Query gi|254780248|ref|YP_003064661.1| 30S ribosomal protein S14 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 101
No_of_seqs 107 out of 1176
Neff 5.4
Searched_HMMs 13730
Date Tue May 24 03:11:00 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780248.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2qaln1 g.39.1.7 (N:1-100) Rib 100.0 1.4E-42 0 277.1 2.9 100 2-101 1-100 (100)
2 d2uubn1 g.39.1.7 (N:2-61) Ribo 99.9 4.1E-23 3E-27 158.7 2.2 56 44-101 5-60 (60)
3 d2bmfa1 c.37.1.14 (A:483-618) 31.5 11 0.00083 16.1 2.0 53 42-94 7-61 (136)
4 d1r8ea1 a.6.1.3 (A:3-120) Tran 19.1 27 0.0019 13.8 2.5 24 73-96 9-33 (118)
5 d1k6ya1 a.4.10.1 (A:1-46) N-te 7.6 60 0.0044 11.7 1.2 23 70-92 19-41 (46)
6 d1yuza2 g.41.5.1 (A:167-202) N 7.3 52 0.0038 12.0 0.4 16 62-77 21-36 (36)
7 d1g3wa3 b.34.1.2 (A:148-224) D 7.0 64 0.0047 11.5 1.9 16 82-97 30-45 (77)
8 d1whga_ b.34.10.1 (A:) Tubulin 7.0 31 0.0023 13.4 -0.9 26 54-79 29-58 (113)
9 d1jb0c_ d.58.1.2 (C:) Photosys 6.1 44 0.0032 12.5 -0.4 14 56-69 2-15 (80)
10 d2fug34 d.58.1.5 (3:96-246) NA 6.1 42 0.0031 12.6 -0.6 16 54-69 76-91 (151)
No 1
>d2qaln1 g.39.1.7 (N:1-100) Ribosomal protein S14 {Escherichia coli [TaxId: 562]}
Probab=100.00 E-value=1.4e-42 Score=277.12 Aligned_cols=100 Identities=44% Similarity=0.714 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCHHHHHHCHHH
Q ss_conf 12689999999999999999999999998348798989999999997208604432444022143566411440425629
Q gi|254780248|r 2 AKVSAVERNKRRLRVVAKQASKRLALKKIVMDKSVTLEERFDAMLQLGSLPRDGSRVRVRNRCEISGRSRGVYRDFRLSR 81 (101)
Q Consensus 2 akks~i~rd~kRr~l~~k~~~kR~~lk~~~~~~~l~~~~r~~a~~kL~~Lprnss~tRi~NRC~~TGR~Rgv~r~f~lSR 81 (101)
||||+|+||.+|++|+++|+.+|.+|++++.|+++|.|++++|+.+|++||+||||||++|||++||||||||++|||||
T Consensus 1 AKkS~i~Rd~kR~~l~~ky~~kR~~Lk~i~~n~~l~~e~r~~a~~kL~~LPrnss~tRirnRC~~TGR~Rg~~r~f~lsR 80 (100)
T d2qaln1 1 AKQSMKAREVKRVALADKYFAKRAELKAIISDVNASDEDRWNAVLKLQTLPRDSSPSRQRNRCRQTGRPHGFLRKFGLSR 80 (100)
T ss_dssp CCHHHHHHHHHHHHHHHHTGGGTGGGTTTTTSSCC----CCHHHHHHTTTTSTTCSTTCCCCCSSSCCSSSCBTTTTBCH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCEEECCCCCHH
T ss_conf 90389999999999999999999999999847789999999999998627843036888751303797653312435329
Q ss_pred HHHHHHHHCCCCCCCCCCCC
Q ss_conf 99999996589998321469
Q gi|254780248|r 82 LALRELGGVGKIPGIIKSSW 101 (101)
Q Consensus 82 i~fRela~~G~ipGv~KaSW 101 (101)
|+|||||+.|+||||+||||
T Consensus 81 i~fR~la~~G~lpGv~KaSW 100 (100)
T d2qaln1 81 IKVREAAMRGEIPGLKKASW 100 (100)
T ss_dssp HHHHHHHHHTCSTTCEECCC
T ss_pred HHHHHHHHCCCCCCEECCCC
T ss_conf 99999997697888622679
No 2
>d2uubn1 g.39.1.7 (N:2-61) Ribosomal protein S14 {Thermus thermophilus [TaxId: 274]}
Probab=99.85 E-value=4.1e-23 Score=158.71 Aligned_cols=56 Identities=43% Similarity=0.778 Sum_probs=52.8
Q ss_pred HHHHHHHCCHHHHHHHHCCCCCCCCCCCHHHHHHCHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 9999720860443244402214356641144042562999999996589998321469
Q gi|254780248|r 44 AMLQLGSLPRDGSRVRVRNRCEISGRSRGVYRDFRLSRLALRELGGVGKIPGIIKSSW 101 (101)
Q Consensus 44 a~~kL~~Lprnss~tRi~NRC~~TGR~Rgv~r~f~lSRi~fRela~~G~ipGv~KaSW 101 (101)
...+++++|++ +||++|||++||||||||++||||||+|||+|+.|+||||+||||
T Consensus 5 ~~~k~~~~pk~--~tR~~NRC~~tGR~Rg~~r~F~lsR~~fR~la~~G~ipGv~KaSW 60 (60)
T d2uubn1 5 LIEKAKRTPKF--KVRAYTRCVRCGRARSVYRFFGLCRICLRELAHKGQLPGVRKASW 60 (60)
T ss_dssp GGGGGCSCCSS--GGGCCCCCTTTCCCSSBCTTTSCBHHHHHHHHHHTCSTTCEECCC
T ss_pred HHHHHHCCCCC--CCCCCEECCCCCCCCEEECCCCCHHHHHHHHHHCCCCCCEEECCC
T ss_conf 99987628988--763502136789976430344607999999998598888660579
No 3
>d2bmfa1 c.37.1.14 (A:483-618) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]}
Probab=31.55 E-value=11 Score=16.08 Aligned_cols=53 Identities=19% Similarity=0.191 Sum_probs=32.1
Q ss_pred HHHHHHHHHCCHHHHHH--HHCCCCCCCCCCCHHHHHHCHHHHHHHHHHHCCCCC
Q ss_conf 99999972086044324--440221435664114404256299999999658999
Q gi|254780248|r 42 FDAMLQLGSLPRDGSRV--RVRNRCEISGRSRGVYRDFRLSRLALRELGGVGKIP 94 (101)
Q Consensus 42 ~~a~~kL~~Lprnss~t--Ri~NRC~~TGR~Rgv~r~f~lSRi~fRela~~G~ip 94 (101)
-+|++-|+++---..++ -.-.-=--+--.-|.||.=+-.|-.||+|...|.+|
T Consensus 7 ~EAqmLLDNi~~~~g~va~~ygpE~~K~~~~~G~fRL~~E~RK~F~~Ll~~~D~p 61 (136)
T d2bmfa1 7 KEAKMLLDNINTPEGIIPSMFEPEREKVDAIDGEYRLRGEARKTFVDLMRRGDLP 61 (136)
T ss_dssp HHHHHHHTTCCCTTCCCCCCCGGGSTTCCCCTTTTCCCHHHHHHHHHHHHTSCCC
T ss_pred HHHHHHHHHCCCCCCCCEECCCCHHHCCCCCCCEEECCHHHHHHHHHHHHHCCCC
T ss_conf 6999988743587874100126012045689954663735579999998645995
No 4
>d1r8ea1 a.6.1.3 (A:3-120) Transcription activator BmrR {Bacillus subtilis [TaxId: 1423]}
Probab=19.09 E-value=27 Score=13.84 Aligned_cols=24 Identities=25% Similarity=0.205 Sum_probs=14.9
Q ss_pred HHHHHCHHHHHHHHHHHCCCC-CCC
Q ss_conf 440425629999999965899-983
Q gi|254780248|r 73 VYRDFRLSRLALRELGGVGKI-PGI 96 (101)
Q Consensus 73 v~r~f~lSRi~fRela~~G~i-pGv 96 (101)
+-+.+|+|...+|-.-..|+| |..
T Consensus 9 vA~~~gvs~~tlR~Ye~~GLl~P~~ 33 (118)
T d1r8ea1 9 VSKLANVSIKALRYYDKIDLFKPAY 33 (118)
T ss_dssp HHHHHTCCHHHHHHHHHTTSSCCSE
T ss_pred HHHHHCCCHHHHHHHHHCCCCCCCC
T ss_conf 9999896999999999858855345
No 5
>d1k6ya1 a.4.10.1 (A:1-46) N-terminal Zn binding domain of HIV integrase {Human immunodeficiency virus type 1 [TaxId: 11676]}
Probab=7.59 E-value=60 Score=11.68 Aligned_cols=23 Identities=22% Similarity=0.307 Sum_probs=17.0
Q ss_pred CCHHHHHHCHHHHHHHHHHHCCC
Q ss_conf 41144042562999999996589
Q gi|254780248|r 70 SRGVYRDFRLSRLALRELGGVGK 92 (101)
Q Consensus 70 ~Rgv~r~f~lSRi~fRela~~G~ 92 (101)
.++.-..|||++.+-|+.+..+.
T Consensus 19 ~~~L~~~F~ip~~vAr~IV~~C~ 41 (46)
T d1k6ya1 19 WRAMASDFNLPPVVAKEIVASCD 41 (46)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHCT
T ss_pred HHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 99999881989999999998789
No 6
>d1yuza2 g.41.5.1 (A:167-202) Nigerythrin, C-terminal domain {Desulfovibrio vulgaris [TaxId: 881]}
Probab=7.32 E-value=52 Score=12.04 Aligned_cols=16 Identities=19% Similarity=0.648 Sum_probs=12.9
Q ss_pred CCCCCCCCCCHHHHHH
Q ss_conf 2214356641144042
Q gi|254780248|r 62 NRCEISGRSRGVYRDF 77 (101)
Q Consensus 62 NRC~~TGR~Rgv~r~f 77 (101)
..|-++|-|.+.|..|
T Consensus 21 e~CPvCg~~~~~F~~f 36 (36)
T d1yuza2 21 EKCPICFRPKDTFTAY 36 (36)
T ss_dssp SBCTTTCCBGGGCEEC
T ss_pred CCCCCCCCCHHHCCCC
T ss_conf 8488899868991749
No 7
>d1g3wa3 b.34.1.2 (A:148-224) Diphtheria toxin repressor (DtxR) {Corynebacterium diphtheriae [TaxId: 1717]}
Probab=6.98 E-value=64 Score=11.49 Aligned_cols=16 Identities=13% Similarity=-0.101 Sum_probs=13.0
Q ss_pred HHHHHHHHCCCCCCCC
Q ss_conf 9999999658999832
Q gi|254780248|r 82 LALRELGGVGKIPGII 97 (101)
Q Consensus 82 i~fRela~~G~ipGv~ 97 (101)
-.|++|...|.+||-.
T Consensus 30 ~l~~~L~~AGv~PGa~ 45 (77)
T d1g3wa3 30 DQFTQLLDADIRVGSE 45 (77)
T ss_dssp THHHHHHHTTCCTTCE
T ss_pred HHHHHHHHCCCCCCCE
T ss_conf 9999999839999999
No 8
>d1whga_ b.34.10.1 (A:) Tubulin-specific chaperone B (SKAP1) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=6.96 E-value=31 Score=13.43 Aligned_cols=26 Identities=31% Similarity=0.524 Sum_probs=19.0
Q ss_pred HHHHHHHCCCCCCCCCC----CHHHHHHCH
Q ss_conf 44324440221435664----114404256
Q gi|254780248|r 54 DGSRVRVRNRCEISGRS----RGVYRDFRL 79 (101)
Q Consensus 54 nss~tRi~NRC~~TGR~----Rgv~r~f~l 79 (101)
.++...+-.||.+++.. +|+.++.|.
T Consensus 29 ~~~~~~VG~rv~V~~~~~~~r~G~vryvG~ 58 (113)
T d1whga_ 29 QASAISVGSRCEVRAPDHSLRRGTVMYVGL 58 (113)
T ss_dssp HHTTSCSSCEEEECCSSSSCEEEEEEEEEE
T ss_pred HCCCCCCCCEEEEECCCCCCEEEEEEEEEE
T ss_conf 122672789889973898835799999613
No 9
>d1jb0c_ d.58.1.2 (C:) Photosystem I iron-sulfur protein PsaC {Synechococcus elongatus [TaxId: 32046]}
Probab=6.14 E-value=44 Score=12.48 Aligned_cols=14 Identities=14% Similarity=0.330 Sum_probs=8.1
Q ss_pred HHHHHCCCCCCCCC
Q ss_conf 32444022143566
Q gi|254780248|r 56 SRVRVRNRCEISGR 69 (101)
Q Consensus 56 s~tRi~NRC~~TGR 69 (101)
+.+|+.|+|+-.|.
T Consensus 2 h~v~~~d~Ci~Cg~ 15 (80)
T d1jb0c_ 2 HTVKIYDTCIGCTQ 15 (80)
T ss_dssp CEEEEETTCCCCCH
T ss_pred CCCCCCCCCCCCCC
T ss_conf 72124797929547
No 10
>d2fug34 d.58.1.5 (3:96-246) NADH-quinone oxidoreductase chain 3, Nqo3, domain 2 {Thermus thermophilus [TaxId: 274]}
Probab=6.08 E-value=42 Score=12.60 Aligned_cols=16 Identities=25% Similarity=0.266 Sum_probs=0.0
Q ss_pred HHHHHHHCCCCCCCCC
Q ss_conf 4432444022143566
Q gi|254780248|r 54 DGSRVRVRNRCEISGR 69 (101)
Q Consensus 54 nss~tRi~NRC~~TGR 69 (101)
+....+-.|+|+++||
T Consensus 76 ~p~i~~d~~kCI~C~r 91 (151)
T d2fug34 76 SPFVILDRERCIHCKR 91 (151)
T ss_dssp SSSSCEECSCCCCCCH
T ss_pred CCEEEECCCCCCCCCH
T ss_conf 9757863887971856
Done!