RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780248|ref|YP_003064661.1| 30S ribosomal protein S14
[Candidatus Liberibacter asiaticus str. psy62]
         (101 letters)



>gnl|CDD|177013 CHL00074, rps14, ribosomal protein S14.
          Length = 100

 Score = 99.9 bits (250), Expect = 1e-22
 Identities = 46/101 (45%), Positives = 66/101 (65%), Gaps = 1/101 (0%)

Query: 1   MAKVSAVERNKRRLRVVAKQASKRLALKKIVMDKSVTLEERFDAMLQLGSLPRDGSRVRV 60
           MAK S ++R K+R ++V K   KR +LKK  + K  +L E+++   +L SLPR+ +  R+
Sbjct: 1   MAKKSLIQREKKRQKLVQKYHLKRRSLKK-EIKKVSSLSEKWEIHGKLQSLPRNSAPTRL 59

Query: 61  RNRCEISGRSRGVYRDFRLSRLALRELGGVGKIPGIIKSSW 101
            NRC ++GR RG YRDF LSR  LRE+     +PG+ KSSW
Sbjct: 60  HNRCFLTGRPRGNYRDFGLSRHVLREMAHACLLPGVTKSSW 100


>gnl|CDD|144002 pfam00253, Ribosomal_S14, Ribosomal protein S14p/S29e.  This family
           includes both ribosomal S14 from prokaryotes and S29
           from eukaryotes.
          Length = 55

 Score = 69.1 bits (170), Expect = 3e-13
 Identities = 30/55 (54%), Positives = 37/55 (67%)

Query: 46  LQLGSLPRDGSRVRVRNRCEISGRSRGVYRDFRLSRLALRELGGVGKIPGIIKSS 100
           L+L  LPR+ S  R RNRC ++GR RGV R F LSR+  REL   G IPG+ K+S
Sbjct: 1   LKLSKLPRNSSPTRGRNRCVLTGRPRGVIRKFGLSRICFRELAHKGLIPGVKKAS 55


>gnl|CDD|36952 KOG1741, KOG1741, KOG1741, Mitochondrial/chloroplast ribosomal
           protein S14/S29 [Translation, ribosomal structure and
           biogenesis].
          Length = 103

 Score = 66.5 bits (162), Expect = 2e-12
 Identities = 39/101 (38%), Positives = 63/101 (62%)

Query: 1   MAKVSAVERNKRRLRVVAKQASKRLALKKIVMDKSVTLEERFDAMLQLGSLPRDGSRVRV 60
            AK   + R+ +R ++  +   +R +LK+I  +  +  + R +A  +L +LPR+ +  R+
Sbjct: 3   GAKKWRILRDVKRRKLFKEYELERRSLKEISKNPILPEKLRDEAAEKLQALPRNSAPTRI 62

Query: 61  RNRCEISGRSRGVYRDFRLSRLALRELGGVGKIPGIIKSSW 101
           +NRC  +GR RGVYRDFRLSR   REL   G +PG+ ++SW
Sbjct: 63  KNRCVFTGRPRGVYRDFRLSRHVFRELADAGALPGVTRASW 103


>gnl|CDD|30548 COG0199, RpsN, Ribosomal protein S14 [Translation, ribosomal
           structure and biogenesis].
          Length = 61

 Score = 64.1 bits (156), Expect = 8e-12
 Identities = 32/61 (52%), Positives = 38/61 (62%)

Query: 41  RFDAMLQLGSLPRDGSRVRVRNRCEISGRSRGVYRDFRLSRLALRELGGVGKIPGIIKSS 100
           R  A L+L +LPR  S  R RNRC   GR RGV R F L R+  REL   G+IPG+ K+S
Sbjct: 1   RAMAKLKLKALPRPKSPGRGRNRCRRCGRPRGVIRKFGLCRICFRELAHKGEIPGVKKAS 60

Query: 101 W 101
           W
Sbjct: 61  W 61


>gnl|CDD|36857 KOG1644, KOG1644, KOG1644, U2-associated snRNP A' protein [RNA
           processing and modification].
          Length = 233

 Score = 24.5 bits (53), Expect = 7.1
 Identities = 11/39 (28%), Positives = 17/39 (43%), Gaps = 1/39 (2%)

Query: 15  RVVAKQASKRLALKK-IVMDKSVTLEERFDAMLQLGSLP 52
            VV      R  +K+ I    S+    R + +LQ G +P
Sbjct: 194 SVVTPTPEDREKIKEAIKNASSLAEINRLEQLLQSGQIP 232


>gnl|CDD|32980 COG3167, PilO, Tfp pilus assembly protein PilO [Cell motility and
          secretion / Intracellular trafficking and secretion].
          Length = 211

 Score = 24.2 bits (52), Expect = 8.7
 Identities = 13/54 (24%), Positives = 28/54 (51%), Gaps = 2/54 (3%)

Query: 1  MAKVSAVERNKRRLRVVAKQASKRLALKKIVMDKSVTLEERFDAMLQLGSLPRD 54
          + ++  +E  +  L+   +Q + + A  + +  +   +EERFD +L+   LP D
Sbjct: 48 LEELEELEAEEEELKSTYQQKAIQAANLEALRAQLAEMEERFDILLR--QLPSD 99


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.323    0.136    0.377 

Gapped
Lambda     K      H
   0.267   0.0571    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 1,143,331
Number of extensions: 53257
Number of successful extensions: 128
Number of sequences better than 10.0: 1
Number of HSP's gapped: 127
Number of HSP's successfully gapped: 12
Length of query: 101
Length of database: 6,263,737
Length adjustment: 68
Effective length of query: 33
Effective length of database: 4,794,325
Effective search space: 158212725
Effective search space used: 158212725
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (23.8 bits)