Query         gi|254780249|ref|YP_003064662.1| 50S ribosomal protein L5 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 185
No_of_seqs    126 out of 1598
Neff          5.7 
Searched_HMMs 33803
Date          Tue May 24 06:19:05 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780249.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >1mji_A 50S ribosomal protein  100.0       0       0  460.3  20.1  182    4-185     1-182 (182)
  2 >1iq4_A 50S ribosomal protein  100.0       0       0  454.5  20.8  179    7-185     1-179 (179)
  3 >3i1n_F 50S ribosomal protein  100.0       0       0  455.3  18.9  179    7-185     1-179 (179)
  4 >3bbo_H Ribosomal protein L5;  100.0       0       0  458.7  12.4  184    2-185    11-194 (220)
  5 >1vq8_D 50S ribosomal protein  100.0       0       0  377.4   5.9  156   19-185     1-156 (177)
  6 >2noq_H 60S ribosomal protein  100.0       0       0  347.9 -12.6  146   30-185     1-146 (165)
  7 >2rf4_B DNA-directed RNA polym  44.8      15 0.00043   17.6   2.2   42   86-127    15-78  (87)
  8 >1vly_A SPOT PR51, unknown pro  42.9      10 0.00029   18.6   1.2   79   93-184     3-81  (88)
  9 >3gir_A Aminomethyltransferase  38.7      12 0.00035   18.1   1.0   78   93-183     3-81  (89)
 10 >1wsr_A Aminomethyltransferase  31.3      15 0.00043   17.6   0.5   69   93-174     3-72  (94)
 11 >1yx2_A Aminomethyltransferase  28.9      22 0.00066   16.5   1.1   27   93-119     2-28  (88)
 12 >1vlo_A Aminomethyltransferase  28.9      25 0.00075   16.2   1.4   75   93-179     3-78  (90)
 13 >1qys_A TOP7; alpha-beta, nove  26.6      46  0.0013   14.7   3.1   19  159-177    47-65  (106)
 14 >2jvf_A De novo protein M7; te  26.6      46  0.0014   14.7   3.1   21  158-178    48-68  (96)
 15 >2gag_A Heterotetrameric sarco  24.8      25 0.00073   16.3   0.7   39   93-141     2-40  (93)
 16 >1wos_A Aminomethyltransferase  24.8      22 0.00066   16.5   0.5   77   93-182     3-80  (90)
 17 >1mio_A Nitrogenase molybdenum  21.2      30 0.00088   15.8   0.5   49  136-184    53-103 (107)
 18 >1v5v_A Aminomethyltransferase  20.8      28 0.00084   15.9   0.4   71   93-176     2-73  (95)
 19 >2wl2_A GYRA, DNA gyrase subun  20.4      39  0.0012   15.1   1.0   22  101-128    24-45  (64)

No 1  
>>1mji_A 50S ribosomal protein L5; ribosomal protein - 5S rRNA complex, ribosome; 2.50A {Thermus thermophilus} (A:)
Probab=100.00  E-value=0  Score=460.34  Aligned_cols=182  Identities=52%  Similarity=0.941  Sum_probs=180.3

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHCCCCHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCC
Q ss_conf             87561189999999999999982699822286044999974578756537899999998776538961354123764211
Q gi|254780249|r    4 CKYEPRLKKEYCLRIREAMQQEFSYKNVMQIPKIEKVVVNMGVGESIADSKKAESAAADLALITGQKPVITRARRSIAGF   83 (185)
Q Consensus         4 ~~~~pRLk~~Y~~~i~~dL~~k~~~~N~~~vPki~KIvin~gvg~a~~dkk~l~~~~~~L~~ITGqkP~~~~aKksi~~f   83 (185)
                      +.|+|||+.||+++|++||+++++|+|+|++|+|+||+||+|+|+++.|++.++.+..+|+.||||+|++++||+||++|
T Consensus         1 m~~m~~l~~~Y~~~v~~dL~~k~~~~N~~~~Pki~KIvi~~g~g~~~~d~k~l~~~~~~L~~ItGQkp~~t~aKksi~~F   80 (182)
T 1mji_A            1 MPLDVALKRKYYEEVRPELIRRFGYQNVWEVPRLEKVVINQGLGEAKEDARILEKAAQELALITGQKPAVTRAKKSISNF   80 (182)
T ss_dssp             --CCCHHHHHHHHTHHHHHHHHSCCSSGGGSCCEEEEEEEEECTTTCCCHHHHHHHHHHHHHHHTSCCEEEECCSCCCCS
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCHHHCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCC
T ss_conf             99566899999999989999985899940056566999978888200066899999998987538735787615555552


Q ss_pred             CCCCCCEEEEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCEECCCCCCCCCCCCCCCEEEEE
Q ss_conf             15589862889996034289999999998767752046887110157773143301110068754014688554359998
Q gi|254780249|r   84 KLRTGMPIGTKVTLRGTNMYDFLDRLINMGMPRIRDFHGLNSRSFDGSGNFSFGIREHIVFPEINYDKVDCVLGMDISIC  163 (185)
Q Consensus        84 kiRkG~piG~kvTLRg~~my~FL~kli~~vlPrikdf~g~~~~~~d~~Gn~sfGi~e~~~FPEi~yd~~~~~~G~~Iti~  163 (185)
                      |+|||+|+||+|||||++||+||+||+++|+||+|||+|++.++||++|||+||++|+++|||++||++++++||||+|+
T Consensus        81 kirkg~piG~kVTLRg~~my~FL~kli~~vlPrirdf~g~~~~sfd~~gn~sfGi~e~~~FPEi~yd~~~~i~G~~Itiv  160 (182)
T 1mji_A           81 KLRKGMPIGLRVTLRRDRXWIFLEKLLNVALPRIRDFRGLNPNSFDGRGNYNLGLREQLIFPEITYDMVDALRGXDIAVV  160 (182)
T ss_dssp             SSSCCSEEEEEEEECHHHHHHHHHHHHHTTTTTCSSCCCBCTTCBCSSSEEEEEECSCEECSSCEECCTTTSCCEEEEEE
T ss_pred             EECCCCCEEEEEEECHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECHHHEEECCCCCCCCCCCCCCCEEEEE
T ss_conf             01179801699994588999999999997630111002355301147714753522504677613266689786269999


Q ss_pred             CCCCCHHHHHHHHHHHCCCCCC
Q ss_conf             0448968999999980898689
Q gi|254780249|r  164 TTTRSDREAKYLLTLFGFPFPK  185 (185)
Q Consensus       164 Tta~~~~ea~~Lls~~g~Pf~k  185 (185)
                      |+|++++|++.||+++||||+|
T Consensus       161 t~a~~~~~~~~ll~~~~~Pf~k  182 (182)
T 1mji_A          161 TTAETDEEARALLELLGFPFRK  182 (182)
T ss_dssp             ESCSSHHHHHHHHHHHTCCBCC
T ss_pred             ECCCCHHHHHHHHHHCCCCCCC
T ss_conf             3769979999999985997459


No 2  
>>1iq4_A 50S ribosomal protein L5; rRNA-binding, RNP motif, RNA binding protein; 1.80A {Geobacillus stearothermophilus} (A:)
Probab=100.00  E-value=0  Score=454.50  Aligned_cols=179  Identities=56%  Similarity=1.023  Sum_probs=177.7

Q ss_pred             CCHHHHHHHHHHHHHHHHHHCCCCHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCC
Q ss_conf             61189999999999999982699822286044999974578756537899999998776538961354123764211155
Q gi|254780249|r    7 EPRLKKEYCLRIREAMQQEFSYKNVMQIPKIEKVVVNMGVGESIADSKKAESAAADLALITGQKPVITRARRSIAGFKLR   86 (185)
Q Consensus         7 ~pRLk~~Y~~~i~~dL~~k~~~~N~~~vPki~KIvin~gvg~a~~dkk~l~~~~~~L~~ITGqkP~~~~aKksi~~fkiR   86 (185)
                      +|||+.||+++|++||+++++|+|+|++|+|+||+||+|+|++++|++.++.+..+|+.||||+|++++||+|||+||+|
T Consensus         1 m~~l~~~Y~~~i~~dL~~k~~~~n~~~iP~i~KIvin~gvg~~~~~~~~l~~~~~~L~~ItGQkp~~t~akksia~fkir   80 (179)
T 1iq4_A            1 MNRLKEKYLNEVVPALMSKFNYKSIMQVPKIEKIVINMGVGDAVQNPKALDSAVEELTLIAGQRPVVTRAKKSIAGFRLR   80 (179)
T ss_dssp             CCHHHHHHHHTHHHHHHHHHCCSSGGGSCCEEEEEEEEECSCSSSCHHHHHHHHHHHHHHHSSCCEEEECCSCSCSSSCC
T ss_pred             CCHHHHHHHHHHHHHHHHHHCCCCCHHCCEEEEEEEECCCCCHHHCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCC
T ss_conf             91789999999999999986899810056145999978887133262789999999998628863156647552222102


Q ss_pred             CCCEEEEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCEECCCCCCCCCCCCCCCEEEEECCC
Q ss_conf             89862889996034289999999998767752046887110157773143301110068754014688554359998044
Q gi|254780249|r   87 TGMPIGTKVTLRGTNMYDFLDRLINMGMPRIRDFHGLNSRSFDGSGNFSFGIREHIVFPEINYDKVDCVLGMDISICTTT  166 (185)
Q Consensus        87 kG~piG~kvTLRg~~my~FL~kli~~vlPrikdf~g~~~~~~d~~Gn~sfGi~e~~~FPEi~yd~~~~~~G~~Iti~Tta  166 (185)
                      ||+|+||+|||||++||+||+||+++||||+|||+|++.++||++|||+||++|+++|||++||++++++||||||||+|
T Consensus        81 kg~~iG~kvTLRg~~my~FL~kli~~vlPrirdf~g~~~~~fd~~gn~sfGi~~~~~FPEi~~d~~~~i~G~~itivt~a  160 (179)
T 1iq4_A           81 QGMPIGAKVTLRGERMYEFLDKLISVSLPRARDFRGVSKKSFDGRGNYTLGIKEQLIFPEIDYDKVNKVRGMDIVIVTTA  160 (179)
T ss_dssp             TTCEEEEEEEECHHHHHHHHHHHHHTTGGGSTTCCCBCSSCBCSSSEEEEEESCGGGSTTCCGGGSSCCCCEEEEEEESC
T ss_pred             CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCEEEEEECC
T ss_conf             79855899983423299999999997545654302685331178885150501301167744366689887659999466


Q ss_pred             CCHHHHHHHHHHHCCCCCC
Q ss_conf             8968999999980898689
Q gi|254780249|r  167 RSDREAKYLLTLFGFPFPK  185 (185)
Q Consensus       167 ~~~~ea~~Lls~~g~Pf~k  185 (185)
                      ++++||+.||++|||||+|
T Consensus       161 ~~~~~~~~lls~~~~Pf~k  179 (179)
T 1iq4_A          161 NTDEEARELLALLGMPFQK  179 (179)
T ss_dssp             SSHHHHHHHHHHHTCCBCC
T ss_pred             CCHHHHHHHHHHCCCCCCC
T ss_conf             9979999999985998369


No 3  
>>3i1n_F 50S ribosomal protein L5; ribosome structure, protein-RNA complex, acetylation, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA- binding, methylation; 3.19A {Escherichia coli k-12} PDB: 1vs8_F 1vs6_F 3i1p_F 3i1r_F 3i1t_F 3i20_F 3i22_F 2qam_F* 1p85_D 1p86_D 2awb_F 2aw4_F 2i2v_F 2j28_F 2i2t_F* 2qao_F* 2qba_F* 2qbc_F* 2qbe_F 2qbg_F ... (F:)
Probab=100.00  E-value=0  Score=455.29  Aligned_cols=179  Identities=57%  Similarity=1.005  Sum_probs=177.7

Q ss_pred             CCHHHHHHHHHHHHHHHHHHCCCCHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCC
Q ss_conf             61189999999999999982699822286044999974578756537899999998776538961354123764211155
Q gi|254780249|r    7 EPRLKKEYCLRIREAMQQEFSYKNVMQIPKIEKVVVNMGVGESIADSKKAESAAADLALITGQKPVITRARRSIAGFKLR   86 (185)
Q Consensus         7 ~pRLk~~Y~~~i~~dL~~k~~~~N~~~vPki~KIvin~gvg~a~~dkk~l~~~~~~L~~ITGqkP~~~~aKksi~~fkiR   86 (185)
                      +|||++||+++|++||+++++|+|+|++|+|+||+||+|+|++++|++.++.+..+|+.||||+|++++||+|||+||+|
T Consensus         1 m~~l~~~Y~~~i~~~l~~k~~~~n~~~~Pkl~KIvin~g~g~a~~~~~~l~~~~~~L~~ItGQkp~~~~aKksia~fkiR   80 (179)
T 3i1n_F            1 MAKLHDYYKDEVVKKLMTEFNYNSVMQVPRVEKITLNMGVGEAIADKKLLDNAAADLAAISGQKPLITKARKSVAGFKIR   80 (179)
T ss_dssp             -CTHHHHHTTTTHHHHHHHHTCSSGGGSCCEEEEEEECCCSCTTTCHHHHHHHHHHHHHHSSSCCEEEECSSCBGGGTBC
T ss_pred             CCHHHHHHHHHHHHHHHHHHCCCCCHHCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCC
T ss_conf             90789999999999999975899800166467999965787434561888999999987630535886426533344434


Q ss_pred             CCCEEEEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCEECCCCCCCCCCCCCCCEEEEECCC
Q ss_conf             89862889996034289999999998767752046887110157773143301110068754014688554359998044
Q gi|254780249|r   87 TGMPIGTKVTLRGTNMYDFLDRLINMGMPRIRDFHGLNSRSFDGSGNFSFGIREHIVFPEINYDKVDCVLGMDISICTTT  166 (185)
Q Consensus        87 kG~piG~kvTLRg~~my~FL~kli~~vlPrikdf~g~~~~~~d~~Gn~sfGi~e~~~FPEi~yd~~~~~~G~~Iti~Tta  166 (185)
                      ||+|+||||||||++||+||+||+++||||||||+|++.++||++|||+||++|+++||||+||.+++++||||+|||+|
T Consensus        81 kg~~iG~kvTLRg~~m~~FL~kli~~vlPrirdf~g~~~~~fd~~gn~sfGi~~~~~FPEi~~d~~~~~~G~~itivt~a  160 (179)
T 3i1n_F           81 QGYPIGCKVTLRGERMWEFFERLITIAVPRIRDFRGLSAKSFDGRGNYSMGVREQIIFPEIDYDKVDRVRGLDITITTTA  160 (179)
T ss_dssp             TTCEEEEEEEECHHHHHHHHHHHHHTTGGGSSSCCCCCSCCCCSSSBCCEECSSCCSSTTSCGGGCCCCCCCEEEEEESC
T ss_pred             CCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCCEEEECHHHHHHCCCCCCCCCCCCCCCEEEEEECC
T ss_conf             89815899851325679999999998756540135788411155646884307864254345565578687359999625


Q ss_pred             CCHHHHHHHHHHHCCCCCC
Q ss_conf             8968999999980898689
Q gi|254780249|r  167 RSDREAKYLLTLFGFPFPK  185 (185)
Q Consensus       167 ~~~~ea~~Lls~~g~Pf~k  185 (185)
                      ++++||+.||+++||||+|
T Consensus       161 ~~~~~a~~ll~~~~~Pf~k  179 (179)
T 3i1n_F          161 KSDEEGRALLAAFDFPFRK  179 (179)
T ss_dssp             SSHHHHHHHHHHSCCCCC-
T ss_pred             CCHHHHHHHHHHCCCCCCC
T ss_conf             9989999999984998479


No 4  
>>3bbo_H Ribosomal protein L5; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} (H:)
Probab=100.00  E-value=0  Score=458.67  Aligned_cols=184  Identities=50%  Similarity=0.874  Sum_probs=181.7

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCC
Q ss_conf             98875611899999999999999826998222860449999745787565378999999987765389613541237642
Q gi|254780249|r    2 VDCKYEPRLKKEYCLRIREAMQQEFSYKNVMQIPKIEKVVVNMGVGESIADSKKAESAAADLALITGQKPVITRARRSIA   81 (185)
Q Consensus         2 ~~~~~~pRLk~~Y~~~i~~dL~~k~~~~N~~~vPki~KIvin~gvg~a~~dkk~l~~~~~~L~~ITGqkP~~~~aKksi~   81 (185)
                      ++++|+|||+.||+++|++||+++++|+|+|++|+|+||+||+|+|++++|++.++.+..+|+.||||+|++++||+||+
T Consensus        11 ~~~~~m~~l~~~Y~~~v~~dL~~k~~~~N~m~vPki~KIvin~gvg~~~~d~k~l~~a~~~L~~ITGQkP~~t~AKksia   90 (220)
T 3bbo_H           11 AEAETINRLKTNYIEKMVPLLKEEFSYSNILEVPKVVKIVVNCGIGDASQNAKGLDAAINELALITGQRPVKTKAKTSIA   90 (220)
T ss_dssp             -------CHHHHHTTTHHHHHHHSSCCCCSSSSCCEEEEECCCCCCCSSCCHHHHHHHHHHHHHHTCSCCCCCBCCSCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCHHCCHHHHHHHHHHHHHHHHCEEECCCCCCCCC
T ss_conf             55456689999999999999999848998511671569998678881220657899999998877525100034545531


Q ss_pred             CCCCCCCCEEEEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCEECCCCCCCCCCCCCCCEEE
Q ss_conf             11155898628899960342899999999987677520468871101577731433011100687540146885543599
Q gi|254780249|r   82 GFKLRTGMPIGTKVTLRGTNMYDFLDRLINMGMPRIRDFHGLNSRSFDGSGNFSFGIREHIVFPEINYDKVDCVLGMDIS  161 (185)
Q Consensus        82 ~fkiRkG~piG~kvTLRg~~my~FL~kli~~vlPrikdf~g~~~~~~d~~Gn~sfGi~e~~~FPEi~yd~~~~~~G~~It  161 (185)
                      +||+|||+|+||||||||++||+||+||+++||||||||+|++.++||++|||+||++|+++|||++||.+++++||||+
T Consensus        91 ~FkiRkg~piG~kvTLRg~~my~FL~kli~~vlPrirdf~gi~~~sfd~~gN~sfGi~e~~~FPEi~~d~~~~i~G~~It  170 (220)
T 3bbo_H           91 GFKVREGMTLGIAVTLRGNLMYSFLDRLINLALPRTRDFQGVNPNSFDGHGNYSVGFREQSVFPEIKPEIVGKARGMDVC  170 (220)
T ss_dssp             SSCCCTTCBCCCCCEECTHHHHHHHHHHHHSSTTTSSSCCCCCCSCCCSSSEEEEEECSCCCCSSCCTTSCSSCCCEEEE
T ss_pred             CCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCHHHHHCCCCCCCCCCCCCCCEEE
T ss_conf             11324898226899975544999999999999987541135686312467714544035430888774224673660289


Q ss_pred             EECCCCCHHHHHHHHHHHCCCCCC
Q ss_conf             980448968999999980898689
Q gi|254780249|r  162 ICTTTRSDREAKYLLTLFGFPFPK  185 (185)
Q Consensus       162 i~Tta~~~~ea~~Lls~~g~Pf~k  185 (185)
                      |||+|++++|+++|||+|||||.+
T Consensus       171 ivtta~t~~~a~~Lls~~g~Pf~~  194 (220)
T 3bbo_H          171 ITTTAKTDKEAYKLLSLMGMPFRE  194 (220)
T ss_dssp             EEESCSSGGGTHHHHHTTTCCC--
T ss_pred             EEECCCCHHHHHHHHHHCCCCCCC
T ss_conf             995259979999999986998626


No 5  
>>1vq8_D 50S ribosomal protein L5P; ribosome 50S, protein-protein complex, RNA-RNA complex, protein-RNA complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} (D:)
Probab=100.00  E-value=0  Score=377.42  Aligned_cols=156  Identities=35%  Similarity=0.517  Sum_probs=151.1

Q ss_pred             HHHHHHHHCCCCHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCEEEEEEEEE
Q ss_conf             99999982699822286044999974578756537899999998776538961354123764211155898628899960
Q gi|254780249|r   19 REAMQQEFSYKNVMQIPKIEKVVVNMGVGESIADSKKAESAAADLALITGQKPVITRARRSIAGFKLRTGMPIGTKVTLR   98 (185)
Q Consensus        19 ~~dL~~k~~~~N~~~vPki~KIvin~gvg~a~~dkk~l~~~~~~L~~ITGqkP~~~~aKksi~~fkiRkG~piG~kvTLR   98 (185)
                      .+||+++++|+|+|++|+|+|||||+|+|++++   .++.+..+|+.||||+|+.++||+||++||+|+|+|+||+||||
T Consensus         1 ~~~L~~k~~~~N~m~vP~i~KIvin~gvg~~~~---~l~~a~~~L~~ITGQkP~~t~AKksi~~fkiRkg~piG~kvTLR   77 (177)
T 1vq8_D            1 MSSESESGGDFHEMREPRIEKVVVHMGIGHGGR---DLANAEDILGEITGQMPVRTKAKRTVGEFDIREGDPIGAKVTLR   77 (177)
T ss_dssp             ----------CCTTTSCEEEEEEEEEECCC--------CTTHHHHHHHTSSCCEEEECCSCBTTTBCCSSSEEEEEEEEC
T ss_pred             CCCHHHHCCCCCCCCCCEEEEEEEECCCCHHHH---HHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCEEEEEEEEC
T ss_conf             942112107888856846779999758773356---08999999999729963034443455652021697178999975


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCEECCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHH
Q ss_conf             34289999999998767752046887110157773143301110068754014688554359998044896899999998
Q gi|254780249|r   99 GTNMYDFLDRLINMGMPRIRDFHGLNSRSFDGSGNFSFGIREHIVFPEINYDKVDCVLGMDISICTTTRSDREAKYLLTL  178 (185)
Q Consensus        99 g~~my~FL~kli~~vlPrikdf~g~~~~~~d~~Gn~sfGi~e~~~FPEi~yd~~~~~~G~~Iti~Tta~~~~ea~~Lls~  178 (185)
                      |++||+||+||+++|+||+|        +||+.|||+||++|+++|||++||++++++||||||+|+|+++++|+.||++
T Consensus        78 G~~my~FL~kli~~v~p~ir--------~Fd~~gN~sfGi~e~~~FPei~~d~~~~i~G~~itivt~a~~~~~a~~lls~  149 (177)
T 1vq8_D           78 DEMAEEFLQTALPLAELATS--------QFDDTGNFSFGVEEHTEFPSQEYDPSIGIYGLDVTVNLVRPGYRVAKRDKAS  149 (177)
T ss_dssp             THHHHHHHHHHGGGSCCCGG--------GBCSSSCEEEC--------------------CEEEEEEECGGGGGGTSSTTC
T ss_pred             CHHHHHHHHHHHCCCCCCCC--------CCCCCEEEEECCHHHEECCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHH
T ss_conf             56599999998442657743--------4489606886725751555342024466403259999568872899999987


Q ss_pred             HCCCCCC
Q ss_conf             0898689
Q gi|254780249|r  179 FGFPFPK  185 (185)
Q Consensus       179 ~g~Pf~k  185 (185)
                      +||||++
T Consensus       150 ~~iPf~~  156 (177)
T 1vq8_D          150 RSIPTKH  156 (177)
T ss_dssp             CCCCGGG
T ss_pred             HCCCCCC
T ss_conf             1698546


No 6  
>>2noq_H 60S ribosomal protein L11-B; IRES RNA, ribosome, translation, internal initiation; 7.30A {Saccharomyces cerevisiae} PDB: 1s1i_J 2zkr_d (H:)
Probab=100.00  E-value=0  Score=347.87  Aligned_cols=146  Identities=34%  Similarity=0.482  Sum_probs=140.6

Q ss_pred             CHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCEEEEEEEEECCHHHHHHHHH
Q ss_conf             82228604499997457875653789999999877653896135412376421115589862889996034289999999
Q gi|254780249|r   30 NVMQIPKIEKVVVNMGVGESIADSKKAESAAADLALITGQKPVITRARRSIAGFKLRTGMPIGTKVTLRGTNMYDFLDRL  109 (185)
Q Consensus        30 N~~~vPki~KIvin~gvg~a~~dkk~l~~~~~~L~~ITGqkP~~~~aKksi~~fkiRkG~piG~kvTLRg~~my~FL~kl  109 (185)
                      |+|++|+|+||+||+|+|++++   .++.+..+|+.||||+|++++||+++++||+|||+|+||||||||++||+||+||
T Consensus         1 N~m~vP~i~KIvin~gv~~a~~---~l~~a~~~Le~ITGQkp~~~~aKksi~~fkiRkg~piG~kVTLRg~~my~FL~kl   77 (165)
T 2noq_H            1 NPMRDLKIEKLVLNISVGESGD---RLTRASKVLEQLSGQTPVQSKARYTVRTFGIRRNEKIAVHVTVRGPKAEEILERG   77 (165)
T ss_dssp             CTTTSCEEECCCCCCCSSCSSS---SSSCSSSTTSSSSSCCCCCCCCCCCCSSSCCCSSCCCCCCCCCCSSSSSSSSSSS
T ss_pred             CCCCCCEEEEEEEECCCCHHHH---HHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCCCCEEEEEEECCHHHHHHHHHH
T ss_conf             9977747669999778464277---7999999999964997570116655324000356625789886565788999998


Q ss_pred             HHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCEECCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCC
Q ss_conf             9987677520468871101577731433011100687540146885543599980448968999999980898689
Q gi|254780249|r  110 INMGMPRIRDFHGLNSRSFDGSGNFSFGIREHIVFPEINYDKVDCVLGMDISICTTTRSDREAKYLLTLFGFPFPK  185 (185)
Q Consensus       110 i~~vlPrikdf~g~~~~~~d~~Gn~sfGi~e~~~FPEi~yd~~~~~~G~~Iti~Tta~~~~ea~~Lls~~g~Pf~k  185 (185)
                      +++|+||+||      .+||..||++|||+|+. +||++||++++++||||||+|+|++++|++.||+++|+||++
T Consensus        78 i~~v~prir~------~~fd~~gn~sfGi~~~~-e~e~~~d~~~~i~G~~itivt~a~~~~~~~~lls~~~iPf~~  146 (165)
T 2noq_H           78 LKVKEYQLRD------RNFSATGNFGFGIDEHI-DLGIKYDPSIGIFGMDFYVVMNRPGARVTRRKRCKGTVGNSH  146 (165)
T ss_dssp             SSSSCTTCSS------TTSCTTSCCCCCCCCSC-CCSSSSCCCCCCSTTTCCCEEECSSCSTTTSSSSCCCCCSSS
T ss_pred             HHCCCCCCCC------CCCCCCCEEEECCHHHC-CCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHCCCCCCCC
T ss_conf             7300544323------34168732664446651-455552665655320499997899714877655317788556


No 7  
>>2rf4_B DNA-directed RNA polymerase I subunit RPA4; transferase DNA/RNA, DNA-binding, phosphorylation, POL I, POLI, rpoli, nuclear protein; 3.10A {Saccharomyces cerevisiae} (B:)
Probab=44.82  E-value=15  Score=17.61  Aligned_cols=42  Identities=29%  Similarity=0.555  Sum_probs=29.3

Q ss_pred             CCCCEEEEEEE-----EECCHHHHHHHHHHHH-------------H---HHHH-HHCCCCCCCC
Q ss_conf             58986288999-----6034289999999998-------------7---6775-2046887110
Q gi|254780249|r   86 RTGMPIGTKVT-----LRGTNMYDFLDRLINM-------------G---MPRI-RDFHGLNSRS  127 (185)
Q Consensus        86 RkG~piG~kvT-----LRg~~my~FL~kli~~-------------v---lPri-kdf~g~~~~~  127 (185)
                      --+.|+-.+|+     +-++.|..||+++|..             +   |-|| |||||+++..
T Consensus        15 alNtPvvi~v~g~~q~v~~~eae~~L~~FI~~~E~~~~~d~~~ss~LsQLKRiQRdlrGLPPl~   78 (87)
T 2rf4_B           15 TLNTPVVIHATQLPQHVSTDEVLQFLESFIDEKENIIDIDTNLSSSISQLKRIQRDFKGLPPAQ   78 (87)
T ss_dssp             -CCCCCEEEESSCCEECCHHHHHHHHHHHHHHHHSSSCCCTTHHHHHHHHHHHHHHHHHSCC--
T ss_pred             CCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCC
T ss_conf             4678867885057554599999999999987777653056304889999999986405899832


No 8  
>>1vly_A SPOT PR51, unknown protein from 2D-PAGE; 1789265, B2898, unknown protein from 2D-PAGE (SPOT PR51), structural genomics, JCSG; HET: MSE; 1.30A {Escherichia coli} (A:38-125)
Probab=42.92  E-value=10  Score=18.57  Aligned_cols=79  Identities=5%  Similarity=-0.045  Sum_probs=49.2

Q ss_pred             EEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCEECCCCCCCCCCCCCCCEEEEECCCCCHHHH
Q ss_conf             89996034289999999998767752046887110157773143301110068754014688554359998044896899
Q gi|254780249|r   93 TKVTLRGTNMYDFLDRLINMGMPRIRDFHGLNSRSFDGSGNFSFGIREHIVFPEINYDKVDCVLGMDISICTTTRSDREA  172 (185)
Q Consensus        93 ~kvTLRg~~my~FL~kli~~vlPrikdf~g~~~~~~d~~Gn~sfGi~e~~~FPEi~yd~~~~~~G~~Iti~Tta~~~~ea  172 (185)
                      .++.+.|+.+-+||+++++--++++.+          +.+.|+.-+++.-   .+..|.+.-..|=+.-+.+++...++.
T Consensus         3 ~~i~v~G~Da~~fL~~l~t~di~~l~~----------g~~~~t~~ln~~G---~i~~d~~v~~~~e~~~l~~~~~~~~~~   69 (88)
T 1vly_A            3 ALATITGADSEKYXQGQVTADVSQXAE----------DQHLLAAHCDAKG---KXWSNLRLFRDGDGFAWIERRSVREPQ   69 (88)
T ss_dssp             EEEEEESTTHHHHHHTTBSSCGGGCCT----------TCEEEEEEECTTS---CEEEEEEEEEETTEEEEEEEHHHHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHCCCCCCCC----------CCEEEEEEECCCC---CEEEEEEEEECCCCEEEEEECCCCHHH
T ss_conf             699998889999961543207201699----------9789999987888---879989999828957998640000256


Q ss_pred             HHHHHHHCCCCC
Q ss_conf             999998089868
Q gi|254780249|r  173 KYLLTLFGFPFP  184 (185)
Q Consensus       173 ~~Lls~~g~Pf~  184 (185)
                      ..-|..+.+++.
T Consensus        70 ~~~l~~~~~~~~   81 (88)
T 1vly_A           70 LTELKKYAVFSK   81 (88)
T ss_dssp             HHHHHTTCSSSS
T ss_pred             HHHHHHHHCCCC
T ss_conf             667665401443


No 9  
>>3gir_A Aminomethyltransferase; glycine cleavage system, aminotransferase, structural genomics; 1.60A {Bartonella henselae} (A:83-171)
Probab=38.73  E-value=12  Score=18.12  Aligned_cols=78  Identities=14%  Similarity=0.184  Sum_probs=43.0

Q ss_pred             EEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCEECCCCCCCCCCCCCC-CEEEEECCCCCHHH
Q ss_conf             89996034289999999998767752046887110157773143301110068754014688554-35999804489689
Q gi|254780249|r   93 TKVTLRGTNMYDFLDRLINMGMPRIRDFHGLNSRSFDGSGNFSFGIREHIVFPEINYDKVDCVLG-MDISICTTTRSDRE  171 (185)
Q Consensus        93 ~kvTLRg~~my~FL~kli~~vlPrikdf~g~~~~~~d~~Gn~sfGi~e~~~FPEi~yd~~~~~~G-~~Iti~Tta~~~~e  171 (185)
                      .++.++|+.+-+||+.+++--++++++-+          +.|+.-+++.-   -+.-|.+.-..| =.+-+++++...++
T Consensus         3 ~~i~v~G~Da~~fLq~l~t~di~~l~~g~----------~~~t~~ln~~G---~i~~d~~i~~~~ed~~~l~~~~~~~~~   69 (89)
T 3gir_A            3 KLIAVEGPKAVEFLSYALPVDAALLKIGQ----------SRYSYLLNERA---GILDDLILTRLAECRFMLVANAGNAQA   69 (89)
T ss_dssp             EEEEEESTTHHHHHHHHSSSCTTTSCTTB----------EEEEEEECTTC---CEEEEEEEEEEETTEEEEEECGGGHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHCCCCCCCCC----------CCCEEEECCCC---CCEEEEEEEEECCCCCCCCCCCCCCCC
T ss_conf             89999898999999877654633221024----------54125642777---623566887522664322232223210


Q ss_pred             HHHHHHHHCCCC
Q ss_conf             999999808986
Q gi|254780249|r  172 AKYLLTLFGFPF  183 (185)
Q Consensus       172 a~~Lls~~g~Pf  183 (185)
                      ...-|+.+.+++
T Consensus        70 ~~~~l~~~~~~~   81 (89)
T 3gir_A           70 DFAELEKRAFGF   81 (89)
T ss_dssp             HHHHHHHHTTTS
T ss_pred             HHHHCCCCCCCC
T ss_conf             100001113565


No 10 
>>1wsr_A Aminomethyltransferase; glycine-cleavage sytem; 2.00A {Homo sapiens} PDB: 1wsv_A* (A:55-148)
Probab=31.29  E-value=15  Score=17.62  Aligned_cols=69  Identities=12%  Similarity=0.132  Sum_probs=36.0

Q ss_pred             EEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCEECCCCCCCCCCCCCCC-EEEEECCCCCHHH
Q ss_conf             899960342899999999987677520468871101577731433011100687540146885543-5999804489689
Q gi|254780249|r   93 TKVTLRGTNMYDFLDRLINMGMPRIRDFHGLNSRSFDGSGNFSFGIREHIVFPEINYDKVDCVLGM-DISICTTTRSDRE  171 (185)
Q Consensus        93 ~kvTLRg~~my~FL~kli~~vlPrikdf~g~~~~~~d~~Gn~sfGi~e~~~FPEi~yd~~~~~~G~-~Iti~Tta~~~~e  171 (185)
                      .++.+.|+.+.+||+++++--++++..          +.+.|+.-+++.-   .+..|...--.|= .+-+++++...++
T Consensus         3 g~i~v~G~da~~~L~~l~t~dv~~l~~----------g~~~yt~~l~~~G---~i~~d~~v~r~~e~~~~l~~~~~~~~~   69 (94)
T 1wsr_A            3 LQTKILGSDRVKLMESLVVGDIAELRP----------NQGTLSLFTNEAG---GILDDLIVTNTSEGHLYVVSNAGCWEK   69 (94)
T ss_dssp             EEEEEESTTHHHHHHHHBSSCCTTCCT----------TEEEEEEEECTTC---CEEEEEEEEECTTSSEEEEECGGGHHH
T ss_pred             EEEEEECCCHHHHHHHHHCCCHHHHCC----------CCCCCCCCCCCCC---CEEECCCCCCCCCEEEEEEEEHHHHHH
T ss_conf             899998689999998871457355332----------4432122247888---767603220124302355520121122


Q ss_pred             HHH
Q ss_conf             999
Q gi|254780249|r  172 AKY  174 (185)
Q Consensus       172 a~~  174 (185)
                      -..
T Consensus        70 ~~~   72 (94)
T 1wsr_A           70 DLA   72 (94)
T ss_dssp             HHH
T ss_pred             HHH
T ss_conf             233


No 11 
>>1yx2_A Aminomethyltransferase; glycine cleavage system T protein, alpha-beta, beta-barrel, structural genomics, PSI, protein structure initiative; 2.08A {Bacillus subtilis} (A:55-142)
Probab=28.89  E-value=22  Score=16.52  Aligned_cols=27  Identities=22%  Similarity=0.442  Sum_probs=20.7

Q ss_pred             EEEEEECCHHHHHHHHHHHHHHHHHHH
Q ss_conf             899960342899999999987677520
Q gi|254780249|r   93 TKVTLRGTNMYDFLDRLINMGMPRIRD  119 (185)
Q Consensus        93 ~kvTLRg~~my~FL~kli~~vlPrikd  119 (185)
                      -++.+.|+.+-+||+.+++--++++..
T Consensus         2 G~i~v~G~Da~~fL~~l~t~di~~l~~   28 (88)
T 1yx2_A            2 GEVEVSGNDSLSFLQRLXTNDVSALTP   28 (88)
T ss_dssp             EEEEEESTTHHHHHHHHBSSCGGGCCT
T ss_pred             EEEEEECCCHHHHHHHHCHHHEECCCC
T ss_conf             899998799999998745111224676


No 12 
>>1vlo_A Aminomethyltransferase; NP417381, tetrahydrofolate-dependent) of glycine cleavage system, structural genomics, JCSG; HET: MSE; 1.70A {Escherichia coli K12} (A:63-152)
Probab=28.87  E-value=25  Score=16.22  Aligned_cols=75  Identities=16%  Similarity=0.188  Sum_probs=40.1

Q ss_pred             EEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCEECCCCCCCCCCCCCC-CEEEEECCCCCHHH
Q ss_conf             89996034289999999998767752046887110157773143301110068754014688554-35999804489689
Q gi|254780249|r   93 TKVTLRGTNMYDFLDRLINMGMPRIRDFHGLNSRSFDGSGNFSFGIREHIVFPEINYDKVDCVLG-MDISICTTTRSDRE  171 (185)
Q Consensus        93 ~kvTLRg~~my~FL~kli~~vlPrikdf~g~~~~~~d~~Gn~sfGi~e~~~FPEi~yd~~~~~~G-~~Iti~Tta~~~~e  171 (185)
                      .++.++|+.+-+||+.+++--++++      .   -++.+.|+.-+++.-   .+..|.+.-..+ =.+-+++++...++
T Consensus         3 g~i~v~G~da~~fL~~~~t~di~~l------~---~~g~~~yt~~ln~~G---~i~~d~~i~~~~e~~~~l~~~~~~~~~   70 (90)
T 1vlo_A            3 TIVDLRGSRTREFLRYLLANDVAKL------T---KSGKALYSGXLNASG---GVIDDLIVYYFTEDFFRLVVNSATREK   70 (90)
T ss_dssp             EEEEEESTTHHHHHHHHBSSCGGGC------C---STTBEEEEEEECTTS---CEEEEEEEEEEETTEEEEEECGGGHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHCCCCC------C---CCCCEEEHHHHCCCC---EEEEEECCCCCCCCCCEEEEECCHHHH
T ss_conf             8999989989999998765212224------5---552103112423687---399850233234675314540014889


Q ss_pred             HHHHHHHH
Q ss_conf             99999980
Q gi|254780249|r  172 AKYLLTLF  179 (185)
Q Consensus       172 a~~Lls~~  179 (185)
                      -..-|+.+
T Consensus        71 ~~~~l~~~   78 (90)
T 1vlo_A           71 DLSWITQH   78 (90)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
T ss_conf             99988876


No 13 
>>1qys_A TOP7; alpha-beta, novel fold, de novo protein; 2.50A {Computationally designed sequence} (A:)
Probab=26.62  E-value=46  Score=14.72  Aligned_cols=19  Identities=26%  Similarity=0.441  Sum_probs=7.7

Q ss_pred             EEEEECCCCCHHHHHHHHH
Q ss_conf             5999804489689999999
Q gi|254780249|r  159 DISICTTTRSDREAKYLLT  177 (185)
Q Consensus       159 ~Iti~Tta~~~~ea~~Lls  177 (185)
                      ++.|..||.++++|..|+.
T Consensus        47 ~V~ItIsA~~~~qA~~~~~   65 (106)
T 1qys_A           47 RVRISITARTKKEAEKFAA   65 (106)
T ss_dssp             EEEEEEECSSHHHHHHHHH
T ss_pred             EEEEEEEECCHHHHHHHHH
T ss_conf             5899999666788999999


No 14 
>>2jvf_A De novo protein M7; tetrapeptide fragment-based protein design, artificial fold; NMR {Unidentified} (A:)
Probab=26.58  E-value=46  Score=14.71  Aligned_cols=21  Identities=33%  Similarity=0.504  Sum_probs=11.7

Q ss_pred             CEEEEECCCCCHHHHHHHHHH
Q ss_conf             359998044896899999998
Q gi|254780249|r  158 MDISICTTTRSDREAKYLLTL  178 (185)
Q Consensus       158 ~~Iti~Tta~~~~ea~~Lls~  178 (185)
                      -++.|..||.++++|..|+..
T Consensus        48 r~V~ItIsA~~~~qA~~~~~l   68 (96)
T 2jvf_A           48 RNVQITISAENDEQAKELLEL   68 (96)
T ss_dssp             SEEEEEEECSSHHHHHHHHHH
T ss_pred             CEEEEEEEECCHHHHHHHHHH
T ss_conf             448999996566789999999


No 15 
>>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate- methylating enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* (A:632-724)
Probab=24.80  E-value=25  Score=16.28  Aligned_cols=39  Identities=23%  Similarity=0.562  Sum_probs=26.0

Q ss_pred             EEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCC
Q ss_conf             8999603428999999999876775204688711015777314330111
Q gi|254780249|r   93 TKVTLRGTNMYDFLDRLINMGMPRIRDFHGLNSRSFDGSGNFSFGIREH  141 (185)
Q Consensus        93 ~kvTLRg~~my~FL~kli~~vlPrikdf~g~~~~~~d~~Gn~sfGi~e~  141 (185)
                      .++-++|+.+-+||+.+++--++++      +    ++.+.|+.-+++.
T Consensus         2 g~i~v~G~da~~~L~~l~t~di~~l------~----~g~~~yt~~ln~~   40 (93)
T 2gag_A            2 GKIEIRGKDAAEFLNRIYTNGYTKL------K----VGMGRYGVMCKAD   40 (93)
T ss_dssp             EEEEEESTTHHHHHHHHBSSCCTTC------C----TTBEEEEEEECTT
T ss_pred             EEEEEECCCHHHHHHHHHHHCCCCC------C----CCCEEECCEECCC
T ss_conf             8999983828999988766321358------9----8722001004489


No 16 
>>1wos_A Aminomethyltransferase; T-protein; 1.84A {Thermotoga maritima} (A:50-139)
Probab=24.78  E-value=22  Score=16.52  Aligned_cols=77  Identities=16%  Similarity=0.149  Sum_probs=40.6

Q ss_pred             EEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCEECCCCCCCCCCCCCC-CEEEEECCCCCHHH
Q ss_conf             89996034289999999998767752046887110157773143301110068754014688554-35999804489689
Q gi|254780249|r   93 TKVTLRGTNMYDFLDRLINMGMPRIRDFHGLNSRSFDGSGNFSFGIREHIVFPEINYDKVDCVLG-MDISICTTTRSDRE  171 (185)
Q Consensus        93 ~kvTLRg~~my~FL~kli~~vlPrikdf~g~~~~~~d~~Gn~sfGi~e~~~FPEi~yd~~~~~~G-~~Iti~Tta~~~~e  171 (185)
                      .++.++|+.+.+||+.+++--++++..          +.+.|+.-+++.-   -+..|.+.-..| =.+-+++++...++
T Consensus         3 ~~i~v~G~da~~~L~~~~t~dv~~l~~----------g~~~~~~~ln~~G---~i~~d~~v~~~~ed~~~l~~~~~~~~~   69 (90)
T 1wos_A            3 GEFLVKGPEAVSFIDFLITNDFSSLPD----------GKAIYSVMCNENG---GIIDDLVVYKVSPDEALMVVNAANIEK   69 (90)
T ss_dssp             EEEEEESTTHHHHHHHHBSSCCTTCCT----------TEEEEEEEECTTS---CEEEEEEEEEEETTEEEEEECGGGHHH
T ss_pred             EEEEEECCCHHHHHHHHHCCCCCCCCC----------CCCCCEEECCCCC---EEEEEECCCCCCCCCCCCCCCCCCHHH
T ss_conf             899998799999998873578644653----------3322101026555---389840011111011002345442344


Q ss_pred             HHHHHHHHCCC
Q ss_conf             99999980898
Q gi|254780249|r  172 AKYLLTLFGFP  182 (185)
Q Consensus       172 a~~Lls~~g~P  182 (185)
                      -...|+.+.++
T Consensus        70 ~~~~l~~~~~~   80 (90)
T 1wos_A           70 DFNWIKSHSKN   80 (90)
T ss_dssp             HHHHHHTTCTT
T ss_pred             HHHHHHCCCCC
T ss_conf             44431003333


No 17 
>>1mio_A Nitrogenase molybdenum iron protein (alpha chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} (A:47-68,A:201-285)
Probab=21.19  E-value=30  Score=15.81  Aligned_cols=49  Identities=20%  Similarity=0.346  Sum_probs=37.9

Q ss_pred             EEECCCEECCCC-CCCCCCCCCCCEEEEECCCC-CHHHHHHHHHHHCCCCC
Q ss_conf             330111006875-40146885543599980448-96899999998089868
Q gi|254780249|r  136 FGIREHIVFPEI-NYDKVDCVLGMDISICTTTR-SDREAKYLLTLFGFPFP  184 (185)
Q Consensus       136 fGi~e~~~FPEi-~yd~~~~~~G~~Iti~Tta~-~~~ea~~Lls~~g~Pf~  184 (185)
                      +|++-...||+= .+|.+.....-.++++.... ...-|+.|-+.||+||-
T Consensus        53 ~Gi~vn~~~~~g~s~eel~~~~~A~lNIvl~~~~g~~~A~~Lee~fGiPyi  103 (107)
T 1mio_A           53 IGYHVNATLTGDATYEKVQNADKADLNLVQCHRSINYIAEMMETKYGIPWI  103 (107)
T ss_dssp             HTCEEEEEEETTCCHHHHHBTTSCSEEEESCHHHHHHHHHHHHHHHCCCEE
T ss_pred             CCCCEEEECCCCCCHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHHCCCEE
T ss_conf             599458971899877888635643389871628899999999998797646


No 18 
>>1v5v_A Aminomethyltransferase; glycine-cleavage sytem, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.50A {Pyrococcus horikoshii} (A:55-149)
Probab=20.81  E-value=28  Score=15.91  Aligned_cols=71  Identities=13%  Similarity=0.222  Sum_probs=37.9

Q ss_pred             EEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCEECCCCCCCCCCCCCCC-EEEEECCCCCHHH
Q ss_conf             899960342899999999987677520468871101577731433011100687540146885543-5999804489689
Q gi|254780249|r   93 TKVTLRGTNMYDFLDRLINMGMPRIRDFHGLNSRSFDGSGNFSFGIREHIVFPEINYDKVDCVLGM-DISICTTTRSDRE  171 (185)
Q Consensus        93 ~kvTLRg~~my~FL~kli~~vlPrikdf~g~~~~~~d~~Gn~sfGi~e~~~FPEi~yd~~~~~~G~-~Iti~Tta~~~~e  171 (185)
                      .++.++|+.+-.||+.++.-=++++..          +.+.|+.-+++.-   .+..|......|= .+-+++++...+.
T Consensus         2 g~i~v~G~da~~~L~~~~t~di~~l~~----------g~~~~t~~l~~~G---~i~~d~~v~r~~e~~~~l~~~~~~~~~   68 (95)
T 1v5v_A            2 GEIVFRGKDALKFLQYVTTNDISKPPA----------ISGTYTLVLNERG---AIKDETLVFNMGNNEYLMICDSDAFEK   68 (95)
T ss_dssp             EEEEEESTTHHHHHHHHSSSCTTSSCS----------SEEEEEEEECTTS---CEEEEEEEEEEETTEEEEEECTTTHHH
T ss_pred             EEEEEECCCHHHHHHHHCCCCCCCCCC----------CCCCEEEEEECCC---CEEEEEEEEEECCCCEECCCCHHHHHH
T ss_conf             899998699999998763127621368----------8721388884689---588866997502300000345245544


Q ss_pred             HHHHH
Q ss_conf             99999
Q gi|254780249|r  172 AKYLL  176 (185)
Q Consensus       172 a~~Ll  176 (185)
                      -..-|
T Consensus        69 ~~~~l   73 (95)
T 1v5v_A           69 LYAWF   73 (95)
T ss_dssp             HHHHH
T ss_pred             HHHCC
T ss_conf             33202


No 19 
>>2wl2_A GYRA, DNA gyrase subunit A; isomerase, aminocoumarin antibiotic, drug target, protein-ligand complex; HET: DNA SM8; 2.62A {Escherichia coli} PDB: 1ab4_A 1x75_A* (A:1-41,A:163-185)
Probab=20.42  E-value=39  Score=15.12  Aligned_cols=22  Identities=32%  Similarity=0.635  Sum_probs=15.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             2899999999987677520468871101
Q gi|254780249|r  101 NMYDFLDRLINMGMPRIRDFHGLNSRSF  128 (185)
Q Consensus       101 ~my~FL~kli~~vlPrikdf~g~~~~~~  128 (185)
                      .||--++|    +||-+||  |+++.-.
T Consensus        24 A~sVI~~R----ALPDvrD--GLKPnlL   45 (64)
T 2wl2_A           24 AMSVIVGR----ALPDVRD--GLKPNLL   45 (64)
T ss_dssp             HHHHHHHH----HCCBTTT--CCCCHHH
T ss_pred             HHHHHHHC----CCCCCCC--CCCHHHH
T ss_conf             99999842----4886213--8842898


Done!