RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780248|ref|YP_003064661.1| 30S ribosomal protein S14
[Candidatus Liberibacter asiaticus str. psy62]
         (101 letters)



>d2qaln1 g.39.1.7 (N:1-100) Ribosomal protein S14 {Escherichia coli
           [TaxId: 562]}
          Length = 100

 Score =  108 bits (271), Expect = 2e-25
 Identities = 44/100 (44%), Positives = 63/100 (63%)

Query: 2   AKVSAVERNKRRLRVVAKQASKRLALKKIVMDKSVTLEERFDAMLQLGSLPRDGSRVRVR 61
           AK S   R  +R+ +  K  +KR  LK I+ D + + E+R++A+L+L +LPRD S  R R
Sbjct: 1   AKQSMKAREVKRVALADKYFAKRAELKAIISDVNASDEDRWNAVLKLQTLPRDSSPSRQR 60

Query: 62  NRCEISGRSRGVYRDFRLSRLALRELGGVGKIPGIIKSSW 101
           NRC  +GR  G  R F LSR+ +RE    G+IPG+ K+SW
Sbjct: 61  NRCRQTGRPHGFLRKFGLSRIKVREAAMRGEIPGLKKASW 100


>d2uubn1 g.39.1.7 (N:2-61) Ribosomal protein S14 {Thermus
           thermophilus [TaxId: 274]}
          Length = 60

 Score = 66.2 bits (162), Expect = 7e-13
 Identities = 23/46 (50%), Positives = 30/46 (65%)

Query: 56  SRVRVRNRCEISGRSRGVYRDFRLSRLALRELGGVGKIPGIIKSSW 101
            +VR   RC   GR+R VYR F L R+ LREL   G++PG+ K+SW
Sbjct: 15  FKVRAYTRCVRCGRARSVYRFFGLCRICLRELAHKGQLPGVRKASW 60


>d1hyoa2 d.177.1.1 (A:119-416) Fumarylacetoacetate hydrolase, FAH,
           C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 298

 Score = 23.5 bits (50), Expect = 5.5
 Identities = 6/20 (30%), Positives = 8/20 (40%)

Query: 53  RDGSRVRVRNRCEISGRSRG 72
            DG  V +   C+  G   G
Sbjct: 267 LDGDEVIITGHCQGDGYRVG 286


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.136    0.377 

Gapped
Lambda     K      H
   0.267   0.0715    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 369,430
Number of extensions: 15962
Number of successful extensions: 36
Number of sequences better than 10.0: 1
Number of HSP's gapped: 36
Number of HSP's successfully gapped: 7
Length of query: 101
Length of database: 2,407,596
Length adjustment: 62
Effective length of query: 39
Effective length of database: 1,556,336
Effective search space: 60697104
Effective search space used: 60697104
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (21.9 bits)