14 Score=18.21 Aligned_cols=32 Identities=31% Similarity=0.384 Sum_probs=24.3 Q ss_pred CCCCCHHH-HHHCHHHHHHHHHHHCCCCCCCCC Q ss_conf 56641144-042562999999996589998321 Q gi|254780248|r 67 SGRSRGVY-RDFRLSRLALRELGGVGKIPGIIK 98 (101) Q Consensus 67 TGR~Rgv~-r~f~lSRi~fRela~~G~ipGv~K 98 (101) .=|.-.++ ..+||||-.+..|...|.|-|+.. T Consensus 102 ~~Rl~~Lla~~L~lSrs~l~~l~~~G~i~~~~~ 134 (142) T pfam06353 102 SLRLDRLLAEELGLSRSRLQRLIDQGQIRGVPE 134 (142) T ss_pred CCCHHHHHHHHHCCCHHHHHHHHHCCCEECCCC T ss_conf 642999999881868999999998898770575 No 14 >KOG2290 consensus Probab=41.39 E-value=6.8 Score=20.23 Aligned_cols=29 Identities=24% Similarity=0.374 Sum_probs=23.2 Q ss_pred HCCCCCCCCCCCHHHHHHCHHHHHHHHHHH Q ss_conf 402214356641144042562999999996 Q gi|254780248|r 60 VRNRCEISGRSRGVYRDFRLSRLALRELGG 89 (101) Q Consensus 60 i~NRC~~TGR~Rgv~r~f~lSRi~fRela~ 89 (101) -|--|++|||| -.+-.=|+|+|.-||+.+ T Consensus 386 pHmdC~ItGRP-CCI~~qG~CeIttreYCd 414 (652) T KOG2290 386 PHMDCQITGRP-CCIGTQGLCEITTREYCD 414 (652) T ss_pred CCEEEEECCCC-CEECCCCEEEECHHHHHH T ss_conf 75035753885-255157526631677778 No 15 >pfam10346 Con-6 Conidiation protein 6. Con-6 is the conserved N-terminal region of a family of small proteins found in fungi. It is expressed at approximately 6 hours after the induction of development and is induced just prior to major constriction-chain growth. Probab=38.13 E-value=34 Score=15.97 Aligned_cols=28 Identities=21% Similarity=0.161 Sum_probs=24.6 Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHCC Q ss_conf 9999983487989899999999972086 Q gi|254780248|r 25 LALKKIVMDKSVTLEERFDAMLQLGSLP 52 (101) Q Consensus 25 ~~lk~~~~~~~l~~~~r~~a~~kL~~Lp 52 (101) .-||+.+.|+..|.+-+..|+.+|+.+. T Consensus 8 ~G~KAal~NP~VSeeaK~~a~e~L~~~~ 35 (36) T pfam10346 8 RGYKAALHNPNVSEEAKEHAREKLEELG 35 (36) T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHC T ss_conf 7888772598531899999999999815 No 16 >pfam10654 DUF2481 Protein of unknown function (DUF2481). This is a hypothetical protein family homologous to Lmo2305 in Bacteriophage A118 systems. Probab=37.10 E-value=36 Score=15.84 Aligned_cols=46 Identities=15% Similarity=0.301 Sum_probs=29.8 Q ss_pred HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHCCC Q ss_conf 99999999999998348798989999999997208604432444022 Q gi|254780248|r 17 VAKQASKRLALKKIVMDKSVTLEERFDAMLQLGSLPRDGSRVRVRNR 63 (101) Q Consensus 17 ~~k~~~kR~~lk~~~~~~~l~~~~r~~a~~kL~~Lprnss~tRi~NR 63 (101) .+..+-+|..+-.++ |..||+.++-+.+.+|+.|-.-.---..+++ T Consensus 6 tenKarQreIIsyl~-n~dl~~~~rk~LqkeLn~Lmn~nTeeK~kt~ 51 (126) T pfam10654 6 TENKARQREIISYLI-NENLPLAERKELQKELNQLMNENTEEKQKTY 51 (126) T ss_pred HHHHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHHHHHCCHHHHHHHH T ss_conf 432899999999998-5788868999999999999860739999999 No 17 >TIGR01764 excise DNA binding domain, excisionase family; InterPro: IPR010093 An excisionase, or Xis protein, is a small protein that binds and promotes excisive recombination; it is not enzymatically active. This entry represents a number of putative excisionases and related proteins from temperate phage, plasmids, and transposons, as well as DNA binding domains of other proteins, such as a DNA modification methylase. This entry identifies mostly small proteins and N-terminal regions of large proteins, but some proteins appear to have two copies. This domain appears similar, in both sequence and predicted secondary structure (PSIPRED) to the MerR family of transcriptional regulators (IPR000551 from INTERPRO).; GO: 0003677 DNA binding. Probab=35.74 E-value=22 Score=17.15 Aligned_cols=22 Identities=18% Similarity=0.247 Sum_probs=19.4 Q ss_pred HHCHHHHHHHHHHHCCCCCCCC Q ss_conf 4256299999999658999832 Q gi|254780248|r 76 DFRLSRLALRELGGVGKIPGII 97 (101) Q Consensus 76 ~f~lSRi~fRela~~G~ipGv~ 97 (101) .-|+|+-.+++|++.|.||.++ T Consensus 10 yLgv~~~t~~~l~~~g~l~~~~ 31 (49) T TIGR01764 10 YLGVSKSTVYRLIEEGELPAYR 31 (49) T ss_pred HCCCCHHHHHHHHHCCCCCEEE T ss_conf 7199905789999718985000 No 18 >pfam05930 Phage_AlpA Prophage CP4-57 regulatory protein (AlpA). This family consists of several short bacterial and phage proteins which are related to the E. coli protein AlpA. AlpA suppress two phenotypes of a delta lon protease mutant, overproduction of capsular polysaccharide and sensitivity to UV light. Several of the sequences in this family are thought to be DNA-binding proteins. Probab=30.96 E-value=36 Score=15.78 Aligned_cols=29 Identities=31% Similarity=0.243 Sum_probs=23.0 Q ss_pred CCHHHHHHCHHHHHHHHHHHCCCCCCCCC Q ss_conf 41144042562999999996589998321 Q gi|254780248|r 70 SRGVYRDFRLSRLALRELGGVGKIPGIIK 98 (101) Q Consensus 70 ~Rgv~r~f~lSRi~fRela~~G~ipGv~K 98 (101) -.-|....|+||-.+-.+...|.+|-=.| T Consensus 6 ~~eV~~~~glsrstiyr~i~~G~FP~pik 34 (51) T pfam05930 6 LKEVEQLTGLSRSTIYRLIKDGEFPKPIK 34 (51) T ss_pred HHHHHHHHCCCHHHHHHHHHCCCCCCCEE T ss_conf 99999998989999999998799999876 No 19 >pfam04831 Popeye Popeye protein conserved region. The function of Popeye proteins is not well understood. They are predominantly expressed in cardiac and skeletal muscle. This family represents a conserved region which includes three potential transmembrane domains. Probab=25.34 E-value=36 Score=15.81 Aligned_cols=23 Identities=9% Similarity=0.323 Sum_probs=18.1 Q ss_pred HHHHHHCHHHHHHHHHHHC--CCCC Q ss_conf 1440425629999999965--8999 Q gi|254780248|r 72 GVYRDFRLSRLALRELGGV--GKIP 94 (101) Q Consensus 72 gv~r~f~lSRi~fRela~~--G~ip 94 (101) .++..++++|++|+++++. |.|- T Consensus 8 ~lF~Pl~V~r~~Fk~lv~~~~~~i~ 32 (154) T pfam04831 8 ALFLPLHVPLEVFKEITGCCECEVH 32 (154) T ss_pred HHHCCCCCCHHHHHHHHHHHHCEEE T ss_conf 9700459999999999865532787 No 20 >TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672; InterPro: IPR010025 This family of proteins is a member of the IIIB subfamily (IPR001001 from INTERPRO) of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of subfamily III and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs , all of which are found conserved in this family. AphA is a periplasmic acid phosphatase of Escherichia coli belonging to class B bacterial phosphatases , which is part of the DDDD superfamily of phosphohydrolases. The crystal structure of AphA has been determined at 2.2A and its resolution extended to 1.7A. Despite the lack of sequence homology, the AphA structure reveals a haloacid dehalogenase-like fold. This finding suggests that this fold could be conserved among members of the DDDD superfamily of phosphohydrolases. The active enzyme is a homotetramer built by using an extended N-terminal arm intertwining the four monomers. The active site of the native enzyme hosts a magnesium ion, which can be replaced by other metal ions. The structure explains the non-specific behaviour of AphA towards substrates, while a structure-based alignment with other phosphatases provides clues about the catalytic mechanism . ; GO: 0003993 acid phosphatase activity, 0030288 outer membrane-bounded periplasmic space. Probab=22.38 E-value=26 Score=16.71 Aligned_cols=18 Identities=28% Similarity=0.571 Sum_probs=12.3 Q ss_pred HHCCCCCCCCCCCH-HHHH Q ss_conf 44022143566411-4404 Q gi|254780248|r 59 RVRNRCEISGRSRG-VYRD 76 (101) Q Consensus 59 Ri~NRC~~TGR~Rg-v~r~ 76 (101) |==.--++|||++| .|++ T Consensus 131 RGD~i~F~TGRt~gsmykk 149 (248) T TIGR01672 131 RGDKIFFVTGRTAGSMYKK 149 (248) T ss_pred HCCEEEEEECCCCCCCCCC T ss_conf 0987999846876443325 No 21 >PRK05797 consensus Probab=20.80 E-value=30 Score=16.28 Aligned_cols=53 Identities=19% Similarity=0.193 Sum_probs=40.5 Q ss_pred HHHHCCHHHHHHHHCCCCCCCCCCCHHHHHHCHHHHHHHHHHHCCCCCCCCCC Q ss_conf 97208604432444022143566411440425629999999965899983214 Q gi|254780248|r 47 QLGSLPRDGSRVRVRNRCEISGRSRGVYRDFRLSRLALRELGGVGKIPGIIKS 99 (101) Q Consensus 47 kL~~Lprnss~tRi~NRC~~TGR~Rgv~r~f~lSRi~fRela~~G~ipGv~Ka 99 (101) .||++|..+-.-|--.+|++.+-...++=-+--|-|-+|=|||...-|++..| T Consensus 615 NLQNIP~r~e~G~~iR~aFi~~~~~~~l~saDYSQIELRilAh~s~d~~l~~a 667 (869) T PRK05797 615 NLQNIPIKYEMGREIRKVFIPNTEDSVILSADYSQIELRVLAHISGDENLIDA 667 (869) T ss_pred CCCCCCCCCCCHHHHHHEEECCCCCCEEEECCHHHHHHHHHHHHHCCHHHHHH T ss_conf 64568776520122553571477761588522778999999998468999998 No 22 >PRK05415 hypothetical protein; Provisional Probab=20.55 E-value=65 Score=14.24 Aligned_cols=26 Identities=27% Similarity=0.295 Sum_probs=22.5 Q ss_pred CCCCCCHHHHHHCHHHHHHHHHHHCCC Q ss_conf 356641144042562999999996589 Q gi|254780248|r 66 ISGRSRGVYRDFRLSRLALRELGGVGK 92 (101) Q Consensus 66 ~TGR~Rgv~r~f~lSRi~fRela~~G~ 92 (101) ..||+ ||+..++|-|.+|-.||-.|- T Consensus 231 YG~r~-G~~gr~rL~R~Vl~~la~aGa 256 (338) T PRK05415 231 YGIEL-GYLSRIRLFRLVLANIAFAGA 256 (338) T ss_pred HCCCC-HHHHHHHHHHHHHHHHHHHHH T ss_conf 68780-187999999999999999729 Done!