Query gi|254780249|ref|YP_003064662.1| 50S ribosomal protein L5 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 185 No_of_seqs 126 out of 1598 Neff 5.7 Searched_HMMs 33803 Date Tue May 24 06:19:05 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780249.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >1mji_A 50S ribosomal protein 100.0 0 0 460.3 20.1 182 4-185 1-182 (182) 2 >1iq4_A 50S ribosomal protein 100.0 0 0 454.5 20.8 179 7-185 1-179 (179) 3 >3i1n_F 50S ribosomal protein 100.0 0 0 455.3 18.9 179 7-185 1-179 (179) 4 >3bbo_H Ribosomal protein L5; 100.0 0 0 458.7 12.4 184 2-185 11-194 (220) 5 >1vq8_D 50S ribosomal protein 100.0 0 0 377.4 5.9 156 19-185 1-156 (177) 6 >2noq_H 60S ribosomal protein 100.0 0 0 347.9 -12.6 146 30-185 1-146 (165) 7 >2rf4_B DNA-directed RNA polym 44.8 15 0.00043 17.6 2.2 42 86-127 15-78 (87) 8 >1vly_A SPOT PR51, unknown pro 42.9 10 0.00029 18.6 1.2 79 93-184 3-81 (88) 9 >3gir_A Aminomethyltransferase 38.7 12 0.00035 18.1 1.0 78 93-183 3-81 (89) 10 >1wsr_A Aminomethyltransferase 31.3 15 0.00043 17.6 0.5 69 93-174 3-72 (94) 11 >1yx2_A Aminomethyltransferase 28.9 22 0.00066 16.5 1.1 27 93-119 2-28 (88) 12 >1vlo_A Aminomethyltransferase 28.9 25 0.00075 16.2 1.4 75 93-179 3-78 (90) 13 >1qys_A TOP7; alpha-beta, nove 26.6 46 0.0013 14.7 3.1 19 159-177 47-65 (106) 14 >2jvf_A De novo protein M7; te 26.6 46 0.0014 14.7 3.1 21 158-178 48-68 (96) 15 >2gag_A Heterotetrameric sarco 24.8 25 0.00073 16.3 0.7 39 93-141 2-40 (93) 16 >1wos_A Aminomethyltransferase 24.8 22 0.00066 16.5 0.5 77 93-182 3-80 (90) 17 >1mio_A Nitrogenase molybdenum 21.2 30 0.00088 15.8 0.5 49 136-184 53-103 (107) 18 >1v5v_A Aminomethyltransferase 20.8 28 0.00084 15.9 0.4 71 93-176 2-73 (95) 19 >2wl2_A GYRA, DNA gyrase subun 20.4 39 0.0012 15.1 1.0 22 101-128 24-45 (64) No 1 >>1mji_A 50S ribosomal protein L5; ribosomal protein - 5S rRNA complex, ribosome; 2.50A {Thermus thermophilus} (A:) Probab=100.00 E-value=0 Score=460.34 Aligned_cols=182 Identities=52% Similarity=0.941 Sum_probs=180.3 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCCCHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCC Q ss_conf 87561189999999999999982699822286044999974578756537899999998776538961354123764211 Q gi|254780249|r 4 CKYEPRLKKEYCLRIREAMQQEFSYKNVMQIPKIEKVVVNMGVGESIADSKKAESAAADLALITGQKPVITRARRSIAGF 83 (185) Q Consensus 4 ~~~~pRLk~~Y~~~i~~dL~~k~~~~N~~~vPki~KIvin~gvg~a~~dkk~l~~~~~~L~~ITGqkP~~~~aKksi~~f 83 (185) +.|+|||+.||+++|++||+++++|+|+|++|+|+||+||+|+|+++.|++.++.+..+|+.||||+|++++||+||++| T Consensus 1 m~~m~~l~~~Y~~~v~~dL~~k~~~~N~~~~Pki~KIvi~~g~g~~~~d~k~l~~~~~~L~~ItGQkp~~t~aKksi~~F 80 (182) T 1mji_A 1 MPLDVALKRKYYEEVRPELIRRFGYQNVWEVPRLEKVVINQGLGEAKEDARILEKAAQELALITGQKPAVTRAKKSISNF 80 (182) T ss_dssp --CCCHHHHHHHHTHHHHHHHHSCCSSGGGSCCEEEEEEEEECTTTCCCHHHHHHHHHHHHHHHTSCCEEEECCSCCCCS T ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCHHHCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCC T ss_conf 99566899999999989999985899940056566999978888200066899999998987538735787615555552 Q ss_pred CCCCCCEEEEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCEECCCCCCCCCCCCCCCEEEEE Q ss_conf 15589862889996034289999999998767752046887110157773143301110068754014688554359998 Q gi|254780249|r 84 KLRTGMPIGTKVTLRGTNMYDFLDRLINMGMPRIRDFHGLNSRSFDGSGNFSFGIREHIVFPEINYDKVDCVLGMDISIC 163 (185) Q Consensus 84 kiRkG~piG~kvTLRg~~my~FL~kli~~vlPrikdf~g~~~~~~d~~Gn~sfGi~e~~~FPEi~yd~~~~~~G~~Iti~ 163 (185) |+|||+|+||+|||||++||+||+||+++|+||+|||+|++.++||++|||+||++|+++|||++||++++++||||+|+ T Consensus 81 kirkg~piG~kVTLRg~~my~FL~kli~~vlPrirdf~g~~~~sfd~~gn~sfGi~e~~~FPEi~yd~~~~i~G~~Itiv 160 (182) T 1mji_A 81 KLRKGMPIGLRVTLRRDRXWIFLEKLLNVALPRIRDFRGLNPNSFDGRGNYNLGLREQLIFPEITYDMVDALRGXDIAVV 160 (182) T ss_dssp SSSCCSEEEEEEEECHHHHHHHHHHHHHTTTTTCSSCCCBCTTCBCSSSEEEEEECSCEECSSCEECCTTTSCCEEEEEE T ss_pred EECCCCCEEEEEEECHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECHHHEEECCCCCCCCCCCCCCCEEEEE T ss_conf 01179801699994588999999999997630111002355301147714753522504677613266689786269999 Q ss_pred CCCCCHHHHHHHHHHHCCCCCC Q ss_conf 0448968999999980898689 Q gi|254780249|r 164 TTTRSDREAKYLLTLFGFPFPK 185 (185) Q Consensus 164 Tta~~~~ea~~Lls~~g~Pf~k 185 (185) |+|++++|++.||+++||||+| T Consensus 161 t~a~~~~~~~~ll~~~~~Pf~k 182 (182) T 1mji_A 161 TTAETDEEARALLELLGFPFRK 182 (182) T ss_dssp ESCSSHHHHHHHHHHHTCCBCC T ss_pred ECCCCHHHHHHHHHHCCCCCCC T ss_conf 3769979999999985997459 No 2 >>1iq4_A 50S ribosomal protein L5; rRNA-binding, RNP motif, RNA binding protein; 1.80A {Geobacillus stearothermophilus} (A:) Probab=100.00 E-value=0 Score=454.50 Aligned_cols=179 Identities=56% Similarity=1.023 Sum_probs=177.7 Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCCHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCC Q ss_conf 61189999999999999982699822286044999974578756537899999998776538961354123764211155 Q gi|254780249|r 7 EPRLKKEYCLRIREAMQQEFSYKNVMQIPKIEKVVVNMGVGESIADSKKAESAAADLALITGQKPVITRARRSIAGFKLR 86 (185) Q Consensus 7 ~pRLk~~Y~~~i~~dL~~k~~~~N~~~vPki~KIvin~gvg~a~~dkk~l~~~~~~L~~ITGqkP~~~~aKksi~~fkiR 86 (185) +|||+.||+++|++||+++++|+|+|++|+|+||+||+|+|++++|++.++.+..+|+.||||+|++++||+|||+||+| T Consensus 1 m~~l~~~Y~~~i~~dL~~k~~~~n~~~iP~i~KIvin~gvg~~~~~~~~l~~~~~~L~~ItGQkp~~t~akksia~fkir 80 (179) T 1iq4_A 1 MNRLKEKYLNEVVPALMSKFNYKSIMQVPKIEKIVINMGVGDAVQNPKALDSAVEELTLIAGQRPVVTRAKKSIAGFRLR 80 (179) T ss_dssp CCHHHHHHHHTHHHHHHHHHCCSSGGGSCCEEEEEEEEECSCSSSCHHHHHHHHHHHHHHHSSCCEEEECCSCSCSSSCC T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCHHCCEEEEEEEECCCCCHHHCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCC T ss_conf 91789999999999999986899810056145999978887133262789999999998628863156647552222102 Q ss_pred CCCEEEEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCEECCCCCCCCCCCCCCCEEEEECCC Q ss_conf 89862889996034289999999998767752046887110157773143301110068754014688554359998044 Q gi|254780249|r 87 TGMPIGTKVTLRGTNMYDFLDRLINMGMPRIRDFHGLNSRSFDGSGNFSFGIREHIVFPEINYDKVDCVLGMDISICTTT 166 (185) Q Consensus 87 kG~piG~kvTLRg~~my~FL~kli~~vlPrikdf~g~~~~~~d~~Gn~sfGi~e~~~FPEi~yd~~~~~~G~~Iti~Tta 166 (185) ||+|+||+|||||++||+||+||+++||||+|||+|++.++||++|||+||++|+++|||++||++++++||||||||+| T Consensus 81 kg~~iG~kvTLRg~~my~FL~kli~~vlPrirdf~g~~~~~fd~~gn~sfGi~~~~~FPEi~~d~~~~i~G~~itivt~a 160 (179) T 1iq4_A 81 QGMPIGAKVTLRGERMYEFLDKLISVSLPRARDFRGVSKKSFDGRGNYTLGIKEQLIFPEIDYDKVNKVRGMDIVIVTTA 160 (179) T ss_dssp TTCEEEEEEEECHHHHHHHHHHHHHTTGGGSTTCCCBCSSCBCSSSEEEEEESCGGGSTTCCGGGSSCCCCEEEEEEESC T ss_pred CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCEEEEEECC T ss_conf 79855899983423299999999997545654302685331178885150501301167744366689887659999466 Q ss_pred CCHHHHHHHHHHHCCCCCC Q ss_conf 8968999999980898689 Q gi|254780249|r 167 RSDREAKYLLTLFGFPFPK 185 (185) Q Consensus 167 ~~~~ea~~Lls~~g~Pf~k 185 (185) ++++||+.||++|||||+| T Consensus 161 ~~~~~~~~lls~~~~Pf~k 179 (179) T 1iq4_A 161 NTDEEARELLALLGMPFQK 179 (179) T ss_dssp SSHHHHHHHHHHHTCCBCC T ss_pred CCHHHHHHHHHHCCCCCCC T ss_conf 9979999999985998369 No 3 >>3i1n_F 50S ribosomal protein L5; ribosome structure, protein-RNA complex, acetylation, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA- binding, methylation; 3.19A {Escherichia coli k-12} PDB: 1vs8_F 1vs6_F 3i1p_F 3i1r_F 3i1t_F 3i20_F 3i22_F 2qam_F* 1p85_D 1p86_D 2awb_F 2aw4_F 2i2v_F 2j28_F 2i2t_F* 2qao_F* 2qba_F* 2qbc_F* 2qbe_F 2qbg_F ... (F:) Probab=100.00 E-value=0 Score=455.29 Aligned_cols=179 Identities=57% Similarity=1.005 Sum_probs=177.7 Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCCHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCC Q ss_conf 61189999999999999982699822286044999974578756537899999998776538961354123764211155 Q gi|254780249|r 7 EPRLKKEYCLRIREAMQQEFSYKNVMQIPKIEKVVVNMGVGESIADSKKAESAAADLALITGQKPVITRARRSIAGFKLR 86 (185) Q Consensus 7 ~pRLk~~Y~~~i~~dL~~k~~~~N~~~vPki~KIvin~gvg~a~~dkk~l~~~~~~L~~ITGqkP~~~~aKksi~~fkiR 86 (185) +|||++||+++|++||+++++|+|+|++|+|+||+||+|+|++++|++.++.+..+|+.||||+|++++||+|||+||+| T Consensus 1 m~~l~~~Y~~~i~~~l~~k~~~~n~~~~Pkl~KIvin~g~g~a~~~~~~l~~~~~~L~~ItGQkp~~~~aKksia~fkiR 80 (179) T 3i1n_F 1 MAKLHDYYKDEVVKKLMTEFNYNSVMQVPRVEKITLNMGVGEAIADKKLLDNAAADLAAISGQKPLITKARKSVAGFKIR 80 (179) T ss_dssp -CTHHHHHTTTTHHHHHHHHTCSSGGGSCCEEEEEEECCCSCTTTCHHHHHHHHHHHHHHSSSCCEEEECSSCBGGGTBC T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCHHCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCC T ss_conf 90789999999999999975899800166467999965787434561888999999987630535886426533344434 Q ss_pred CCCEEEEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCEECCCCCCCCCCCCCCCEEEEECCC Q ss_conf 89862889996034289999999998767752046887110157773143301110068754014688554359998044 Q gi|254780249|r 87 TGMPIGTKVTLRGTNMYDFLDRLINMGMPRIRDFHGLNSRSFDGSGNFSFGIREHIVFPEINYDKVDCVLGMDISICTTT 166 (185) Q Consensus 87 kG~piG~kvTLRg~~my~FL~kli~~vlPrikdf~g~~~~~~d~~Gn~sfGi~e~~~FPEi~yd~~~~~~G~~Iti~Tta 166 (185) ||+|+||||||||++||+||+||+++||||||||+|++.++||++|||+||++|+++||||+||.+++++||||+|||+| T Consensus 81 kg~~iG~kvTLRg~~m~~FL~kli~~vlPrirdf~g~~~~~fd~~gn~sfGi~~~~~FPEi~~d~~~~~~G~~itivt~a 160 (179) T 3i1n_F 81 QGYPIGCKVTLRGERMWEFFERLITIAVPRIRDFRGLSAKSFDGRGNYSMGVREQIIFPEIDYDKVDRVRGLDITITTTA 160 (179) T ss_dssp TTCEEEEEEEECHHHHHHHHHHHHHTTGGGSSSCCCCCSCCCCSSSBCCEECSSCCSSTTSCGGGCCCCCCCEEEEEESC T ss_pred CCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCCEEEECHHHHHHCCCCCCCCCCCCCCCEEEEEECC T ss_conf 89815899851325679999999998756540135788411155646884307864254345565578687359999625 Q ss_pred CCHHHHHHHHHHHCCCCCC Q ss_conf 8968999999980898689 Q gi|254780249|r 167 RSDREAKYLLTLFGFPFPK 185 (185) Q Consensus 167 ~~~~ea~~Lls~~g~Pf~k 185 (185) ++++||+.||+++||||+| T Consensus 161 ~~~~~a~~ll~~~~~Pf~k 179 (179) T 3i1n_F 161 KSDEEGRALLAAFDFPFRK 179 (179) T ss_dssp SSHHHHHHHHHHSCCCCC- T ss_pred CCHHHHHHHHHHCCCCCCC T ss_conf 9989999999984998479 No 4 >>3bbo_H Ribosomal protein L5; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} (H:) Probab=100.00 E-value=0 Score=458.67 Aligned_cols=184 Identities=50% Similarity=0.874 Sum_probs=181.7 Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCC Q ss_conf 98875611899999999999999826998222860449999745787565378999999987765389613541237642 Q gi|254780249|r 2 VDCKYEPRLKKEYCLRIREAMQQEFSYKNVMQIPKIEKVVVNMGVGESIADSKKAESAAADLALITGQKPVITRARRSIA 81 (185) Q Consensus 2 ~~~~~~pRLk~~Y~~~i~~dL~~k~~~~N~~~vPki~KIvin~gvg~a~~dkk~l~~~~~~L~~ITGqkP~~~~aKksi~ 81 (185) ++++|+|||+.||+++|++||+++++|+|+|++|+|+||+||+|+|++++|++.++.+..+|+.||||+|++++||+||+ T Consensus 11 ~~~~~m~~l~~~Y~~~v~~dL~~k~~~~N~m~vPki~KIvin~gvg~~~~d~k~l~~a~~~L~~ITGQkP~~t~AKksia 90 (220) T 3bbo_H 11 AEAETINRLKTNYIEKMVPLLKEEFSYSNILEVPKVVKIVVNCGIGDASQNAKGLDAAINELALITGQRPVKTKAKTSIA 90 (220) T ss_dssp -------CHHHHHTTTHHHHHHHSSCCCCSSSSCCEEEEECCCCCCCSSCCHHHHHHHHHHHHHHTCSCCCCCBCCSCCC T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCHHCCHHHHHHHHHHHHHHHHCEEECCCCCCCCC T ss_conf 55456689999999999999999848998511671569998678881220657899999998877525100034545531 Q ss_pred CCCCCCCCEEEEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCEECCCCCCCCCCCCCCCEEE Q ss_conf 11155898628899960342899999999987677520468871101577731433011100687540146885543599 Q gi|254780249|r 82 GFKLRTGMPIGTKVTLRGTNMYDFLDRLINMGMPRIRDFHGLNSRSFDGSGNFSFGIREHIVFPEINYDKVDCVLGMDIS 161 (185) Q Consensus 82 ~fkiRkG~piG~kvTLRg~~my~FL~kli~~vlPrikdf~g~~~~~~d~~Gn~sfGi~e~~~FPEi~yd~~~~~~G~~It 161 (185) +||+|||+|+||||||||++||+||+||+++||||||||+|++.++||++|||+||++|+++|||++||.+++++||||+ T Consensus 91 ~FkiRkg~piG~kvTLRg~~my~FL~kli~~vlPrirdf~gi~~~sfd~~gN~sfGi~e~~~FPEi~~d~~~~i~G~~It 170 (220) T 3bbo_H 91 GFKVREGMTLGIAVTLRGNLMYSFLDRLINLALPRTRDFQGVNPNSFDGHGNYSVGFREQSVFPEIKPEIVGKARGMDVC 170 (220) T ss_dssp SSCCCTTCBCCCCCEECTHHHHHHHHHHHHSSTTTSSSCCCCCCSCCCSSSEEEEEECSCCCCSSCCTTSCSSCCCEEEE T ss_pred CCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCHHHHHCCCCCCCCCCCCCCCEEE T ss_conf 11324898226899975544999999999999987541135686312467714544035430888774224673660289 Q ss_pred EECCCCCHHHHHHHHHHHCCCCCC Q ss_conf 980448968999999980898689 Q gi|254780249|r 162 ICTTTRSDREAKYLLTLFGFPFPK 185 (185) Q Consensus 162 i~Tta~~~~ea~~Lls~~g~Pf~k 185 (185) |||+|++++|+++|||+|||||.+ T Consensus 171 ivtta~t~~~a~~Lls~~g~Pf~~ 194 (220) T 3bbo_H 171 ITTTAKTDKEAYKLLSLMGMPFRE 194 (220) T ss_dssp EEESCSSGGGTHHHHHTTTCCC-- T ss_pred EEECCCCHHHHHHHHHHCCCCCCC T ss_conf 995259979999999986998626 No 5 >>1vq8_D 50S ribosomal protein L5P; ribosome 50S, protein-protein complex, RNA-RNA complex, protein-RNA complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} (D:) Probab=100.00 E-value=0 Score=377.42 Aligned_cols=156 Identities=35% Similarity=0.517 Sum_probs=151.1 Q ss_pred HHHHHHHHCCCCHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCEEEEEEEEE Q ss_conf 99999982699822286044999974578756537899999998776538961354123764211155898628899960 Q gi|254780249|r 19 REAMQQEFSYKNVMQIPKIEKVVVNMGVGESIADSKKAESAAADLALITGQKPVITRARRSIAGFKLRTGMPIGTKVTLR 98 (185) Q Consensus 19 ~~dL~~k~~~~N~~~vPki~KIvin~gvg~a~~dkk~l~~~~~~L~~ITGqkP~~~~aKksi~~fkiRkG~piG~kvTLR 98 (185) .+||+++++|+|+|++|+|+|||||+|+|++++ .++.+..+|+.||||+|+.++||+||++||+|+|+|+||+|||| T Consensus 1 ~~~L~~k~~~~N~m~vP~i~KIvin~gvg~~~~---~l~~a~~~L~~ITGQkP~~t~AKksi~~fkiRkg~piG~kvTLR 77 (177) T 1vq8_D 1 MSSESESGGDFHEMREPRIEKVVVHMGIGHGGR---DLANAEDILGEITGQMPVRTKAKRTVGEFDIREGDPIGAKVTLR 77 (177) T ss_dssp ----------CCTTTSCEEEEEEEEEECCC--------CTTHHHHHHHTSSCCEEEECCSCBTTTBCCSSSEEEEEEEEC T ss_pred CCCHHHHCCCCCCCCCCEEEEEEEECCCCHHHH---HHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCEEEEEEEEC T ss_conf 942112107888856846779999758773356---08999999999729963034443455652021697178999975 Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCEECCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHH Q ss_conf 34289999999998767752046887110157773143301110068754014688554359998044896899999998 Q gi|254780249|r 99 GTNMYDFLDRLINMGMPRIRDFHGLNSRSFDGSGNFSFGIREHIVFPEINYDKVDCVLGMDISICTTTRSDREAKYLLTL 178 (185) Q Consensus 99 g~~my~FL~kli~~vlPrikdf~g~~~~~~d~~Gn~sfGi~e~~~FPEi~yd~~~~~~G~~Iti~Tta~~~~ea~~Lls~ 178 (185) |++||+||+||+++|+||+| +||+.|||+||++|+++|||++||++++++||||||+|+|+++++|+.||++ T Consensus 78 G~~my~FL~kli~~v~p~ir--------~Fd~~gN~sfGi~e~~~FPei~~d~~~~i~G~~itivt~a~~~~~a~~lls~ 149 (177) T 1vq8_D 78 DEMAEEFLQTALPLAELATS--------QFDDTGNFSFGVEEHTEFPSQEYDPSIGIYGLDVTVNLVRPGYRVAKRDKAS 149 (177) T ss_dssp THHHHHHHHHHGGGSCCCGG--------GBCSSSCEEEC--------------------CEEEEEEECGGGGGGTSSTTC T ss_pred CHHHHHHHHHHHCCCCCCCC--------CCCCCEEEEECCHHHEECCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHH T ss_conf 56599999998442657743--------4489606886725751555342024466403259999568872899999987 Q ss_pred HCCCCCC Q ss_conf 0898689 Q gi|254780249|r 179 FGFPFPK 185 (185) Q Consensus 179 ~g~Pf~k 185 (185) +||||++ T Consensus 150 ~~iPf~~ 156 (177) T 1vq8_D 150 RSIPTKH 156 (177) T ss_dssp CCCCGGG T ss_pred HCCCCCC T ss_conf 1698546 No 6 >>2noq_H 60S ribosomal protein L11-B; IRES RNA, ribosome, translation, internal initiation; 7.30A {Saccharomyces cerevisiae} PDB: 1s1i_J 2zkr_d (H:) Probab=100.00 E-value=0 Score=347.87 Aligned_cols=146 Identities=34% Similarity=0.482 Sum_probs=140.6 Q ss_pred CHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCEEEEEEEEECCHHHHHHHHH Q ss_conf 82228604499997457875653789999999877653896135412376421115589862889996034289999999 Q gi|254780249|r 30 NVMQIPKIEKVVVNMGVGESIADSKKAESAAADLALITGQKPVITRARRSIAGFKLRTGMPIGTKVTLRGTNMYDFLDRL 109 (185) Q Consensus 30 N~~~vPki~KIvin~gvg~a~~dkk~l~~~~~~L~~ITGqkP~~~~aKksi~~fkiRkG~piG~kvTLRg~~my~FL~kl 109 (185) |+|++|+|+||+||+|+|++++ .++.+..+|+.||||+|++++||+++++||+|||+|+||||||||++||+||+|| T Consensus 1 N~m~vP~i~KIvin~gv~~a~~---~l~~a~~~Le~ITGQkp~~~~aKksi~~fkiRkg~piG~kVTLRg~~my~FL~kl 77 (165) T 2noq_H 1 NPMRDLKIEKLVLNISVGESGD---RLTRASKVLEQLSGQTPVQSKARYTVRTFGIRRNEKIAVHVTVRGPKAEEILERG 77 (165) T ss_dssp CTTTSCEEECCCCCCCSSCSSS---SSSCSSSTTSSSSSCCCCCCCCCCCCSSSCCCSSCCCCCCCCCCSSSSSSSSSSS T ss_pred CCCCCCEEEEEEEECCCCHHHH---HHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCCCCEEEEEEECCHHHHHHHHHH T ss_conf 9977747669999778464277---7999999999964997570116655324000356625789886565788999998 Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCEECCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCC Q ss_conf 9987677520468871101577731433011100687540146885543599980448968999999980898689 Q gi|254780249|r 110 INMGMPRIRDFHGLNSRSFDGSGNFSFGIREHIVFPEINYDKVDCVLGMDISICTTTRSDREAKYLLTLFGFPFPK 185 (185) Q Consensus 110 i~~vlPrikdf~g~~~~~~d~~Gn~sfGi~e~~~FPEi~yd~~~~~~G~~Iti~Tta~~~~ea~~Lls~~g~Pf~k 185 (185) +++|+||+|| .+||..||++|||+|+. +||++||++++++||||||+|+|++++|++.||+++|+||++ T Consensus 78 i~~v~prir~------~~fd~~gn~sfGi~~~~-e~e~~~d~~~~i~G~~itivt~a~~~~~~~~lls~~~iPf~~ 146 (165) T 2noq_H 78 LKVKEYQLRD------RNFSATGNFGFGIDEHI-DLGIKYDPSIGIFGMDFYVVMNRPGARVTRRKRCKGTVGNSH 146 (165) T ss_dssp SSSSCTTCSS------TTSCTTSCCCCCCCCSC-CCSSSSCCCCCCSTTTCCCEEECSSCSTTTSSSSCCCCCSSS T ss_pred HHCCCCCCCC------CCCCCCCEEEECCHHHC-CCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHCCCCCCCC T ss_conf 7300544323------34168732664446651-455552665655320499997899714877655317788556 No 7 >>2rf4_B DNA-directed RNA polymerase I subunit RPA4; transferase DNA/RNA, DNA-binding, phosphorylation, POL I, POLI, rpoli, nuclear protein; 3.10A {Saccharomyces cerevisiae} (B:) Probab=44.82 E-value=15 Score=17.61 Aligned_cols=42 Identities=29% Similarity=0.555 Sum_probs=29.3 Q ss_pred CCCCEEEEEEE-----EECCHHHHHHHHHHHH-------------H---HHHH-HHCCCCCCCC Q ss_conf 58986288999-----6034289999999998-------------7---6775-2046887110 Q gi|254780249|r 86 RTGMPIGTKVT-----LRGTNMYDFLDRLINM-------------G---MPRI-RDFHGLNSRS 127 (185) Q Consensus 86 RkG~piG~kvT-----LRg~~my~FL~kli~~-------------v---lPri-kdf~g~~~~~ 127 (185) --+.|+-.+|+ +-++.|..||+++|.. + |-|| |||||+++.. T Consensus 15 alNtPvvi~v~g~~q~v~~~eae~~L~~FI~~~E~~~~~d~~~ss~LsQLKRiQRdlrGLPPl~ 78 (87) T 2rf4_B 15 TLNTPVVIHATQLPQHVSTDEVLQFLESFIDEKENIIDIDTNLSSSISQLKRIQRDFKGLPPAQ 78 (87) T ss_dssp -CCCCCEEEESSCCEECCHHHHHHHHHHHHHHHHSSSCCCTTHHHHHHHHHHHHHHHHHSCC-- T ss_pred CCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCC T ss_conf 4678867885057554599999999999987777653056304889999999986405899832 No 8 >>1vly_A SPOT PR51, unknown protein from 2D-PAGE; 1789265, B2898, unknown protein from 2D-PAGE (SPOT PR51), structural genomics, JCSG; HET: MSE; 1.30A {Escherichia coli} (A:38-125) Probab=42.92 E-value=10 Score=18.57 Aligned_cols=79 Identities=5% Similarity=-0.045 Sum_probs=49.2 Q ss_pred EEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCEECCCCCCCCCCCCCCCEEEEECCCCCHHHH Q ss_conf 89996034289999999998767752046887110157773143301110068754014688554359998044896899 Q gi|254780249|r 93 TKVTLRGTNMYDFLDRLINMGMPRIRDFHGLNSRSFDGSGNFSFGIREHIVFPEINYDKVDCVLGMDISICTTTRSDREA 172 (185) Q Consensus 93 ~kvTLRg~~my~FL~kli~~vlPrikdf~g~~~~~~d~~Gn~sfGi~e~~~FPEi~yd~~~~~~G~~Iti~Tta~~~~ea 172 (185) .++.+.|+.+-+||+++++--++++.+ +.+.|+.-+++.- .+..|.+.-..|=+.-+.+++...++. T Consensus 3 ~~i~v~G~Da~~fL~~l~t~di~~l~~----------g~~~~t~~ln~~G---~i~~d~~v~~~~e~~~l~~~~~~~~~~ 69 (88) T 1vly_A 3 ALATITGADSEKYXQGQVTADVSQXAE----------DQHLLAAHCDAKG---KXWSNLRLFRDGDGFAWIERRSVREPQ 69 (88) T ss_dssp EEEEEESTTHHHHHHTTBSSCGGGCCT----------TCEEEEEEECTTS---CEEEEEEEEEETTEEEEEEEHHHHHHH T ss_pred EEEEEECCCHHHHHHHHHHCCCCCCCC----------CCEEEEEEECCCC---CEEEEEEEEECCCCEEEEEECCCCHHH T ss_conf 699998889999961543207201699----------9789999987888---879989999828957998640000256 Q ss_pred HHHHHHHCCCCC Q ss_conf 999998089868 Q gi|254780249|r 173 KYLLTLFGFPFP 184 (185) Q Consensus 173 ~~Lls~~g~Pf~ 184 (185) ..-|..+.+++. T Consensus 70 ~~~l~~~~~~~~ 81 (88) T 1vly_A 70 LTELKKYAVFSK 81 (88) T ss_dssp HHHHHTTCSSSS T ss_pred HHHHHHHHCCCC T ss_conf 667665401443 No 9 >>3gir_A Aminomethyltransferase; glycine cleavage system, aminotransferase, structural genomics; 1.60A {Bartonella henselae} (A:83-171) Probab=38.73 E-value=12 Score=18.12 Aligned_cols=78 Identities=14% Similarity=0.184 Sum_probs=43.0 Q ss_pred EEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCEECCCCCCCCCCCCCC-CEEEEECCCCCHHH Q ss_conf 89996034289999999998767752046887110157773143301110068754014688554-35999804489689 Q gi|254780249|r 93 TKVTLRGTNMYDFLDRLINMGMPRIRDFHGLNSRSFDGSGNFSFGIREHIVFPEINYDKVDCVLG-MDISICTTTRSDRE 171 (185) Q Consensus 93 ~kvTLRg~~my~FL~kli~~vlPrikdf~g~~~~~~d~~Gn~sfGi~e~~~FPEi~yd~~~~~~G-~~Iti~Tta~~~~e 171 (185) .++.++|+.+-+||+.+++--++++++-+ +.|+.-+++.- -+.-|.+.-..| =.+-+++++...++ T Consensus 3 ~~i~v~G~Da~~fLq~l~t~di~~l~~g~----------~~~t~~ln~~G---~i~~d~~i~~~~ed~~~l~~~~~~~~~ 69 (89) T 3gir_A 3 KLIAVEGPKAVEFLSYALPVDAALLKIGQ----------SRYSYLLNERA---GILDDLILTRLAECRFMLVANAGNAQA 69 (89) T ss_dssp EEEEEESTTHHHHHHHHSSSCTTTSCTTB----------EEEEEEECTTC---CEEEEEEEEEEETTEEEEEECGGGHHH T ss_pred EEEEEECCCHHHHHHHHHHHCCCCCCCCC----------CCCEEEECCCC---CCEEEEEEEEECCCCCCCCCCCCCCCC T ss_conf 89999898999999877654633221024----------54125642777---623566887522664322232223210 Q ss_pred HHHHHHHHCCCC Q ss_conf 999999808986 Q gi|254780249|r 172 AKYLLTLFGFPF 183 (185) Q Consensus 172 a~~Lls~~g~Pf 183 (185) ...-|+.+.+++ T Consensus 70 ~~~~l~~~~~~~ 81 (89) T 3gir_A 70 DFAELEKRAFGF 81 (89) T ss_dssp HHHHHHHHTTTS T ss_pred HHHHCCCCCCCC T ss_conf 100001113565 No 10 >>1wsr_A Aminomethyltransferase; glycine-cleavage sytem; 2.00A {Homo sapiens} PDB: 1wsv_A* (A:55-148) Probab=31.29 E-value=15 Score=17.62 Aligned_cols=69 Identities=12% Similarity=0.132 Sum_probs=36.0 Q ss_pred EEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCEECCCCCCCCCCCCCCC-EEEEECCCCCHHH Q ss_conf 899960342899999999987677520468871101577731433011100687540146885543-5999804489689 Q gi|254780249|r 93 TKVTLRGTNMYDFLDRLINMGMPRIRDFHGLNSRSFDGSGNFSFGIREHIVFPEINYDKVDCVLGM-DISICTTTRSDRE 171 (185) Q Consensus 93 ~kvTLRg~~my~FL~kli~~vlPrikdf~g~~~~~~d~~Gn~sfGi~e~~~FPEi~yd~~~~~~G~-~Iti~Tta~~~~e 171 (185) .++.+.|+.+.+||+++++--++++.. +.+.|+.-+++.- .+..|...--.|= .+-+++++...++ T Consensus 3 g~i~v~G~da~~~L~~l~t~dv~~l~~----------g~~~yt~~l~~~G---~i~~d~~v~r~~e~~~~l~~~~~~~~~ 69 (94) T 1wsr_A 3 LQTKILGSDRVKLMESLVVGDIAELRP----------NQGTLSLFTNEAG---GILDDLIVTNTSEGHLYVVSNAGCWEK 69 (94) T ss_dssp EEEEEESTTHHHHHHHHBSSCCTTCCT----------TEEEEEEEECTTC---CEEEEEEEEECTTSSEEEEECGGGHHH T ss_pred EEEEEECCCHHHHHHHHHCCCHHHHCC----------CCCCCCCCCCCCC---CEEECCCCCCCCCEEEEEEEEHHHHHH T ss_conf 899998689999998871457355332----------4432122247888---767603220124302355520121122 Q ss_pred HHH Q ss_conf 999 Q gi|254780249|r 172 AKY 174 (185) Q Consensus 172 a~~ 174 (185) -.. T Consensus 70 ~~~ 72 (94) T 1wsr_A 70 DLA 72 (94) T ss_dssp HHH T ss_pred HHH T ss_conf 233 No 11 >>1yx2_A Aminomethyltransferase; glycine cleavage system T protein, alpha-beta, beta-barrel, structural genomics, PSI, protein structure initiative; 2.08A {Bacillus subtilis} (A:55-142) Probab=28.89 E-value=22 Score=16.52 Aligned_cols=27 Identities=22% Similarity=0.442 Sum_probs=20.7 Q ss_pred EEEEEECCHHHHHHHHHHHHHHHHHHH Q ss_conf 899960342899999999987677520 Q gi|254780249|r 93 TKVTLRGTNMYDFLDRLINMGMPRIRD 119 (185) Q Consensus 93 ~kvTLRg~~my~FL~kli~~vlPrikd 119 (185) -++.+.|+.+-+||+.+++--++++.. T Consensus 2 G~i~v~G~Da~~fL~~l~t~di~~l~~ 28 (88) T 1yx2_A 2 GEVEVSGNDSLSFLQRLXTNDVSALTP 28 (88) T ss_dssp EEEEEESTTHHHHHHHHBSSCGGGCCT T ss_pred EEEEEECCCHHHHHHHHCHHHEECCCC T ss_conf 899998799999998745111224676 No 12 >>1vlo_A Aminomethyltransferase; NP417381, tetrahydrofolate-dependent) of glycine cleavage system, structural genomics, JCSG; HET: MSE; 1.70A {Escherichia coli K12} (A:63-152) Probab=28.87 E-value=25 Score=16.22 Aligned_cols=75 Identities=16% Similarity=0.188 Sum_probs=40.1 Q ss_pred EEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCEECCCCCCCCCCCCCC-CEEEEECCCCCHHH Q ss_conf 89996034289999999998767752046887110157773143301110068754014688554-35999804489689 Q gi|254780249|r 93 TKVTLRGTNMYDFLDRLINMGMPRIRDFHGLNSRSFDGSGNFSFGIREHIVFPEINYDKVDCVLG-MDISICTTTRSDRE 171 (185) Q Consensus 93 ~kvTLRg~~my~FL~kli~~vlPrikdf~g~~~~~~d~~Gn~sfGi~e~~~FPEi~yd~~~~~~G-~~Iti~Tta~~~~e 171 (185) .++.++|+.+-+||+.+++--++++ . -++.+.|+.-+++.- .+..|.+.-..+ =.+-+++++...++ T Consensus 3 g~i~v~G~da~~fL~~~~t~di~~l------~---~~g~~~yt~~ln~~G---~i~~d~~i~~~~e~~~~l~~~~~~~~~ 70 (90) T 1vlo_A 3 TIVDLRGSRTREFLRYLLANDVAKL------T---KSGKALYSGXLNASG---GVIDDLIVYYFTEDFFRLVVNSATREK 70 (90) T ss_dssp EEEEEESTTHHHHHHHHBSSCGGGC------C---STTBEEEEEEECTTS---CEEEEEEEEEEETTEEEEEECGGGHHH T ss_pred EEEEEECCCHHHHHHHHHHHCCCCC------C---CCCCEEEHHHHCCCC---EEEEEECCCCCCCCCCEEEEECCHHHH T ss_conf 8999989989999998765212224------5---552103112423687---399850233234675314540014889 Q ss_pred HHHHHHHH Q ss_conf 99999980 Q gi|254780249|r 172 AKYLLTLF 179 (185) Q Consensus 172 a~~Lls~~ 179 (185) -..-|+.+ T Consensus 71 ~~~~l~~~ 78 (90) T 1vlo_A 71 DLSWITQH 78 (90) T ss_dssp HHHHHHHH T ss_pred HHHHHHHH T ss_conf 99988876 No 13 >>1qys_A TOP7; alpha-beta, novel fold, de novo protein; 2.50A {Computationally designed sequence} (A:) Probab=26.62 E-value=46 Score=14.72 Aligned_cols=19 Identities=26% Similarity=0.441 Sum_probs=7.7 Q ss_pred EEEEECCCCCHHHHHHHHH Q ss_conf 5999804489689999999 Q gi|254780249|r 159 DISICTTTRSDREAKYLLT 177 (185) Q Consensus 159 ~Iti~Tta~~~~ea~~Lls 177 (185) ++.|..||.++++|..|+. T Consensus 47 ~V~ItIsA~~~~qA~~~~~ 65 (106) T 1qys_A 47 RVRISITARTKKEAEKFAA 65 (106) T ss_dssp EEEEEEECSSHHHHHHHHH T ss_pred EEEEEEEECCHHHHHHHHH T ss_conf 5899999666788999999 No 14 >>2jvf_A De novo protein M7; tetrapeptide fragment-based protein design, artificial fold; NMR {Unidentified} (A:) Probab=26.58 E-value=46 Score=14.71 Aligned_cols=21 Identities=33% Similarity=0.504 Sum_probs=11.7 Q ss_pred CEEEEECCCCCHHHHHHHHHH Q ss_conf 359998044896899999998 Q gi|254780249|r 158 MDISICTTTRSDREAKYLLTL 178 (185) Q Consensus 158 ~~Iti~Tta~~~~ea~~Lls~ 178 (185) -++.|..||.++++|..|+.. T Consensus 48 r~V~ItIsA~~~~qA~~~~~l 68 (96) T 2jvf_A 48 RNVQITISAENDEQAKELLEL 68 (96) T ss_dssp SEEEEEEECSSHHHHHHHHHH T ss_pred CEEEEEEEECCHHHHHHHHHH T ss_conf 448999996566789999999 No 15 >>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate- methylating enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* (A:632-724) Probab=24.80 E-value=25 Score=16.28 Aligned_cols=39 Identities=23% Similarity=0.562 Sum_probs=26.0 Q ss_pred EEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCC Q ss_conf 8999603428999999999876775204688711015777314330111 Q gi|254780249|r 93 TKVTLRGTNMYDFLDRLINMGMPRIRDFHGLNSRSFDGSGNFSFGIREH 141 (185) Q Consensus 93 ~kvTLRg~~my~FL~kli~~vlPrikdf~g~~~~~~d~~Gn~sfGi~e~ 141 (185) .++-++|+.+-+||+.+++--++++ + ++.+.|+.-+++. T Consensus 2 g~i~v~G~da~~~L~~l~t~di~~l------~----~g~~~yt~~ln~~ 40 (93) T 2gag_A 2 GKIEIRGKDAAEFLNRIYTNGYTKL------K----VGMGRYGVMCKAD 40 (93) T ss_dssp EEEEEESTTHHHHHHHHBSSCCTTC------C----TTBEEEEEEECTT T ss_pred EEEEEECCCHHHHHHHHHHHCCCCC------C----CCCEEECCEECCC T ss_conf 8999983828999988766321358------9----8722001004489 No 16 >>1wos_A Aminomethyltransferase; T-protein; 1.84A {Thermotoga maritima} (A:50-139) Probab=24.78 E-value=22 Score=16.52 Aligned_cols=77 Identities=16% Similarity=0.149 Sum_probs=40.6 Q ss_pred EEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCEECCCCCCCCCCCCCC-CEEEEECCCCCHHH Q ss_conf 89996034289999999998767752046887110157773143301110068754014688554-35999804489689 Q gi|254780249|r 93 TKVTLRGTNMYDFLDRLINMGMPRIRDFHGLNSRSFDGSGNFSFGIREHIVFPEINYDKVDCVLG-MDISICTTTRSDRE 171 (185) Q Consensus 93 ~kvTLRg~~my~FL~kli~~vlPrikdf~g~~~~~~d~~Gn~sfGi~e~~~FPEi~yd~~~~~~G-~~Iti~Tta~~~~e 171 (185) .++.++|+.+.+||+.+++--++++.. +.+.|+.-+++.- -+..|.+.-..| =.+-+++++...++ T Consensus 3 ~~i~v~G~da~~~L~~~~t~dv~~l~~----------g~~~~~~~ln~~G---~i~~d~~v~~~~ed~~~l~~~~~~~~~ 69 (90) T 1wos_A 3 GEFLVKGPEAVSFIDFLITNDFSSLPD----------GKAIYSVMCNENG---GIIDDLVVYKVSPDEALMVVNAANIEK 69 (90) T ss_dssp EEEEEESTTHHHHHHHHBSSCCTTCCT----------TEEEEEEEECTTS---CEEEEEEEEEEETTEEEEEECGGGHHH T ss_pred EEEEEECCCHHHHHHHHHCCCCCCCCC----------CCCCCEEECCCCC---EEEEEECCCCCCCCCCCCCCCCCCHHH T ss_conf 899998799999998873578644653----------3322101026555---389840011111011002345442344 Q ss_pred HHHHHHHHCCC Q ss_conf 99999980898 Q gi|254780249|r 172 AKYLLTLFGFP 182 (185) Q Consensus 172 a~~Lls~~g~P 182 (185) -...|+.+.++ T Consensus 70 ~~~~l~~~~~~ 80 (90) T 1wos_A 70 DFNWIKSHSKN 80 (90) T ss_dssp HHHHHHTTCTT T ss_pred HHHHHHCCCCC T ss_conf 44431003333 No 17 >>1mio_A Nitrogenase molybdenum iron protein (alpha chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} (A:47-68,A:201-285) Probab=21.19 E-value=30 Score=15.81 Aligned_cols=49 Identities=20% Similarity=0.346 Sum_probs=37.9 Q ss_pred EEECCCEECCCC-CCCCCCCCCCCEEEEECCCC-CHHHHHHHHHHHCCCCC Q ss_conf 330111006875-40146885543599980448-96899999998089868 Q gi|254780249|r 136 FGIREHIVFPEI-NYDKVDCVLGMDISICTTTR-SDREAKYLLTLFGFPFP 184 (185) Q Consensus 136 fGi~e~~~FPEi-~yd~~~~~~G~~Iti~Tta~-~~~ea~~Lls~~g~Pf~ 184 (185) +|++-...||+= .+|.+.....-.++++.... ...-|+.|-+.||+||- T Consensus 53 ~Gi~vn~~~~~g~s~eel~~~~~A~lNIvl~~~~g~~~A~~Lee~fGiPyi 103 (107) T 1mio_A 53 IGYHVNATLTGDATYEKVQNADKADLNLVQCHRSINYIAEMMETKYGIPWI 103 (107) T ss_dssp HTCEEEEEEETTCCHHHHHBTTSCSEEEESCHHHHHHHHHHHHHHHCCCEE T ss_pred CCCCEEEECCCCCCHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHHCCCEE T ss_conf 599458971899877888635643389871628899999999998797646 No 18 >>1v5v_A Aminomethyltransferase; glycine-cleavage sytem, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.50A {Pyrococcus horikoshii} (A:55-149) Probab=20.81 E-value=28 Score=15.91 Aligned_cols=71 Identities=13% Similarity=0.222 Sum_probs=37.9 Q ss_pred EEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCEECCCCCCCCCCCCCCC-EEEEECCCCCHHH Q ss_conf 899960342899999999987677520468871101577731433011100687540146885543-5999804489689 Q gi|254780249|r 93 TKVTLRGTNMYDFLDRLINMGMPRIRDFHGLNSRSFDGSGNFSFGIREHIVFPEINYDKVDCVLGM-DISICTTTRSDRE 171 (185) Q Consensus 93 ~kvTLRg~~my~FL~kli~~vlPrikdf~g~~~~~~d~~Gn~sfGi~e~~~FPEi~yd~~~~~~G~-~Iti~Tta~~~~e 171 (185) .++.++|+.+-.||+.++.-=++++.. +.+.|+.-+++.- .+..|......|= .+-+++++...+. T Consensus 2 g~i~v~G~da~~~L~~~~t~di~~l~~----------g~~~~t~~l~~~G---~i~~d~~v~r~~e~~~~l~~~~~~~~~ 68 (95) T 1v5v_A 2 GEIVFRGKDALKFLQYVTTNDISKPPA----------ISGTYTLVLNERG---AIKDETLVFNMGNNEYLMICDSDAFEK 68 (95) T ss_dssp EEEEEESTTHHHHHHHHSSSCTTSSCS----------SEEEEEEEECTTS---CEEEEEEEEEEETTEEEEEECTTTHHH T ss_pred EEEEEECCCHHHHHHHHCCCCCCCCCC----------CCCCEEEEEECCC---CEEEEEEEEEECCCCEECCCCHHHHHH T ss_conf 899998699999998763127621368----------8721388884689---588866997502300000345245544 Q ss_pred HHHHH Q ss_conf 99999 Q gi|254780249|r 172 AKYLL 176 (185) Q Consensus 172 a~~Ll 176 (185) -..-| T Consensus 69 ~~~~l 73 (95) T 1v5v_A 69 LYAWF 73 (95) T ss_dssp HHHHH T ss_pred HHHCC T ss_conf 33202 No 19 >>2wl2_A GYRA, DNA gyrase subunit A; isomerase, aminocoumarin antibiotic, drug target, protein-ligand complex; HET: DNA SM8; 2.62A {Escherichia coli} PDB: 1ab4_A 1x75_A* (A:1-41,A:163-185) Probab=20.42 E-value=39 Score=15.12 Aligned_cols=22 Identities=32% Similarity=0.635 Sum_probs=15.9 Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCC Q ss_conf 2899999999987677520468871101 Q gi|254780249|r 101 NMYDFLDRLINMGMPRIRDFHGLNSRSF 128 (185) Q Consensus 101 ~my~FL~kli~~vlPrikdf~g~~~~~~ 128 (185) .||--++| +||-+|| |+++.-. T Consensus 24 A~sVI~~R----ALPDvrD--GLKPnlL 45 (64) T 2wl2_A 24 AMSVIVGR----ALPDVRD--GLKPNLL 45 (64) T ss_dssp HHHHHHHH----HCCBTTT--CCCCHHH T ss_pred HHHHHHHC----CCCCCCC--CCCHHHH T ss_conf 99999842----4886213--8842898 Done!