Query         gi|254780248|ref|YP_003064661.1| 30S ribosomal protein S14 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 101
No_of_seqs    107 out of 1176
Neff          5.4 
Searched_HMMs 33803
Date          Tue May 24 04:57:16 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780248.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >3bbn_N Ribosomal protein S14; 100.0 5.4E-40 1.5E-44  263.8  -6.2  100    1-101     1-100 (100)
  2 >3i1m_N 30S ribosomal protein   99.9   5E-26 1.5E-30  178.8   1.7   56   46-101     1-56  (56)
  3 >2vqe_N 30S ribosomal protein   99.9 1.3E-25 3.8E-30  176.3   0.7   59   41-101     3-61  (61)
  4 >2zkq_n 40S ribosomal protein   93.1   0.029 8.5E-07   34.3   0.8   31   60-90     17-49  (56)
  5 >3jyv_N 40S ribosomal protein   92.7   0.037 1.1E-06   33.6   0.9   30   61-90     14-45  (50)
  6 >1y6u_A XIS, excisionase from   57.6     5.9 0.00017   20.2   1.9   22   75-96     24-45  (70)
  7 >3fhg_A Mjogg, N-glycosylase/D  44.5      16 0.00047   17.6   2.4   23   79-101     3-25  (65)
  8 >1z4h_A TORI, TOR inhibition p  32.1      15 0.00045   17.7   0.7   27   71-97     14-41  (66)
  9 >2okt_A OSB synthetase, O-succ  32.1      26 0.00078   16.3   1.9   25   72-96      6-30  (77)
 10 >2vbc_A Dengue 4 NS3 FULL-leng  27.0      40  0.0012   15.1   2.1   55   40-94    154-210 (229)
 11 >2z83_A Helicase/nucleoside tr  25.9      40  0.0012   15.1   2.0   55   40-94    165-221 (240)
 12 >2v6i_A RNA helicase; membrane  24.9      43  0.0013   15.0   2.0   55   40-94    146-202 (225)
 13 >1yks_A Genome polyprotein [co  24.8      43  0.0013   14.9   2.0   56   39-94    150-207 (230)
 14 >2wv9_A Flavivirin protease NS  24.7      44  0.0013   14.9   2.0   56   39-94    151-208 (243)
 15 >2jlq_A Serine protease subuni  24.6      44  0.0013   14.9   2.0   55   40-94    162-218 (237)
 16 >3ces_A MNMG, tRNA uridine 5-c  22.8      21 0.00061   16.9   0.0   24   77-100   130-153 (171)
 17 >1eh9_A Glycosyltrehalose treh  20.0      31 0.00092   15.8   0.4   26   63-88      7-32  (55)

No 1  
>>3bbn_N Ribosomal protein S14; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} (N:)
Probab=100.00  E-value=5.4e-40  Score=263.79  Aligned_cols=100  Identities=32%  Similarity=0.504  Sum_probs=97.6

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCHHHHHHCHH
Q ss_conf             91268999999999999999999999999834879898999999999720860443244402214356641144042562
Q gi|254780248|r    1 MAKVSAVERNKRRLRVVAKQASKRLALKKIVMDKSVTLEERFDAMLQLGSLPRDGSRVRVRNRCEISGRSRGVYRDFRLS   80 (101)
Q Consensus         1 Makks~i~rd~kRr~l~~k~~~kR~~lk~~~~~~~l~~~~r~~a~~kL~~Lprnss~tRi~NRC~~TGR~Rgv~r~f~lS   80 (101)
                      |||||+|+||.+|++++++||.+|..||++++|+++| +++++++.+|++||+||||||++|||++||||||||++||||
T Consensus         1 Makks~i~rd~krR~l~~k~e~~R~~lK~~~kn~~~p-~~r~~~~~~l~~lpr~ss~~ri~nRC~~tGR~rgv~r~f~ls   79 (100)
T 3bbn_N            1 MARKSLIQREKKRRNLEQKYHLIRRSSKQEIRKVTSL-SDKWEIHGKLQSPPRNSAPARLHRRCFLTGRPRANIRDFGLS   79 (100)
T ss_dssp             -CCTTHHHHHHTTTSSTTTTSSSTTTTTTTTSSCCSS-SCCCSHHHHSCCSCSSCCGGGCCCCCSSSCCSSSBCTTTCSB
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCEEECCCCCH
T ss_conf             9568899999999999999999999999988056886-689999999986433668278864864589966420122636


Q ss_pred             HHHHHHHHHCCCCCCCCCCCC
Q ss_conf             999999996589998321469
Q gi|254780248|r   81 RLALRELGGVGKIPGIIKSSW  101 (101)
Q Consensus        81 Ri~fRela~~G~ipGv~KaSW  101 (101)
                      ||+|||||+.|+||||+||||
T Consensus        80 Ri~fR~la~~G~lpGv~KaSW  100 (100)
T 3bbn_N           80 GHILREMVHTCLLPGATRSSW  100 (100)
T ss_dssp             TTHHHHHHTTTCSSSCEECCC
T ss_pred             HHHHHHHHHCCCCCCEECCCC
T ss_conf             999999998697988522779


No 2  
>>3i1m_N 30S ribosomal protein S14; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_N* 3e1a_G 3e1c_G 1vs5_N 3i1o_N 3i1q_N 3i1s_N 3i1z_N 3i21_N 2qal_N* 1p6g_N 1p87_N 2aw7_N 2avy_N 2i2u_N 2i2p_N* 2qan_N* 2qb9_N* 2qbb_N* 2qbd_N ... (N:46-101)
Probab=99.91  E-value=5e-26  Score=178.80  Aligned_cols=56  Identities=52%  Similarity=0.918  Sum_probs=54.9

Q ss_pred             HHHHHCCHHHHHHHHCCCCCCCCCCCHHHHHHCHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf             99720860443244402214356641144042562999999996589998321469
Q gi|254780248|r   46 LQLGSLPRDGSRVRVRNRCEISGRSRGVYRDFRLSRLALRELGGVGKIPGIIKSSW  101 (101)
Q Consensus        46 ~kL~~Lprnss~tRi~NRC~~TGR~Rgv~r~f~lSRi~fRela~~G~ipGv~KaSW  101 (101)
                      ++|++||+||||||++|||++||||||||++||||||+|||||+.|+||||+||||
T Consensus         1 lkl~~lpr~ss~tri~nRC~~tGR~Rg~~r~f~lsR~~fR~la~~G~lpGv~KasW   56 (56)
T 3i1m_N            1 LKLQTLPRDSSPSRQRNRCRQTGRPHGFLRKFGLSRIKVREAAMRGEIPGLKKASW   56 (56)
T ss_dssp             TTSCCSCSSCSGGGCCCCCSSSCCCSSEETTTTEEHHHHHHHHTTSCSTTEEECCC
T ss_pred             HHHHCCCCCHHHHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHCCCCCCEECCCC
T ss_conf             99861784105789987875159865332133532999999997697988412679


No 3  
>>2vqe_N 30S ribosomal protein S14 type Z; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} (N:)
Probab=99.90  E-value=1.3e-25  Score=176.29  Aligned_cols=59  Identities=42%  Similarity=0.724  Sum_probs=57.0

Q ss_pred             HHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCHHHHHHCHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf             9999999720860443244402214356641144042562999999996589998321469
Q gi|254780248|r   41 RFDAMLQLGSLPRDGSRVRVRNRCEISGRSRGVYRDFRLSRLALRELGGVGKIPGIIKSSW  101 (101)
Q Consensus        41 r~~a~~kL~~Lprnss~tRi~NRC~~TGR~Rgv~r~f~lSRi~fRela~~G~ipGv~KaSW  101 (101)
                      +++++.+|++||+|+  ||++|||++||||||||++||||||+|||+|+.|+||||+||||
T Consensus         3 R~~~~~kl~~lpr~~--tRi~nRC~~tGR~Rg~~r~f~lsRi~fR~~a~~G~lpGv~KaSW   61 (61)
T 2vqe_N            3 RKALIEKAKRTPKFK--VRAYTRCVRCGRARSVYRFFGLCRICLRELAHKGQLPGVRKASW   61 (61)
T ss_dssp             CGGGGGGCCSCCSSG--GGCCCCCTTTCCCTTCCTTTSSCHHHHHHHHHHTCSSSCEECCC
T ss_pred             HHHHHHHHHCCCCCC--CCCEEECCCCCCCCEEECCCCCHHHHHHHHHHCCCCCCEECCCC
T ss_conf             799999987189987--63301036789976530345607999999997597888661679


No 4  
>>2zkq_n 40S ribosomal protein S29E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} PDB: 1s1h_N (n:)
Probab=93.06  E-value=0.029  Score=34.27  Aligned_cols=31  Identities=16%  Similarity=0.444  Sum_probs=26.9

Q ss_pred             HCCCCCCCCCCCHHHHHHC--HHHHHHHHHHHC
Q ss_conf             4022143566411440425--629999999965
Q gi|254780248|r   60 VRNRCEISGRSRGVYRDFR--LSRLALRELGGV   90 (101)
Q Consensus        60 i~NRC~~TGR~Rgv~r~f~--lSRi~fRela~~   90 (101)
                      =-+.|.++|+..|++|+||  |||-+|||.|..
T Consensus        17 gsr~Cr~Cg~~~glIrKYgl~lCRqCFRE~A~~   49 (56)
T 2zkq_n           17 GSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKD   49 (56)
T ss_dssp             CCCCCSSSCCSTTCCTTTCCCSCHHHHHHTTTT
T ss_pred             CCEEEEECCCCCCEEEECCCHHHHHHHHHHHHH
T ss_conf             860678769976378870742178899987785


No 5  
>>3jyv_N 40S ribosomal protein S29(A); eukaryotic ribosome, RACK1 protein, flexible fitting; HET: 2MG H2U M2G OMC OMG YYG PSU 5MC 7MG 5MU 1MA; 8.90A {Thermomyces lanuginosus} (N:)
Probab=92.67  E-value=0.037  Score=33.60  Aligned_cols=30  Identities=20%  Similarity=0.517  Sum_probs=26.6

Q ss_pred             CCCCCCCCCCCHHHHHHC--HHHHHHHHHHHC
Q ss_conf             022143566411440425--629999999965
Q gi|254780248|r   61 RNRCEISGRSRGVYRDFR--LSRLALRELGGV   90 (101)
Q Consensus        61 ~NRC~~TGR~Rgv~r~f~--lSRi~fRela~~   90 (101)
                      -+.|.++|+..|++|+||  |||-+|||.|..
T Consensus        14 sr~Cr~Cg~~~glIrKYgl~~CRqCFre~A~d   45 (50)
T 3jyv_N           14 SRQCRVCSSHTGLVRKYDLNICRQCFREKAND   45 (50)
T ss_dssp             CCCCSSSCCCSSCCSSCSCSSSSHHHHHHHHH
T ss_pred             CCEEEECCCCCCEEEECCCHHHHHHHHHHHHH
T ss_conf             88237579986577873842178899987886


No 6  
>>1y6u_A XIS, excisionase from transposon TN916; structure, DNA architectural protein, tyrosine recombinase, winged-helix protein; NMR {Enterococcus faecalis} (A:)
Probab=57.55  E-value=5.9  Score=20.20  Aligned_cols=22  Identities=27%  Similarity=0.341  Sum_probs=19.6

Q ss_pred             HHHCHHHHHHHHHHHCCCCCCC
Q ss_conf             0425629999999965899983
Q gi|254780248|r   75 RDFRLSRLALRELGGVGKIPGI   96 (101)
Q Consensus        75 r~f~lSRi~fRela~~G~ipGv   96 (101)
                      -.+|+|+-.+++|++.|.+|+.
T Consensus        24 ~ylgis~~~ly~l~~~~~ip~~   45 (70)
T 1y6u_A           24 KYFRIGENKLRRLAEENKNANW   45 (70)
T ss_dssp             HHTCSCHHHHHHHHHHCTTCSS
T ss_pred             HHHCCCHHHHHHHHHHCCCCCC
T ss_conf             9955049999999985889980


No 7  
>>3fhg_A Mjogg, N-glycosylase/DNA lyase, DNA-; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, ssogg, DNA damage, DNA repair, glycosidase, hydrolase; 1.90A {Sulfolobus solfataricus} (A:143-207)
Probab=44.49  E-value=16  Score=17.60  Aligned_cols=23  Identities=13%  Similarity=0.148  Sum_probs=17.2

Q ss_pred             HHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf             62999999996589998321469
Q gi|254780248|r   79 LSRLALRELGGVGKIPGIIKSSW  101 (101)
Q Consensus        79 lSRi~fRela~~G~ipGv~KaSW  101 (101)
                      |-||.+|-|...|.+++..-.+|
T Consensus         3 LDrHILr~l~~~g~i~e~~pk~~   25 (65)
T 3fhg_A            3 IDRHIIDFMRRIGAIGETNVKQL   25 (65)
T ss_dssp             CCHHHHHHHHHTTSSCCCCCSCC
T ss_pred             HHHHHHHHHHHCCCCCCCCCCCC
T ss_conf             68899999999088689997731


No 8  
>>1z4h_A TORI, TOR inhibition protein; winged helix, reverse turn, protein binding, DNA binding protein; NMR {Escherichia coli} (A:)
Probab=32.07  E-value=15  Score=17.68  Aligned_cols=27  Identities=11%  Similarity=0.188  Sum_probs=21.9

Q ss_pred             CHHHHHHCHHHHHHHHHHHCCCCCC-CC
Q ss_conf             1144042562999999996589998-32
Q gi|254780248|r   71 RGVYRDFRLSRLALRELGGVGKIPG-II   97 (101)
Q Consensus        71 Rgv~r~f~lSRi~fRela~~G~ipG-v~   97 (101)
                      .-|-..+|+|+-.|.+++..|.+|= ++
T Consensus        14 ~eva~~lgis~~ti~~~~~~G~~P~~~k   41 (66)
T 1z4h_A           14 KFIMADTGFGKTFIYDRIKSGDLPKAKV   41 (66)
T ss_dssp             HHHHHHHSSCHHHHHHHHHHHHCCCSEE
T ss_pred             HHHHHHHCCCHHHHHHHHHCCCCCCCEE
T ss_conf             9999997978999866731896148885


No 9  
>>2okt_A OSB synthetase, O-succinylbenzoic acid synthetase; enolase, structural genomics, protein structure initiative, PSI, nysgrc; 1.30A {Staphylococcus aureus subsp} PDB: 2ola_A 3h70_A (A:114-122,A:275-342)
Probab=32.06  E-value=26  Score=16.25  Aligned_cols=25  Identities=32%  Similarity=0.400  Sum_probs=21.0

Q ss_pred             HHHHHHCHHHHHHHHHHHCCCCCCC
Q ss_conf             1440425629999999965899983
Q gi|254780248|r   72 GVYRDFRLSRLALRELGGVGKIPGI   96 (101)
Q Consensus        72 gv~r~f~lSRi~fRela~~G~ipGv   96 (101)
                      +|--.|||||..---||..|.-||=
T Consensus         6 ~~~~EyGLSRYFTAmLa~~gdYPgD   30 (77)
T 2okt_A            6 SVAYEYGLSRYFTAMLARKGDYPGD   30 (77)
T ss_dssp             EEECCCHHHHHHHHHHHTTSSSCCB
T ss_pred             CCCCCHHHHHHHHHHHHCCCCCCCC
T ss_conf             1001259999999999678787877


No 10 
>>2vbc_A Dengue 4 NS3 FULL-length protein; transmembrane, RNA replication, NS2B-NS3 protease; 3.15A {Dengue virus type 4} (A:176-323,A:482-562)
Probab=27.04  E-value=40  Score=15.13  Aligned_cols=55  Identities=18%  Similarity=0.111  Sum_probs=36.7

Q ss_pred             HHHHHHHHHHHCCH--HHHHHHHCCCCCCCCCCCHHHHHHCHHHHHHHHHHHCCCCC
Q ss_conf             99999999720860--44324440221435664114404256299999999658999
Q gi|254780248|r   40 ERFDAMLQLGSLPR--DGSRVRVRNRCEISGRSRGVYRDFRLSRLALRELGGVGKIP   94 (101)
Q Consensus        40 ~r~~a~~kL~~Lpr--nss~tRi~NRC~~TGR~Rgv~r~f~lSRi~fRela~~G~ip   94 (101)
                      .=-+|++-|+++--  ---++-.-.-=-.+--+-|.||.=+-.|-.|++|...|.+|
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (229)
T 2vbc_A          154 HWTEAKMLLDNIYTPEGIIPTLFGPEREKTQAIDGEFRLRGEQRKTFVELMRRGDLP  210 (229)
T ss_dssp             HHHHHHHHHTTSCCTTCCCCCCCGGGGGGCCSCTTTTCCCTTHHHHHHHHHHTSCCC
T ss_pred             CHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCCCCCCEEECHHHHHHHHHHHHHCCCC
T ss_conf             525877655321153566532345056630357873550314578899987625552


No 11 
>>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A (A:1-159,A:317-397)
Probab=25.87  E-value=40  Score=15.11  Aligned_cols=55  Identities=16%  Similarity=0.053  Sum_probs=36.6

Q ss_pred             HHHHHHHHHHHCCH--HHHHHHHCCCCCCCCCCCHHHHHHCHHHHHHHHHHHCCCCC
Q ss_conf             99999999720860--44324440221435664114404256299999999658999
Q gi|254780248|r   40 ERFDAMLQLGSLPR--DGSRVRVRNRCEISGRSRGVYRDFRLSRLALRELGGVGKIP   94 (101)
Q Consensus        40 ~r~~a~~kL~~Lpr--nss~tRi~NRC~~TGR~Rgv~r~f~lSRi~fRela~~G~ip   94 (101)
                      .=-+|++-|+++--  ---++-.-.---.+--+-|.||.=+-.|-.|+++...|.+|
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (240)
T 2z83_A          165 HWTEAKIMLDNIHMPNGLVAQLYGPEREKAFTMDGEYRLRGEEKKNFLELLRTADLP  221 (240)
T ss_dssp             HHHHHHHHHHTSCCTTSCCCCCCGGGGGGCCCCTTTTCCCHHHHHHHHHHHHTSCCC
T ss_pred             CCCHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCC
T ss_conf             004277787536562333200037577736698602331021467899998635898


No 12 
>>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A (A:1-140,A:295-379)
Probab=24.88  E-value=43  Score=14.95  Aligned_cols=55  Identities=16%  Similarity=0.115  Sum_probs=36.5

Q ss_pred             HHHHHHHHHHHCCH--HHHHHHHCCCCCCCCCCCHHHHHHCHHHHHHHHHHHCCCCC
Q ss_conf             99999999720860--44324440221435664114404256299999999658999
Q gi|254780248|r   40 ERFDAMLQLGSLPR--DGSRVRVRNRCEISGRSRGVYRDFRLSRLALRELGGVGKIP   94 (101)
Q Consensus        40 ~r~~a~~kL~~Lpr--nss~tRi~NRC~~TGR~Rgv~r~f~lSRi~fRela~~G~ip   94 (101)
                      .=-+|++-|+++--  ---++-.-.-=-.+--+-|.||.=+-.|-.|+++...|.+|
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (225)
T 2v6i_A          146 SWTEARMLLDNVHVQGGVVAQLYTPEREKTEAYEGEFKLKTNQRKVFSELIRTGDLP  202 (225)
T ss_dssp             HHHHHHHHHTTCCCTTSCCCCCCGGGGGGCCCCTTTTCCCHHHHHHHHHHHHTTCCC
T ss_pred             CHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCEEECCHHHHHHHHHHHHHCCCC
T ss_conf             037889888766400243211257367501379966874688899999987645884


No 13 
>>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} (A:1-145,A:303-387)
Probab=24.79  E-value=43  Score=14.94  Aligned_cols=56  Identities=20%  Similarity=0.092  Sum_probs=36.7

Q ss_pred             HHHHHHHHHHHHCCHHHHH--HHHCCCCCCCCCCCHHHHHHCHHHHHHHHHHHCCCCC
Q ss_conf             9999999997208604432--4440221435664114404256299999999658999
Q gi|254780248|r   39 EERFDAMLQLGSLPRDGSR--VRVRNRCEISGRSRGVYRDFRLSRLALRELGGVGKIP   94 (101)
Q Consensus        39 ~~r~~a~~kL~~Lprnss~--tRi~NRC~~TGR~Rgv~r~f~lSRi~fRela~~G~ip   94 (101)
                      ..=-+|++-|+++---..+  +-.-.-=-.+--+-|.||.=+-.|-.|+++...|.+|
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (230)
T 1yks_A          150 VCWLEASMLLDNMEVRGGMVAPLYGVEGTKTPVSPGEMRLRDDQRKVFRELVRNCDLP  207 (230)
T ss_dssp             HHHHHHHHHHTTSCCGGGCCCCCSTTHHHHSSSCTTTTCCCHHHHHHHHHHHHTTCCC
T ss_pred             CCHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf             3334699998752145776643334255513478854220255788999998754675


No 14 
>>2wv9_A Flavivirin protease NS2B regulatory subunit, flavivirin protease NS3 catalytic subunit...; NS2B-NS3 protease; 2.75A {Murray valley encephalitis virus} (A:232-377,A:537-633)
Probab=24.67  E-value=44  Score=14.89  Aligned_cols=56  Identities=16%  Similarity=0.080  Sum_probs=37.1

Q ss_pred             HHHHHHHHHHHHCC--HHHHHHHHCCCCCCCCCCCHHHHHHCHHHHHHHHHHHCCCCC
Q ss_conf             99999999972086--044324440221435664114404256299999999658999
Q gi|254780248|r   39 EERFDAMLQLGSLP--RDGSRVRVRNRCEISGRSRGVYRDFRLSRLALRELGGVGKIP   94 (101)
Q Consensus        39 ~~r~~a~~kL~~Lp--rnss~tRi~NRC~~TGR~Rgv~r~f~lSRi~fRela~~G~ip   94 (101)
                      ..=-+|++-|+++-  .---++-.-.-=..+--+-|.||.=+-.|-.||+|...|.+|
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (243)
T 2wv9_A          151 AHWTEAKILLDNIHLPNGLVAQLYGPERDKTYTMDGEYRLRGEERKTFLELIKTADLP  208 (243)
T ss_dssp             HHHHHHHHHHHTSCBTTTBCCCCCGGGGGGCCCCTTTTCCCHHHHHHHHHHHHTSCCC
T ss_pred             HHHHHHHHHHHHCCCCCCCCCCCCCCCHHHCCCCCCCEECCCCCCCCHHHHHHHCCCC
T ss_conf             6364799999846998877676678972323467860110224532455521342587


No 15 
>>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase, transferase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A (A:1-156,A:315-395)
Probab=24.60  E-value=44  Score=14.87  Aligned_cols=55  Identities=18%  Similarity=0.111  Sum_probs=36.5

Q ss_pred             HHHHHHHHHHHCCH--HHHHHHHCCCCCCCCCCCHHHHHHCHHHHHHHHHHHCCCCC
Q ss_conf             99999999720860--44324440221435664114404256299999999658999
Q gi|254780248|r   40 ERFDAMLQLGSLPR--DGSRVRVRNRCEISGRSRGVYRDFRLSRLALRELGGVGKIP   94 (101)
Q Consensus        40 ~r~~a~~kL~~Lpr--nss~tRi~NRC~~TGR~Rgv~r~f~lSRi~fRela~~G~ip   94 (101)
                      .=-+|++-|+++--  ---++-.-.---.+--+-|.||.=+-.|-.|+++...|.+|
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (237)
T 2jlq_A          162 HWTEAKMLLDNIYTPEGIIPTLFGPEREKTQAIDGEFRLRGEQRKTFVELMRRGDLP  218 (237)
T ss_dssp             HHHHHHHHHTTCCCTTCCCCCCCGGGGGGCCCCTTTTCCCHHHHHHHHHHHHTSCCC
T ss_pred             HHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCCCCEECCHHHHHHHHHHHHHCCCC
T ss_conf             589999999876412575321313666324468971561577788999987635663


No 16 
>>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A (A:481-651)
Probab=22.83  E-value=21  Score=16.89  Aligned_cols=24  Identities=17%  Similarity=0.372  Sum_probs=19.1

Q ss_pred             HCHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf             256299999999658999832146
Q gi|254780248|r   77 FRLSRLALRELGGVGKIPGIIKSS  100 (101)
Q Consensus        77 f~lSRi~fRela~~G~ipGv~KaS  100 (101)
                      =+|+++.-.-++...-||||+-|.
T Consensus       130 eKL~~~rP~TlgqAsRI~GVTPa~  153 (171)
T 3ces_A          130 AKLNDHKPASIGQASRISGVTPAA  153 (171)
T ss_dssp             ------------------------
T ss_pred             HHHHHCCCCCHHHHHCCCCCCHHH
T ss_conf             999756999988886789989999


No 17 
>>1eh9_A Glycosyltrehalose trehalohydrolase; alpha/beta barrel, calcium binding, covalent dimer,; 3.00A {Sulfolobus solfataricus} (A:309-363)
Probab=20.05  E-value=31  Score=15.80  Aligned_cols=26  Identities=19%  Similarity=0.363  Sum_probs=19.4

Q ss_pred             CCCCCCCCCHHHHHHCHHHHHHHHHH
Q ss_conf             21435664114404256299999999
Q gi|254780248|r   63 RCEISGRSRGVYRDFRLSRLALRELG   88 (101)
Q Consensus        63 RC~~TGR~Rgv~r~f~lSRi~fRela   88 (101)
                      +..+||..-|+|.+|+--...-+-+.
T Consensus         7 hv~lTGE~~gYY~Dfg~~~~la~al~   32 (55)
T 1eh9_A            7 HAYLTGERQGYYTDFGNLDDIVKSYK   32 (55)
T ss_dssp             HHHHSCCCSGGGGGCCSHHHHHHHHH
T ss_pred             HHHHCCCCCCCHHCCCCHHHHHHHHH
T ss_conf             99854543220001100688998765


Done!