Query gi|254780248|ref|YP_003064661.1| 30S ribosomal protein S14 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 101
No_of_seqs 107 out of 1176
Neff 5.4
Searched_HMMs 23785
Date Tue May 24 05:31:09 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780248.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ofo_N 30S ribosomal protein S 100.0 4E-42 0 275.8 1.2 100 2-101 1-100 (100)
2 3bbn_N Ribosomal protein S14; 100.0 1.1E-41 0 273.2 -6.0 100 1-101 1-100 (100)
3 2vqe_N 30S ribosomal protein S 99.9 9.4E-24 3.9E-28 164.0 1.8 54 46-101 8-61 (61)
4 2zkq_n 40S ribosomal protein S 91.8 0.036 1.5E-06 32.7 0.8 30 61-90 18-49 (56)
5 3jyv_N 40S ribosomal protein S 91.5 0.042 1.8E-06 32.3 0.9 29 62-90 15-45 (50)
6 1y6u_A XIS, excisionase from t 38.9 12 0.00052 17.3 1.9 23 74-96 23-45 (70)
7 1z4h_A TORI, TOR inhibition pr 20.5 22 0.00092 15.8 0.5 26 70-95 13-38 (66)
8 1l8d_A DNA double-strand break 11.8 48 0.002 13.8 0.4 25 38-71 33-57 (112)
9 2ko6_A Uncharacterized protein 10.8 77 0.0033 12.5 1.5 22 78-99 50-71 (89)
10 2zqe_A MUTS2 protein; alpha/be 10.1 82 0.0035 12.3 1.3 35 42-76 15-49 (83)
No 1
>3ofo_N 30S ribosomal protein S14; protein biosynthesis, ribosomes, RNA, tRNA, transfer, eryThr ketolide, macrolide, antibiotic, EXIT, peptidyl; 3.10A {Escherichia coli} PDB: 1p6g_N 1p87_N 2aw7_N 2avy_N 2i2u_N 2i2p_N* 2qan_N* 2qb9_N* 2qbb_N* 2qbd_N 2qbf_N 2qbh_N* 2qbj_N* 2qou_N* 2qow_N* 2qoy_N* 2qp0_N* 2vho_N 2vhp_N 2z4k_N* ...
Probab=100.00 E-value=4e-42 Score=275.78 Aligned_cols=100 Identities=44% Similarity=0.714 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCHHHHHHCHHH
Q ss_conf 12689999999999999999999999998348798989999999997208604432444022143566411440425629
Q gi|254780248|r 2 AKVSAVERNKRRLRVVAKQASKRLALKKIVMDKSVTLEERFDAMLQLGSLPRDGSRVRVRNRCEISGRSRGVYRDFRLSR 81 (101)
Q Consensus 2 akks~i~rd~kRr~l~~k~~~kR~~lk~~~~~~~l~~~~r~~a~~kL~~Lprnss~tRi~NRC~~TGR~Rgv~r~f~lSR 81 (101)
||+|+|+||.+|++++++|+.+|.+||+++.|+++|++++++|+.+|++||+|||||||+|||++||||||||++|||||
T Consensus 1 AK~s~i~R~~kR~~l~~k~~~kR~~Lk~i~~~~~l~~~~r~~a~~kL~~LPrnSs~~RirNRC~~TGR~Rgv~r~f~lsR 80 (100)
T 3ofo_N 1 AKQSMKAREVKRVALADKYFAKRAELKAIISDVNASDEDRWNAVLKLQTLPRDSSPSRQRNRCRQTGRPHGFLRKFGLSR 80 (100)
T ss_dssp CCHHHHHHHHHHHHHHHHSTTTGGGTTTTTTSSCC----CCTHHHHSCCCCSSCSGGGCCCCCTTTCCCSSEETTTTEEH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCHHHCCCHHCCCCCCCCCCCCCCHH
T ss_conf 90489999999999999999999999999847799999999999999847834200154046023796652213425439
Q ss_pred HHHHHHHHCCCCCCCCCCCC
Q ss_conf 99999996589998321469
Q gi|254780248|r 82 LALRELGGVGKIPGIIKSSW 101 (101)
Q Consensus 82 i~fRela~~G~ipGv~KaSW 101 (101)
|+|||||+.|+||||+||||
T Consensus 81 i~fRela~~G~ipGv~KaSW 100 (100)
T 3ofo_N 81 IKVREAAMRGEIPGLKKASW 100 (100)
T ss_dssp HHHHHHHTTSCSTTEEECCC
T ss_pred HHHHHHHHCCCCCCEECCCC
T ss_conf 99999997697888431679
No 2
>3bbn_N Ribosomal protein S14; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=100.00 E-value=1.1e-41 Score=273.24 Aligned_cols=100 Identities=33% Similarity=0.525 Sum_probs=97.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCHHHHHHCHH
Q ss_conf 91268999999999999999999999999834879898999999999720860443244402214356641144042562
Q gi|254780248|r 1 MAKVSAVERNKRRLRVVAKQASKRLALKKIVMDKSVTLEERFDAMLQLGSLPRDGSRVRVRNRCEISGRSRGVYRDFRLS 80 (101)
Q Consensus 1 Makks~i~rd~kRr~l~~k~~~kR~~lk~~~~~~~l~~~~r~~a~~kL~~Lprnss~tRi~NRC~~TGR~Rgv~r~f~lS 80 (101)
|||||+|+||.+|++++++||.+|.+|+++++|. ++++++++|+.+|++||+||||||++|||++||||||||++||||
T Consensus 1 Makks~I~rd~kRr~l~~k~~~~R~~lk~~i~~~-~~~~~r~~~~~kL~~lprnss~~Ri~NRC~~TGR~Rg~~r~f~lS 79 (100)
T 3bbn_N 1 MARKSLIQREKKRRNLEQKYHLIRRSSKQEIRKV-TSLSDKWEIHGKLQSPPRNSAPARLHRRCFLTGRPRANIRDFGLS 79 (100)
T ss_dssp -CCTTHHHHHHTTTSSTTTTSSSTTTTTTTTSSC-CSSSCCCSHHHHSCCSCSSCCGGGCCCCCSSSCCSSSBCTTTCSB
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCCCCCCCCH
T ss_conf 9568999999999999999999999999988056-887799999999874775446589966355689976224554645
Q ss_pred HHHHHHHHHCCCCCCCCCCCC
Q ss_conf 999999996589998321469
Q gi|254780248|r 81 RLALRELGGVGKIPGIIKSSW 101 (101)
Q Consensus 81 Ri~fRela~~G~ipGv~KaSW 101 (101)
||+|||||+.|+||||+||||
T Consensus 80 Ri~fR~lA~~G~ipGv~KaSW 100 (100)
T 3bbn_N 80 GHILREMVHTCLLPGATRSSW 100 (100)
T ss_dssp TTHHHHHHTTTCSSSCEECCC
T ss_pred HHHHHHHHHCCCCCCEECCCC
T ss_conf 999999998698888522779
No 3
>2vqe_N 30S ribosomal protein S14 type Z; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: g.39.1.7 PDB: 1gix_Q* 1hnw_N* 1hnx_N* 1hnz_N* 1hr0_N 1ibk_N* 1ibl_N* 1ibm_N 1jgo_Q* 1jgp_Q* 1jgq_Q* 1ml5_Q* 1xmo_N* 1xmq_N* 1xnq_N* 1xnr_N* 1yl4_Q 2b64_N* 2b9m_N* 2b9o_N* ...
Probab=99.87 E-value=9.4e-24 Score=164.05 Aligned_cols=54 Identities=44% Similarity=0.799 Sum_probs=50.1
Q ss_pred HHHHHCCHHHHHHHHCCCCCCCCCCCHHHHHHCHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 99720860443244402214356641144042562999999996589998321469
Q gi|254780248|r 46 LQLGSLPRDGSRVRVRNRCEISGRSRGVYRDFRLSRLALRELGGVGKIPGIIKSSW 101 (101)
Q Consensus 46 ~kL~~Lprnss~tRi~NRC~~TGR~Rgv~r~f~lSRi~fRela~~G~ipGv~KaSW 101 (101)
.+++++|++ +||++|||++||||||||++||||||+|||+|+.|+||||+||||
T Consensus 8 ~k~~~~pk~--~tR~~nRC~~tGR~Rg~~r~f~lsRi~fR~la~~G~iPGv~KaSW 61 (61)
T 2vqe_N 8 EKAKRTPKF--KVRAYTRCVRCGRARSVYRFFGLCRICLRELAHKGQLPGVRKASW 61 (61)
T ss_dssp GGCCSCCSS--GGGCCCCCTTTCCCTTCCTTTSSCHHHHHHHHHHTCSSSCEECCC
T ss_pred HHHHCCCCC--CCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEECCC
T ss_conf 997718998--763302125789976202452617999999997598888360679
No 4
>2zkq_n 40S ribosomal protein S29E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} PDB: 1s1h_N
Probab=91.81 E-value=0.036 Score=32.73 Aligned_cols=30 Identities=17% Similarity=0.495 Sum_probs=26.4
Q ss_pred CCCCCCCCCCCHHHHHHC--HHHHHHHHHHHC
Q ss_conf 022143566411440425--629999999965
Q gi|254780248|r 61 RNRCEISGRSRGVYRDFR--LSRLALRELGGV 90 (101)
Q Consensus 61 ~NRC~~TGR~Rgv~r~f~--lSRi~fRela~~ 90 (101)
-+.|.++|+..|++++|| |||-+|||.|..
T Consensus 18 sr~Cr~Cg~~~glIrKYgL~~CRqCFre~A~d 49 (56)
T 2zkq_n 18 SRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKD 49 (56)
T ss_dssp CCCCSSSCCSTTCCTTTCCCSCHHHHHHTTTT
T ss_pred CCEEEECCCCCCEEEEECCCHHHHHHHHHHHH
T ss_conf 76236779974311001732288899988785
No 5
>3jyv_N 40S ribosomal protein S29(A); eukaryotic ribosome, RACK1 protein, flexible fitting; HET: 2MG H2U M2G OMC OMG YYG PSU 5MC 7MG 5MU 1MA; 8.90A {Thermomyces lanuginosus}
Probab=91.54 E-value=0.042 Score=32.31 Aligned_cols=29 Identities=21% Similarity=0.537 Sum_probs=26.2
Q ss_pred CCCCCCCCCCHHHHHHC--HHHHHHHHHHHC
Q ss_conf 22143566411440425--629999999965
Q gi|254780248|r 62 NRCEISGRSRGVYRDFR--LSRLALRELGGV 90 (101)
Q Consensus 62 NRC~~TGR~Rgv~r~f~--lSRi~fRela~~ 90 (101)
+.|.++|+..|++++|| +||-+|||.|..
T Consensus 15 r~CrvCg~~~glIrKYgL~~CRqCFre~A~d 45 (50)
T 3jyv_N 15 RQCRVCSSHTGLVRKYDLNICRQCFREKAND 45 (50)
T ss_dssp CCCSSSCCCSSCCSSCSCSSSSHHHHHHHHH
T ss_pred CEEEECCCCCCEEEECCCCHHHHHHHHHHHH
T ss_conf 7027779984553122763067799998986
No 6
>1y6u_A XIS, excisionase from transposon TN916; structure, DNA architectural protein, tyrosine recombinase, winged-helix protein; NMR {Enterococcus faecalis}
Probab=38.89 E-value=12 Score=17.32 Aligned_cols=23 Identities=26% Similarity=0.299 Sum_probs=19.2
Q ss_pred HHHHCHHHHHHHHHHHCCCCCCC
Q ss_conf 40425629999999965899983
Q gi|254780248|r 74 YRDFRLSRLALRELGGVGKIPGI 96 (101)
Q Consensus 74 ~r~f~lSRi~fRela~~G~ipGv 96 (101)
-..||+++-.+|+|++.+..|+.
T Consensus 23 a~Y~gIg~~klr~L~~e~~~~~f 45 (70)
T 1y6u_A 23 SKYFRIGENKLRRLAEENKNANW 45 (70)
T ss_dssp HHHTCSCHHHHHHHHHHCTTCSS
T ss_pred HHHHCCCHHHHHHHHHHCCCCCC
T ss_conf 99969279999999984889997
No 7
>1z4h_A TORI, TOR inhibition protein; winged helix, reverse turn, protein binding, DNA binding protein; NMR {Escherichia coli}
Probab=20.48 E-value=22 Score=15.80 Aligned_cols=26 Identities=12% Similarity=0.156 Sum_probs=20.9
Q ss_pred CCHHHHHHCHHHHHHHHHHHCCCCCC
Q ss_conf 41144042562999999996589998
Q gi|254780248|r 70 SRGVYRDFRLSRLALRELGGVGKIPG 95 (101)
Q Consensus 70 ~Rgv~r~f~lSRi~fRela~~G~ipG 95 (101)
-.-|....|+||-.+..++..|.+|=
T Consensus 13 ~keV~~~~glsrstiy~~i~~G~FP~ 38 (66)
T 1z4h_A 13 LKFIMADTGFGKTFIYDRIKSGDLPK 38 (66)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHCCCHHHHHHHHHCCCCCC
T ss_conf 99999998979999999998799999
No 8
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=11.76 E-value=48 Score=13.75 Aligned_cols=25 Identities=20% Similarity=0.473 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCC
Q ss_conf 8999999999720860443244402214356641
Q gi|254780248|r 38 LEERFDAMLQLGSLPRDGSRVRVRNRCEISGRSR 71 (101)
Q Consensus 38 ~~~r~~a~~kL~~Lprnss~tRi~NRC~~TGR~R 71 (101)
..+.-.|...|.+ ..-+|-+||||=
T Consensus 33 i~elkKal~ELk~---------a~GkCPvCgreL 57 (112)
T 1l8d_A 33 IGDLKTAIEELKK---------AKGKCPVCGREL 57 (112)
T ss_dssp HHHHHHHHHHHTT---------CSEECTTTCCEE
T ss_pred HHHHHHHHHHHHH---------HCCCCCCCCCCC
T ss_conf 9999999999997---------478799889937
No 9
>2ko6_A Uncharacterized protein YIHD; alpha protein, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=10.79 E-value=77 Score=12.46 Aligned_cols=22 Identities=27% Similarity=0.442 Sum_probs=15.9
Q ss_pred CHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 5629999999965899983214
Q gi|254780248|r 78 RLSRLALRELGGVGKIPGIIKS 99 (101)
Q Consensus 78 ~lSRi~fRela~~G~ipGv~Ka 99 (101)
=+-....|.-...-.|||++|-
T Consensus 50 lIYhLKMr~s~k~e~IPGlkKD 71 (89)
T 2ko6_A 50 LIYHLKMRDSAKDAVIPGLQKD 71 (89)
T ss_dssp HHHHHHHHHHTTSSSCSSCCCC
T ss_pred EEEEHEECCCCCCCCCCCCCHH
T ss_conf 0000000488766758861022
No 10
>2zqe_A MUTS2 protein; alpha/beta, ATP-binding, DNA-binding, nucleotide-binding, DNA binding protein; 1.70A {Thermus thermophilus HB8}
Probab=10.05 E-value=82 Score=12.30 Aligned_cols=35 Identities=14% Similarity=0.314 Sum_probs=21.9
Q ss_pred HHHHHHHHHCCHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 99999972086044324440221435664114404
Q gi|254780248|r 42 FDAMLQLGSLPRDGSRVRVRNRCEISGRSRGVYRD 76 (101)
Q Consensus 42 ~~a~~kL~~Lprnss~tRi~NRC~~TGR~Rgv~r~ 76 (101)
.+|...|.+.=-++-...++.-+++||...|+.+.
T Consensus 15 ~eA~~~l~~~i~~a~~~~~~~v~IIHGkG~gvLk~ 49 (83)
T 2zqe_A 15 AEALLEVDQALEEARALGLSTLRLLHGKGTGALRQ 49 (83)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEEEECCSTTSHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHH
T ss_conf 99999999999999985993899994478823899
Done!