RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780248|ref|YP_003064661.1| 30S ribosomal protein S14
[Candidatus Liberibacter asiaticus str. psy62]
         (101 letters)



>3bbn_N Ribosomal protein S14; small ribosomal subunit, spinach
           chloroplast ribosome, ribonucleoprotein particle,
           macromolecular complex; 9.40A {Spinacea oleracea} (N:)
          Length = 100

 Score =  105 bits (264), Expect = 2e-24
 Identities = 33/101 (32%), Positives = 56/101 (55%), Gaps = 1/101 (0%)

Query: 1   MAKVSAVERNKRRLRVVAKQASKRLALKKIVMDKSVTLEERFDAMLQLGSLPRDGSRVRV 60
           MA+ S ++R K+R  +  K    R + K+ +   + +L ++++   +L S PR+ +  R+
Sbjct: 1   MARKSLIQREKKRRNLEQKYHLIRRSSKQEIRKVT-SLSDKWEIHGKLQSPPRNSAPARL 59

Query: 61  RNRCEISGRSRGVYRDFRLSRLALRELGGVGKIPGIIKSSW 101
             RC ++GR R   RDF LS   LRE+     +PG  +SSW
Sbjct: 60  HRRCFLTGRPRANIRDFGLSGHILREMVHTCLLPGATRSSW 100


>3i1m_N 30S ribosomal protein S14; ribosome structure, protein-RNA
           complex, ribonucleoprotein, ribosomal protein,
           RNA-binding, rRNA-binding, antibiotic resistance; 3.19A
           {Escherichia coli k-12} PDB: 1vs7_N* 3e1a_G 3e1c_G
           1vs5_N 3i1o_N 3i1q_N 3i1s_N 3i1z_N 3i21_N 2qal_N* 1p6g_N
           1p87_N 2aw7_N 2avy_N 2i2u_N 2i2p_N* 2qan_N* 2qb9_N*
           2qbb_N* 2qbd_N ... (N:46-101)
          Length = 56

 Score = 77.7 bits (192), Expect = 6e-16
 Identities = 29/56 (51%), Positives = 37/56 (66%)

Query: 46  LQLGSLPRDGSRVRVRNRCEISGRSRGVYRDFRLSRLALRELGGVGKIPGIIKSSW 101
           L+L +LPRD S  R RNRC  +GR  G  R F LSR+ +RE    G+IPG+ K+SW
Sbjct: 1   LKLQTLPRDSSPSRQRNRCRQTGRPHGFLRKFGLSRIKVREAAMRGEIPGLKKASW 56


>2vqe_N 30S ribosomal protein S14 type Z; tRNA-binding,
           rRNA-binding, metal-binding, zinc-finger, translation;
           HET: TM2 PAR; 2.5A {Thermus thermophilus} (N:)
          Length = 61

 Score = 73.5 bits (181), Expect = 1e-14
 Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 2/61 (3%)

Query: 41  RFDAMLQLGSLPRDGSRVRVRNRCEISGRSRGVYRDFRLSRLALRELGGVGKIPGIIKSS 100
           R   + +    P+   +VR   RC   GR+R VYR F L R+ LREL   G++PG+ K+S
Sbjct: 3   RKALIEKAKRTPKF--KVRAYTRCVRCGRARSVYRFFGLCRICLRELAHKGQLPGVRKAS 60

Query: 101 W 101
           W
Sbjct: 61  W 61


>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode,
          hydride transfer mechanism, GR2-family, flavoenzyme,
          FAD containing; HET: FAD; 1.25A {Rhodococcus opacus}
          PDB: 2jb1_A* 2jb2_A* 2jb3_A*
          (A:1-46,A:238-314,A:434-489)
          Length = 179

 Score = 25.7 bits (56), Expect = 2.5
 Identities = 9/36 (25%), Positives = 14/36 (38%)

Query: 2  AKVSAVERNKRRLRVVAKQASKRLALKKIVMDKSVT 37
           KV+ +E   R +  +      R+    IV    VT
Sbjct: 35 YKVTVLEARTRPMDRIYYAFQDRIGTDNIVFGAEVT 70


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.323    0.136    0.377 

Gapped
Lambda     K      H
   0.267   0.0747    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 752,398
Number of extensions: 30887
Number of successful extensions: 89
Number of sequences better than 10.0: 1
Number of HSP's gapped: 87
Number of HSP's successfully gapped: 7
Length of query: 101
Length of database: 4,956,049
Length adjustment: 59
Effective length of query: 42
Effective length of database: 2,961,554
Effective search space: 124385268
Effective search space used: 124385268
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.0 bits)