Query gi|254780248|ref|YP_003064661.1| 30S ribosomal protein S14 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 101 No_of_seqs 107 out of 1176 Neff 5.4 Searched_HMMs 33803 Date Tue May 24 04:57:16 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780248.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >3bbn_N Ribosomal protein S14; 100.0 5.4E-40 1.5E-44 263.8 -6.2 100 1-101 1-100 (100) 2 >3i1m_N 30S ribosomal protein 99.9 5E-26 1.5E-30 178.8 1.7 56 46-101 1-56 (56) 3 >2vqe_N 30S ribosomal protein 99.9 1.3E-25 3.8E-30 176.3 0.7 59 41-101 3-61 (61) 4 >2zkq_n 40S ribosomal protein 93.1 0.029 8.5E-07 34.3 0.8 31 60-90 17-49 (56) 5 >3jyv_N 40S ribosomal protein 92.7 0.037 1.1E-06 33.6 0.9 30 61-90 14-45 (50) 6 >1y6u_A XIS, excisionase from 57.6 5.9 0.00017 20.2 1.9 22 75-96 24-45 (70) 7 >3fhg_A Mjogg, N-glycosylase/D 44.5 16 0.00047 17.6 2.4 23 79-101 3-25 (65) 8 >1z4h_A TORI, TOR inhibition p 32.1 15 0.00045 17.7 0.7 27 71-97 14-41 (66) 9 >2okt_A OSB synthetase, O-succ 32.1 26 0.00078 16.3 1.9 25 72-96 6-30 (77) 10 >2vbc_A Dengue 4 NS3 FULL-leng 27.0 40 0.0012 15.1 2.1 55 40-94 154-210 (229) 11 >2z83_A Helicase/nucleoside tr 25.9 40 0.0012 15.1 2.0 55 40-94 165-221 (240) 12 >2v6i_A RNA helicase; membrane 24.9 43 0.0013 15.0 2.0 55 40-94 146-202 (225) 13 >1yks_A Genome polyprotein [co 24.8 43 0.0013 14.9 2.0 56 39-94 150-207 (230) 14 >2wv9_A Flavivirin protease NS 24.7 44 0.0013 14.9 2.0 56 39-94 151-208 (243) 15 >2jlq_A Serine protease subuni 24.6 44 0.0013 14.9 2.0 55 40-94 162-218 (237) 16 >3ces_A MNMG, tRNA uridine 5-c 22.8 21 0.00061 16.9 0.0 24 77-100 130-153 (171) 17 >1eh9_A Glycosyltrehalose treh 20.0 31 0.00092 15.8 0.4 26 63-88 7-32 (55) No 1 >>3bbn_N Ribosomal protein S14; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} (N:) Probab=100.00 E-value=5.4e-40 Score=263.79 Aligned_cols=100 Identities=32% Similarity=0.504 Sum_probs=97.6 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCHHHHHHCHH Q ss_conf 91268999999999999999999999999834879898999999999720860443244402214356641144042562 Q gi|254780248|r 1 MAKVSAVERNKRRLRVVAKQASKRLALKKIVMDKSVTLEERFDAMLQLGSLPRDGSRVRVRNRCEISGRSRGVYRDFRLS 80 (101) Q Consensus 1 Makks~i~rd~kRr~l~~k~~~kR~~lk~~~~~~~l~~~~r~~a~~kL~~Lprnss~tRi~NRC~~TGR~Rgv~r~f~lS 80 (101) |||||+|+||.+|++++++||.+|..||++++|+++| +++++++.+|++||+||||||++|||++||||||||++|||| T Consensus 1 Makks~i~rd~krR~l~~k~e~~R~~lK~~~kn~~~p-~~r~~~~~~l~~lpr~ss~~ri~nRC~~tGR~rgv~r~f~ls 79 (100) T 3bbn_N 1 MARKSLIQREKKRRNLEQKYHLIRRSSKQEIRKVTSL-SDKWEIHGKLQSPPRNSAPARLHRRCFLTGRPRANIRDFGLS 79 (100) T ss_dssp -CCTTHHHHHHTTTSSTTTTSSSTTTTTTTTSSCCSS-SCCCSHHHHSCCSCSSCCGGGCCCCCSSSCCSSSBCTTTCSB T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCEEECCCCCH T ss_conf 9568899999999999999999999999988056886-689999999986433668278864864589966420122636 Q ss_pred HHHHHHHHHCCCCCCCCCCCC Q ss_conf 999999996589998321469 Q gi|254780248|r 81 RLALRELGGVGKIPGIIKSSW 101 (101) Q Consensus 81 Ri~fRela~~G~ipGv~KaSW 101 (101) ||+|||||+.|+||||+|||| T Consensus 80 Ri~fR~la~~G~lpGv~KaSW 100 (100) T 3bbn_N 80 GHILREMVHTCLLPGATRSSW 100 (100) T ss_dssp TTHHHHHHTTTCSSSCEECCC T ss_pred HHHHHHHHHCCCCCCEECCCC T ss_conf 999999998697988522779 No 2 >>3i1m_N 30S ribosomal protein S14; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_N* 3e1a_G 3e1c_G 1vs5_N 3i1o_N 3i1q_N 3i1s_N 3i1z_N 3i21_N 2qal_N* 1p6g_N 1p87_N 2aw7_N 2avy_N 2i2u_N 2i2p_N* 2qan_N* 2qb9_N* 2qbb_N* 2qbd_N ... (N:46-101) Probab=99.91 E-value=5e-26 Score=178.80 Aligned_cols=56 Identities=52% Similarity=0.918 Sum_probs=54.9 Q ss_pred HHHHHCCHHHHHHHHCCCCCCCCCCCHHHHHHCHHHHHHHHHHHCCCCCCCCCCCC Q ss_conf 99720860443244402214356641144042562999999996589998321469 Q gi|254780248|r 46 LQLGSLPRDGSRVRVRNRCEISGRSRGVYRDFRLSRLALRELGGVGKIPGIIKSSW 101 (101) Q Consensus 46 ~kL~~Lprnss~tRi~NRC~~TGR~Rgv~r~f~lSRi~fRela~~G~ipGv~KaSW 101 (101) ++|++||+||||||++|||++||||||||++||||||+|||||+.|+||||+|||| T Consensus 1 lkl~~lpr~ss~tri~nRC~~tGR~Rg~~r~f~lsR~~fR~la~~G~lpGv~KasW 56 (56) T 3i1m_N 1 LKLQTLPRDSSPSRQRNRCRQTGRPHGFLRKFGLSRIKVREAAMRGEIPGLKKASW 56 (56) T ss_dssp TTSCCSCSSCSGGGCCCCCSSSCCCSSEETTTTEEHHHHHHHHTTSCSTTEEECCC T ss_pred HHHHCCCCCHHHHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHCCCCCCEECCCC T ss_conf 99861784105789987875159865332133532999999997697988412679 No 3 >>2vqe_N 30S ribosomal protein S14 type Z; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} (N:) Probab=99.90 E-value=1.3e-25 Score=176.29 Aligned_cols=59 Identities=42% Similarity=0.724 Sum_probs=57.0 Q ss_pred HHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCHHHHHHCHHHHHHHHHHHCCCCCCCCCCCC Q ss_conf 9999999720860443244402214356641144042562999999996589998321469 Q gi|254780248|r 41 RFDAMLQLGSLPRDGSRVRVRNRCEISGRSRGVYRDFRLSRLALRELGGVGKIPGIIKSSW 101 (101) Q Consensus 41 r~~a~~kL~~Lprnss~tRi~NRC~~TGR~Rgv~r~f~lSRi~fRela~~G~ipGv~KaSW 101 (101) +++++.+|++||+|+ ||++|||++||||||||++||||||+|||+|+.|+||||+|||| T Consensus 3 R~~~~~kl~~lpr~~--tRi~nRC~~tGR~Rg~~r~f~lsRi~fR~~a~~G~lpGv~KaSW 61 (61) T 2vqe_N 3 RKALIEKAKRTPKFK--VRAYTRCVRCGRARSVYRFFGLCRICLRELAHKGQLPGVRKASW 61 (61) T ss_dssp CGGGGGGCCSCCSSG--GGCCCCCTTTCCCTTCCTTTSSCHHHHHHHHHHTCSSSCEECCC T ss_pred HHHHHHHHHCCCCCC--CCCEEECCCCCCCCEEECCCCCHHHHHHHHHHCCCCCCEECCCC T ss_conf 799999987189987--63301036789976530345607999999997597888661679 No 4 >>2zkq_n 40S ribosomal protein S29E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} PDB: 1s1h_N (n:) Probab=93.06 E-value=0.029 Score=34.27 Aligned_cols=31 Identities=16% Similarity=0.444 Sum_probs=26.9 Q ss_pred HCCCCCCCCCCCHHHHHHC--HHHHHHHHHHHC Q ss_conf 4022143566411440425--629999999965 Q gi|254780248|r 60 VRNRCEISGRSRGVYRDFR--LSRLALRELGGV 90 (101) Q Consensus 60 i~NRC~~TGR~Rgv~r~f~--lSRi~fRela~~ 90 (101) =-+.|.++|+..|++|+|| |||-+|||.|.. T Consensus 17 gsr~Cr~Cg~~~glIrKYgl~lCRqCFRE~A~~ 49 (56) T 2zkq_n 17 GSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKD 49 (56) T ss_dssp CCCCCSSSCCSTTCCTTTCCCSCHHHHHHTTTT T ss_pred CCEEEEECCCCCCEEEECCCHHHHHHHHHHHHH T ss_conf 860678769976378870742178899987785 No 5 >>3jyv_N 40S ribosomal protein S29(A); eukaryotic ribosome, RACK1 protein, flexible fitting; HET: 2MG H2U M2G OMC OMG YYG PSU 5MC 7MG 5MU 1MA; 8.90A {Thermomyces lanuginosus} (N:) Probab=92.67 E-value=0.037 Score=33.60 Aligned_cols=30 Identities=20% Similarity=0.517 Sum_probs=26.6 Q ss_pred CCCCCCCCCCCHHHHHHC--HHHHHHHHHHHC Q ss_conf 022143566411440425--629999999965 Q gi|254780248|r 61 RNRCEISGRSRGVYRDFR--LSRLALRELGGV 90 (101) Q Consensus 61 ~NRC~~TGR~Rgv~r~f~--lSRi~fRela~~ 90 (101) -+.|.++|+..|++|+|| |||-+|||.|.. T Consensus 14 sr~Cr~Cg~~~glIrKYgl~~CRqCFre~A~d 45 (50) T 3jyv_N 14 SRQCRVCSSHTGLVRKYDLNICRQCFREKAND 45 (50) T ss_dssp CCCCSSSCCCSSCCSSCSCSSSSHHHHHHHHH T ss_pred CCEEEECCCCCCEEEECCCHHHHHHHHHHHHH T ss_conf 88237579986577873842178899987886 No 6 >>1y6u_A XIS, excisionase from transposon TN916; structure, DNA architectural protein, tyrosine recombinase, winged-helix protein; NMR {Enterococcus faecalis} (A:) Probab=57.55 E-value=5.9 Score=20.20 Aligned_cols=22 Identities=27% Similarity=0.341 Sum_probs=19.6 Q ss_pred HHHCHHHHHHHHHHHCCCCCCC Q ss_conf 0425629999999965899983 Q gi|254780248|r 75 RDFRLSRLALRELGGVGKIPGI 96 (101) Q Consensus 75 r~f~lSRi~fRela~~G~ipGv 96 (101) -.+|+|+-.+++|++.|.+|+. T Consensus 24 ~ylgis~~~ly~l~~~~~ip~~ 45 (70) T 1y6u_A 24 KYFRIGENKLRRLAEENKNANW 45 (70) T ss_dssp HHTCSCHHHHHHHHHHCTTCSS T ss_pred HHHCCCHHHHHHHHHHCCCCCC T ss_conf 9955049999999985889980 No 7 >>3fhg_A Mjogg, N-glycosylase/DNA lyase, DNA-; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, ssogg, DNA damage, DNA repair, glycosidase, hydrolase; 1.90A {Sulfolobus solfataricus} (A:143-207) Probab=44.49 E-value=16 Score=17.60 Aligned_cols=23 Identities=13% Similarity=0.148 Sum_probs=17.2 Q ss_pred HHHHHHHHHHHCCCCCCCCCCCC Q ss_conf 62999999996589998321469 Q gi|254780248|r 79 LSRLALRELGGVGKIPGIIKSSW 101 (101) Q Consensus 79 lSRi~fRela~~G~ipGv~KaSW 101 (101) |-||.+|-|...|.+++..-.+| T Consensus 3 LDrHILr~l~~~g~i~e~~pk~~ 25 (65) T 3fhg_A 3 IDRHIIDFMRRIGAIGETNVKQL 25 (65) T ss_dssp CCHHHHHHHHHTTSSCCCCCSCC T ss_pred HHHHHHHHHHHCCCCCCCCCCCC T ss_conf 68899999999088689997731 No 8 >>1z4h_A TORI, TOR inhibition protein; winged helix, reverse turn, protein binding, DNA binding protein; NMR {Escherichia coli} (A:) Probab=32.07 E-value=15 Score=17.68 Aligned_cols=27 Identities=11% Similarity=0.188 Sum_probs=21.9 Q ss_pred CHHHHHHCHHHHHHHHHHHCCCCCC-CC Q ss_conf 1144042562999999996589998-32 Q gi|254780248|r 71 RGVYRDFRLSRLALRELGGVGKIPG-II 97 (101) Q Consensus 71 Rgv~r~f~lSRi~fRela~~G~ipG-v~ 97 (101) .-|-..+|+|+-.|.+++..|.+|= ++ T Consensus 14 ~eva~~lgis~~ti~~~~~~G~~P~~~k 41 (66) T 1z4h_A 14 KFIMADTGFGKTFIYDRIKSGDLPKAKV 41 (66) T ss_dssp HHHHHHHSSCHHHHHHHHHHHHCCCSEE T ss_pred HHHHHHHCCCHHHHHHHHHCCCCCCCEE T ss_conf 9999997978999866731896148885 No 9 >>2okt_A OSB synthetase, O-succinylbenzoic acid synthetase; enolase, structural genomics, protein structure initiative, PSI, nysgrc; 1.30A {Staphylococcus aureus subsp} PDB: 2ola_A 3h70_A (A:114-122,A:275-342) Probab=32.06 E-value=26 Score=16.25 Aligned_cols=25 Identities=32% Similarity=0.400 Sum_probs=21.0 Q ss_pred HHHHHHCHHHHHHHHHHHCCCCCCC Q ss_conf 1440425629999999965899983 Q gi|254780248|r 72 GVYRDFRLSRLALRELGGVGKIPGI 96 (101) Q Consensus 72 gv~r~f~lSRi~fRela~~G~ipGv 96 (101) +|--.|||||..---||..|.-||= T Consensus 6 ~~~~EyGLSRYFTAmLa~~gdYPgD 30 (77) T 2okt_A 6 SVAYEYGLSRYFTAMLARKGDYPGD 30 (77) T ss_dssp EEECCCHHHHHHHHHHHTTSSSCCB T ss_pred CCCCCHHHHHHHHHHHHCCCCCCCC T ss_conf 1001259999999999678787877 No 10 >>2vbc_A Dengue 4 NS3 FULL-length protein; transmembrane, RNA replication, NS2B-NS3 protease; 3.15A {Dengue virus type 4} (A:176-323,A:482-562) Probab=27.04 E-value=40 Score=15.13 Aligned_cols=55 Identities=18% Similarity=0.111 Sum_probs=36.7 Q ss_pred HHHHHHHHHHHCCH--HHHHHHHCCCCCCCCCCCHHHHHHCHHHHHHHHHHHCCCCC Q ss_conf 99999999720860--44324440221435664114404256299999999658999 Q gi|254780248|r 40 ERFDAMLQLGSLPR--DGSRVRVRNRCEISGRSRGVYRDFRLSRLALRELGGVGKIP 94 (101) Q Consensus 40 ~r~~a~~kL~~Lpr--nss~tRi~NRC~~TGR~Rgv~r~f~lSRi~fRela~~G~ip 94 (101) .=-+|++-|+++-- ---++-.-.-=-.+--+-|.||.=+-.|-.|++|...|.+| T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (229) T 2vbc_A 154 HWTEAKMLLDNIYTPEGIIPTLFGPEREKTQAIDGEFRLRGEQRKTFVELMRRGDLP 210 (229) T ss_dssp HHHHHHHHHTTSCCTTCCCCCCCGGGGGGCCSCTTTTCCCTTHHHHHHHHHHTSCCC T ss_pred CHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCCCCCCEEECHHHHHHHHHHHHHCCCC T ss_conf 525877655321153566532345056630357873550314578899987625552 No 11 >>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A (A:1-159,A:317-397) Probab=25.87 E-value=40 Score=15.11 Aligned_cols=55 Identities=16% Similarity=0.053 Sum_probs=36.6 Q ss_pred HHHHHHHHHHHCCH--HHHHHHHCCCCCCCCCCCHHHHHHCHHHHHHHHHHHCCCCC Q ss_conf 99999999720860--44324440221435664114404256299999999658999 Q gi|254780248|r 40 ERFDAMLQLGSLPR--DGSRVRVRNRCEISGRSRGVYRDFRLSRLALRELGGVGKIP 94 (101) Q Consensus 40 ~r~~a~~kL~~Lpr--nss~tRi~NRC~~TGR~Rgv~r~f~lSRi~fRela~~G~ip 94 (101) .=-+|++-|+++-- ---++-.-.---.+--+-|.||.=+-.|-.|+++...|.+| T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (240) T 2z83_A 165 HWTEAKIMLDNIHMPNGLVAQLYGPEREKAFTMDGEYRLRGEEKKNFLELLRTADLP 221 (240) T ss_dssp HHHHHHHHHHTSCCTTSCCCCCCGGGGGGCCCCTTTTCCCHHHHHHHHHHHHTSCCC T ss_pred CCCHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCC T ss_conf 004277787536562333200037577736698602331021467899998635898 No 12 >>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A (A:1-140,A:295-379) Probab=24.88 E-value=43 Score=14.95 Aligned_cols=55 Identities=16% Similarity=0.115 Sum_probs=36.5 Q ss_pred HHHHHHHHHHHCCH--HHHHHHHCCCCCCCCCCCHHHHHHCHHHHHHHHHHHCCCCC Q ss_conf 99999999720860--44324440221435664114404256299999999658999 Q gi|254780248|r 40 ERFDAMLQLGSLPR--DGSRVRVRNRCEISGRSRGVYRDFRLSRLALRELGGVGKIP 94 (101) Q Consensus 40 ~r~~a~~kL~~Lpr--nss~tRi~NRC~~TGR~Rgv~r~f~lSRi~fRela~~G~ip 94 (101) .=-+|++-|+++-- ---++-.-.-=-.+--+-|.||.=+-.|-.|+++...|.+| T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (225) T 2v6i_A 146 SWTEARMLLDNVHVQGGVVAQLYTPEREKTEAYEGEFKLKTNQRKVFSELIRTGDLP 202 (225) T ss_dssp HHHHHHHHHTTCCCTTSCCCCCCGGGGGGCCCCTTTTCCCHHHHHHHHHHHHTTCCC T ss_pred CHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCEEECCHHHHHHHHHHHHHCCCC T ss_conf 037889888766400243211257367501379966874688899999987645884 No 13 >>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} (A:1-145,A:303-387) Probab=24.79 E-value=43 Score=14.94 Aligned_cols=56 Identities=20% Similarity=0.092 Sum_probs=36.7 Q ss_pred HHHHHHHHHHHHCCHHHHH--HHHCCCCCCCCCCCHHHHHHCHHHHHHHHHHHCCCCC Q ss_conf 9999999997208604432--4440221435664114404256299999999658999 Q gi|254780248|r 39 EERFDAMLQLGSLPRDGSR--VRVRNRCEISGRSRGVYRDFRLSRLALRELGGVGKIP 94 (101) Q Consensus 39 ~~r~~a~~kL~~Lprnss~--tRi~NRC~~TGR~Rgv~r~f~lSRi~fRela~~G~ip 94 (101) ..=-+|++-|+++---..+ +-.-.-=-.+--+-|.||.=+-.|-.|+++...|.+| T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (230) T 1yks_A 150 VCWLEASMLLDNMEVRGGMVAPLYGVEGTKTPVSPGEMRLRDDQRKVFRELVRNCDLP 207 (230) T ss_dssp HHHHHHHHHHTTSCCGGGCCCCCSTTHHHHSSSCTTTTCCCHHHHHHHHHHHHTTCCC T ss_pred CCHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCC T ss_conf 3334699998752145776643334255513478854220255788999998754675 No 14 >>2wv9_A Flavivirin protease NS2B regulatory subunit, flavivirin protease NS3 catalytic subunit...; NS2B-NS3 protease; 2.75A {Murray valley encephalitis virus} (A:232-377,A:537-633) Probab=24.67 E-value=44 Score=14.89 Aligned_cols=56 Identities=16% Similarity=0.080 Sum_probs=37.1 Q ss_pred HHHHHHHHHHHHCC--HHHHHHHHCCCCCCCCCCCHHHHHHCHHHHHHHHHHHCCCCC Q ss_conf 99999999972086--044324440221435664114404256299999999658999 Q gi|254780248|r 39 EERFDAMLQLGSLP--RDGSRVRVRNRCEISGRSRGVYRDFRLSRLALRELGGVGKIP 94 (101) Q Consensus 39 ~~r~~a~~kL~~Lp--rnss~tRi~NRC~~TGR~Rgv~r~f~lSRi~fRela~~G~ip 94 (101) ..=-+|++-|+++- .---++-.-.-=..+--+-|.||.=+-.|-.||+|...|.+| T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (243) T 2wv9_A 151 AHWTEAKILLDNIHLPNGLVAQLYGPERDKTYTMDGEYRLRGEERKTFLELIKTADLP 208 (243) T ss_dssp HHHHHHHHHHHTSCBTTTBCCCCCGGGGGGCCCCTTTTCCCHHHHHHHHHHHHTSCCC T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCHHHCCCCCCCEECCCCCCCCHHHHHHHCCCC T ss_conf 6364799999846998877676678972323467860110224532455521342587 No 15 >>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase, transferase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A (A:1-156,A:315-395) Probab=24.60 E-value=44 Score=14.87 Aligned_cols=55 Identities=18% Similarity=0.111 Sum_probs=36.5 Q ss_pred HHHHHHHHHHHCCH--HHHHHHHCCCCCCCCCCCHHHHHHCHHHHHHHHHHHCCCCC Q ss_conf 99999999720860--44324440221435664114404256299999999658999 Q gi|254780248|r 40 ERFDAMLQLGSLPR--DGSRVRVRNRCEISGRSRGVYRDFRLSRLALRELGGVGKIP 94 (101) Q Consensus 40 ~r~~a~~kL~~Lpr--nss~tRi~NRC~~TGR~Rgv~r~f~lSRi~fRela~~G~ip 94 (101) .=-+|++-|+++-- ---++-.-.---.+--+-|.||.=+-.|-.|+++...|.+| T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (237) T 2jlq_A 162 HWTEAKMLLDNIYTPEGIIPTLFGPEREKTQAIDGEFRLRGEQRKTFVELMRRGDLP 218 (237) T ss_dssp HHHHHHHHHTTCCCTTCCCCCCCGGGGGGCCCCTTTTCCCHHHHHHHHHHHHTSCCC T ss_pred HHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCCCCEECCHHHHHHHHHHHHHCCCC T ss_conf 589999999876412575321313666324468971561577788999987635663 No 16 >>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A (A:481-651) Probab=22.83 E-value=21 Score=16.89 Aligned_cols=24 Identities=17% Similarity=0.372 Sum_probs=19.1 Q ss_pred HCHHHHHHHHHHHCCCCCCCCCCC Q ss_conf 256299999999658999832146 Q gi|254780248|r 77 FRLSRLALRELGGVGKIPGIIKSS 100 (101) Q Consensus 77 f~lSRi~fRela~~G~ipGv~KaS 100 (101) =+|+++.-.-++...-||||+-|. T Consensus 130 eKL~~~rP~TlgqAsRI~GVTPa~ 153 (171) T 3ces_A 130 AKLNDHKPASIGQASRISGVTPAA 153 (171) T ss_dssp ------------------------ T ss_pred HHHHHCCCCCHHHHHCCCCCCHHH T ss_conf 999756999988886789989999 No 17 >>1eh9_A Glycosyltrehalose trehalohydrolase; alpha/beta barrel, calcium binding, covalent dimer,; 3.00A {Sulfolobus solfataricus} (A:309-363) Probab=20.05 E-value=31 Score=15.80 Aligned_cols=26 Identities=19% Similarity=0.363 Sum_probs=19.4 Q ss_pred CCCCCCCCCHHHHHHCHHHHHHHHHH Q ss_conf 21435664114404256299999999 Q gi|254780248|r 63 RCEISGRSRGVYRDFRLSRLALRELG 88 (101) Q Consensus 63 RC~~TGR~Rgv~r~f~lSRi~fRela 88 (101) +..+||..-|+|.+|+--...-+-+. T Consensus 7 hv~lTGE~~gYY~Dfg~~~~la~al~ 32 (55) T 1eh9_A 7 HAYLTGERQGYYTDFGNLDDIVKSYK 32 (55) T ss_dssp HHHHSCCCSGGGGGCCSHHHHHHHHH T ss_pred HHHHCCCCCCCHHCCCCHHHHHHHHH T ss_conf 99854543220001100688998765 Done!