RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|254780248|ref|YP_003064661.1| 30S ribosomal protein S14 [Candidatus Liberibacter asiaticus str. psy62] (101 letters) >gnl|CDD|177013 CHL00074, rps14, ribosomal protein S14. Length = 100 Score = 99.9 bits (250), Expect = 1e-22 Identities = 46/101 (45%), Positives = 66/101 (65%), Gaps = 1/101 (0%) Query: 1 MAKVSAVERNKRRLRVVAKQASKRLALKKIVMDKSVTLEERFDAMLQLGSLPRDGSRVRV 60 MAK S ++R K+R ++V K KR +LKK + K +L E+++ +L SLPR+ + R+ Sbjct: 1 MAKKSLIQREKKRQKLVQKYHLKRRSLKK-EIKKVSSLSEKWEIHGKLQSLPRNSAPTRL 59 Query: 61 RNRCEISGRSRGVYRDFRLSRLALRELGGVGKIPGIIKSSW 101 NRC ++GR RG YRDF LSR LRE+ +PG+ KSSW Sbjct: 60 HNRCFLTGRPRGNYRDFGLSRHVLREMAHACLLPGVTKSSW 100 >gnl|CDD|144002 pfam00253, Ribosomal_S14, Ribosomal protein S14p/S29e. This family includes both ribosomal S14 from prokaryotes and S29 from eukaryotes. Length = 55 Score = 69.1 bits (170), Expect = 3e-13 Identities = 30/55 (54%), Positives = 37/55 (67%) Query: 46 LQLGSLPRDGSRVRVRNRCEISGRSRGVYRDFRLSRLALRELGGVGKIPGIIKSS 100 L+L LPR+ S R RNRC ++GR RGV R F LSR+ REL G IPG+ K+S Sbjct: 1 LKLSKLPRNSSPTRGRNRCVLTGRPRGVIRKFGLSRICFRELAHKGLIPGVKKAS 55 >gnl|CDD|36952 KOG1741, KOG1741, KOG1741, Mitochondrial/chloroplast ribosomal protein S14/S29 [Translation, ribosomal structure and biogenesis]. Length = 103 Score = 66.5 bits (162), Expect = 2e-12 Identities = 39/101 (38%), Positives = 63/101 (62%) Query: 1 MAKVSAVERNKRRLRVVAKQASKRLALKKIVMDKSVTLEERFDAMLQLGSLPRDGSRVRV 60 AK + R+ +R ++ + +R +LK+I + + + R +A +L +LPR+ + R+ Sbjct: 3 GAKKWRILRDVKRRKLFKEYELERRSLKEISKNPILPEKLRDEAAEKLQALPRNSAPTRI 62 Query: 61 RNRCEISGRSRGVYRDFRLSRLALRELGGVGKIPGIIKSSW 101 +NRC +GR RGVYRDFRLSR REL G +PG+ ++SW Sbjct: 63 KNRCVFTGRPRGVYRDFRLSRHVFRELADAGALPGVTRASW 103 >gnl|CDD|30548 COG0199, RpsN, Ribosomal protein S14 [Translation, ribosomal structure and biogenesis]. Length = 61 Score = 64.1 bits (156), Expect = 8e-12 Identities = 32/61 (52%), Positives = 38/61 (62%) Query: 41 RFDAMLQLGSLPRDGSRVRVRNRCEISGRSRGVYRDFRLSRLALRELGGVGKIPGIIKSS 100 R A L+L +LPR S R RNRC GR RGV R F L R+ REL G+IPG+ K+S Sbjct: 1 RAMAKLKLKALPRPKSPGRGRNRCRRCGRPRGVIRKFGLCRICFRELAHKGEIPGVKKAS 60 Query: 101 W 101 W Sbjct: 61 W 61 >gnl|CDD|36857 KOG1644, KOG1644, KOG1644, U2-associated snRNP A' protein [RNA processing and modification]. Length = 233 Score = 24.5 bits (53), Expect = 7.1 Identities = 11/39 (28%), Positives = 17/39 (43%), Gaps = 1/39 (2%) Query: 15 RVVAKQASKRLALKK-IVMDKSVTLEERFDAMLQLGSLP 52 VV R +K+ I S+ R + +LQ G +P Sbjct: 194 SVVTPTPEDREKIKEAIKNASSLAEINRLEQLLQSGQIP 232 >gnl|CDD|32980 COG3167, PilO, Tfp pilus assembly protein PilO [Cell motility and secretion / Intracellular trafficking and secretion]. Length = 211 Score = 24.2 bits (52), Expect = 8.7 Identities = 13/54 (24%), Positives = 28/54 (51%), Gaps = 2/54 (3%) Query: 1 MAKVSAVERNKRRLRVVAKQASKRLALKKIVMDKSVTLEERFDAMLQLGSLPRD 54 + ++ +E + L+ +Q + + A + + + +EERFD +L+ LP D Sbjct: 48 LEELEELEAEEEELKSTYQQKAIQAANLEALRAQLAEMEERFDILLR--QLPSD 99 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.323 0.136 0.377 Gapped Lambda K H 0.267 0.0571 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 1,143,331 Number of extensions: 53257 Number of successful extensions: 128 Number of sequences better than 10.0: 1 Number of HSP's gapped: 127 Number of HSP's successfully gapped: 12 Length of query: 101 Length of database: 6,263,737 Length adjustment: 68 Effective length of query: 33 Effective length of database: 4,794,325 Effective search space: 158212725 Effective search space used: 158212725 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 51 (23.8 bits)