HHsearch results for GI: 254780249 and protein with PDBid: 1mji_A

>1mji_A 50S ribosomal protein L5; ribosomal protein - 5S rRNA complex, ribosome; 2.50A {Thermus thermophilus} SCOP: d.77.1.1 PDB: 2hgj_G 2hgq_G 2hgu_G 2j01_G 2j03_G 2jl6_G 2jl8_G 2v47_G 2v49_G 2wdi_G 2wdj_G 2wdl_G 2wdn_G 2wh2_G 2wh4_G 2wrj_G 2wrl_G 2wro_G 2wrr_G 2x9s_G ...
Probab=100.00  E-value=0  Score=477.20  Aligned_cols=182  Identities=53%  Similarity=0.957  Sum_probs=179.9

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHCCCCHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCC
Q ss_conf             87561189999999999999982699822286044999974578756537899999998776538961354123764211
Q gi|254780249|r    4 CKYEPRLKKEYCLRIREAMQQEFSYKNVMQIPKIEKVVVNMGVGESIADSKKAESAAADLALITGQKPVITRARRSIAGF   83 (185)
Q Consensus         4 ~~~~pRLk~~Y~~~i~~dL~~k~~~~N~~~vPki~KIvin~gvg~a~~dkk~l~~~~~~L~~ITGqkP~~~~aKksi~~f   83 (185)
                      +.+.+|||+||+++|++||+++|+|+|+||+|+|+||+||+|+|+++.|++.++.+..+|+.||||+|++++||+||++|
T Consensus         1 ~~~~~rLk~~Y~~~i~~~L~~k~~y~N~m~vPkl~KIvvn~gvg~a~~d~k~l~~~~~~l~~ItGQkp~~tkakksia~F   80 (182)
T 1mji_A            1 MPLDVALKRKYYEEVRPELIRRFGYQNVWEVPRLEKVVINQGLGEAKEDARILEKAAQELALITGQKPAVTRAKKSISNF   80 (182)
T ss_dssp             --CCCHHHHHHHHTHHHHHHHHSCCSSGGGSCCEEEEEEEEECTTTCCCHHHHHHHHHHHHHHHTSCCEEEECCSCCCCS
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCHHHCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHH
T ss_conf             99566899999999889999985899962167565899977898112166899999999998638744788625662111


Q ss_pred             CCCCCCEEEEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCEECCCCCCCCCCCCCCCEEEEE
Q ss_conf             15589862889996034289999999998767752046887110157773143301110068754014688554359998
Q gi|254780249|r   84 KLRTGMPIGTKVTLRGTNMYDFLDRLINMGMPRIRDFHGLNSRSFDGSGNFSFGIREHIVFPEINYDKVDCVLGMDISIC  163 (185)
Q Consensus        84 kiRkG~piG~kvTLRg~~my~FL~kli~~vlPrikdf~g~~~~~~d~~Gn~sfGi~e~~~FPEi~yd~~~~~~G~~Iti~  163 (185)
                      |+|+|+|+||+|||||++||+||+||+++||||+|||+|++.++||++|||+||++||++||||+||.+++++|||||||
T Consensus        81 klRkg~piG~kvTLRg~~my~FL~kli~i~lpri~df~g~~~~sfd~~gn~s~Gi~e~~~FPEi~yd~~~~i~G~~Itiv  160 (182)
T 1mji_A           81 KLRKGMPIGLRVTLRRDRMWIFLEKLLNVALPRIRDFRGLNPNSFDGRGNYNLGLREQLIFPEITYDMVDALRGMDIAVV  160 (182)
T ss_dssp             SSSCCSEEEEEEEECHHHHHHHHHHHHHTTTTTCSSCCCBCTTCBCSSSEEEEEECSCEECSSCEECCTTTSCCEEEEEE
T ss_pred             CCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEECCCCEEEECHHHHEECCCCCCCCCCCCCCCEEEEE
T ss_conf             31379820699983788999999999997720201011355300216864654212620477624366689776159999


Q ss_pred             CCCCCHHHHHHHHHHHCCCCCC
Q ss_conf             0448968999999980898689
Q gi|254780249|r  164 TTTRSDREAKYLLTLFGFPFPK  185 (185)
Q Consensus       164 Tta~~~~ea~~Lls~~g~Pf~k  185 (185)
                      |||++++||++|||+|||||+|
T Consensus       161 Tsa~t~~ea~~Lls~~g~Pf~k  182 (182)
T 1mji_A          161 TTAETDEEARALLELLGFPFRK  182 (182)
T ss_dssp             ESCSSHHHHHHHHHHHTCCBCC
T ss_pred             ECCCCHHHHHHHHHHCCCCCCC
T ss_conf             4769989999999985997249