HHsearch results for GI: 254780249 and protein with PDBid: 3ofq_F
>3ofq_F 50S ribosomal protein L5; protein biosynthesis, ribosomes, RNA, tRNA, transfer, antibi EXIT, peptidyl, ribosomal subunit, large; 3.10A {Escherichia coli} PDB: 1p85_D 1p86_D 2awb_F 2aw4_F 2i2v_F 2j28_F 2i2t_F* 2qao_F* 2qba_F* 2qbc_F* 2qbe_F 2qbg_F 2qbi_F* 2qbk_F* 2qov_F 2qox_F 2qoz_F* 2qp1_F* 2rdo_F 2vhm_F ...
Probab=100.00 E-value=0 Score=458.44 Aligned_cols=178 Identities=57% Similarity=1.015 Sum_probs=176.4
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCC
Q ss_conf 11899999999999999826998222860449999745787565378999999987765389613541237642111558
Q gi|254780249|r 8 PRLKKEYCLRIREAMQQEFSYKNVMQIPKIEKVVVNMGVGESIADSKKAESAAADLALITGQKPVITRARRSIAGFKLRT 87 (185)
Q Consensus 8 pRLk~~Y~~~i~~dL~~k~~~~N~~~vPki~KIvin~gvg~a~~dkk~l~~~~~~L~~ITGqkP~~~~aKksi~~fkiRk 87 (185)
.||+.||+++|++||+++++|+|+|++|+|+|||||+|+|+++.|++.++.+..+|+.||||+|++++||+++++||+||
T Consensus 1 ~rL~~~Y~~~i~~~L~~k~~~~N~~~vPkl~KIvvn~gvg~a~~~~~~l~~~~~~l~~ItGqkp~~t~akksi~~fk~Rk 80 (178)
T 3ofq_F 1 AKLHDYYKDEVVKKLMTEFNYNSVMQVPRVEKITLNMGVGEAIADKKLLDNAAADLAAISGQKPLITKARKSVAGFKIRQ 80 (178)
T ss_dssp CTTSGGGGSSTTTTTSTTTTCCSSSSSCCCCCBCCCCCCSSCTTCCTTTTTTSSSHHHHCSSCCCCCCCCCCCCSSSCCS
T ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCC
T ss_conf 91079999999999999768998200562459999678882001707899999999995598146640677622113248
Q ss_pred CCEEEEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCEECCCCCCCCCCCCCCCEEEEECCCC
Q ss_conf 98628899960342899999999987677520468871101577731433011100687540146885543599980448
Q gi|254780249|r 88 GMPIGTKVTLRGTNMYDFLDRLINMGMPRIRDFHGLNSRSFDGSGNFSFGIREHIVFPEINYDKVDCVLGMDISICTTTR 167 (185)
Q Consensus 88 G~piG~kvTLRg~~my~FL~kli~~vlPrikdf~g~~~~~~d~~Gn~sfGi~e~~~FPEi~yd~~~~~~G~~Iti~Tta~ 167 (185)
|+|+||+|||||++||+||+||+++||||+|||+|++.++||+.|||+||++|+.+|||++||++++++||||||||||+
T Consensus 81 g~piG~kvTLRg~~my~FL~kli~~vlPrirdf~g~~~~~~d~~gn~sfGi~e~~~fPEi~~d~~~~i~G~~ItivTsa~ 160 (178)
T 3ofq_F 81 GYPIGCKVTLRGERMWEFFERLITIAVPRIRDFRGLSAKSFDGRGNYSMGVREQIIFPEIDYDKVDRVRGLDITITTTAK 160 (178)
T ss_dssp SSCCCCCCCBCSHHHHTTGGGTTTTSSSSCSSCSSCCCCCCCSSSCCCCCCSSCCCCSSSSTTSCCSCCCCCCCCCCSCS
T ss_pred CCCCEEEEEECCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECHHHHHCCCCCCCCCCCCCCCCEEEEEEECC
T ss_conf 98405899815386999999999986355124323455333667537644146310877555655775784599997169
Q ss_pred CHHHHHHHHHHHCCCCCC
Q ss_conf 968999999980898689
Q gi|254780249|r 168 SDREAKYLLTLFGFPFPK 185 (185)
Q Consensus 168 ~~~ea~~Lls~~g~Pf~k 185 (185)
+++||++|||+|||||+|
T Consensus 161 ~~~e~~~Lls~~g~Pf~k 178 (178)
T 3ofq_F 161 SDEEGRALLAAFDFPFRK 178 (178)
T ss_dssp CGGGHHHHTTTTTCCCCC
T ss_pred CHHHHHHHHHHCCCCCCC
T ss_conf 989999999984998569