Query gi|254780249|ref|YP_003064662.1| 50S ribosomal protein L5 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 185
No_of_seqs 126 out of 1598
Neff 5.7
Searched_HMMs 23785
Date Tue May 24 05:26:55 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780249.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1mji_A 50S ribosomal protein L 100.0 0 0 477.2 20.1 182 4-185 1-182 (182)
2 3bbo_H Ribosomal protein L5; l 100.0 0 0 465.3 12.4 184 2-185 11-194 (220)
3 1iq4_A 50S ribosomal protein L 100.0 0 0 455.3 20.8 179 7-185 1-179 (179)
4 3ofq_F 50S ribosomal protein L 100.0 0 0 458.4 -9.3 178 8-185 1-178 (178)
5 1vq8_D 50S ribosomal protein L 100.0 0 0 350.9 5.9 153 21-184 3-155 (177)
6 2noq_H 60S ribosomal protein L 100.0 0 0 320.2 -8.7 129 30-168 1-129 (165)
7 2rf4_B DNA-directed RNA polyme 39.9 13 0.00054 17.0 2.1 45 83-127 12-78 (87)
8 1qys_A TOP7; alpha-beta, novel 27.4 31 0.0013 14.8 3.1 19 159-177 47-65 (106)
9 2jvf_A De novo protein M7; tet 26.6 32 0.0014 14.7 3.1 21 158-178 48-68 (96)
10 1yx2_A Aminomethyltransferase; 16.1 46 0.0019 13.8 1.3 28 86-113 189-218 (365)
No 1
>1mji_A 50S ribosomal protein L5; ribosomal protein - 5S rRNA complex, ribosome; 2.50A {Thermus thermophilus} SCOP: d.77.1.1 PDB: 2hgj_G 2hgq_G 2hgu_G 2j01_G 2j03_G 2jl6_G 2jl8_G 2v47_G 2v49_G 2wdi_G 2wdj_G 2wdl_G 2wdn_G 2wh2_G 2wh4_G 2wrj_G 2wrl_G 2wro_G 2wrr_G 2x9s_G ...
Probab=100.00 E-value=0 Score=477.20 Aligned_cols=182 Identities=53% Similarity=0.957 Sum_probs=179.9
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCCCHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCC
Q ss_conf 87561189999999999999982699822286044999974578756537899999998776538961354123764211
Q gi|254780249|r 4 CKYEPRLKKEYCLRIREAMQQEFSYKNVMQIPKIEKVVVNMGVGESIADSKKAESAAADLALITGQKPVITRARRSIAGF 83 (185)
Q Consensus 4 ~~~~pRLk~~Y~~~i~~dL~~k~~~~N~~~vPki~KIvin~gvg~a~~dkk~l~~~~~~L~~ITGqkP~~~~aKksi~~f 83 (185)
+.+.+|||+||+++|++||+++|+|+|+||+|+|+||+||+|+|+++.|++.++.+..+|+.||||+|++++||+||++|
T Consensus 1 ~~~~~rLk~~Y~~~i~~~L~~k~~y~N~m~vPkl~KIvvn~gvg~a~~d~k~l~~~~~~l~~ItGQkp~~tkakksia~F 80 (182)
T 1mji_A 1 MPLDVALKRKYYEEVRPELIRRFGYQNVWEVPRLEKVVINQGLGEAKEDARILEKAAQELALITGQKPAVTRAKKSISNF 80 (182)
T ss_dssp --CCCHHHHHHHHTHHHHHHHHSCCSSGGGSCCEEEEEEEEECTTTCCCHHHHHHHHHHHHHHHTSCCEEEECCSCCCCS
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCHHHCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHH
T ss_conf 99566899999999889999985899962167565899977898112166899999999998638744788625662111
Q ss_pred CCCCCCEEEEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCEECCCCCCCCCCCCCCCEEEEE
Q ss_conf 15589862889996034289999999998767752046887110157773143301110068754014688554359998
Q gi|254780249|r 84 KLRTGMPIGTKVTLRGTNMYDFLDRLINMGMPRIRDFHGLNSRSFDGSGNFSFGIREHIVFPEINYDKVDCVLGMDISIC 163 (185)
Q Consensus 84 kiRkG~piG~kvTLRg~~my~FL~kli~~vlPrikdf~g~~~~~~d~~Gn~sfGi~e~~~FPEi~yd~~~~~~G~~Iti~ 163 (185)
|+|+|+|+||+|||||++||+||+||+++||||+|||+|++.++||++|||+||++||++||||+||.+++++|||||||
T Consensus 81 klRkg~piG~kvTLRg~~my~FL~kli~i~lpri~df~g~~~~sfd~~gn~s~Gi~e~~~FPEi~yd~~~~i~G~~Itiv 160 (182)
T 1mji_A 81 KLRKGMPIGLRVTLRRDRMWIFLEKLLNVALPRIRDFRGLNPNSFDGRGNYNLGLREQLIFPEITYDMVDALRGMDIAVV 160 (182)
T ss_dssp SSSCCSEEEEEEEECHHHHHHHHHHHHHTTTTTCSSCCCBCTTCBCSSSEEEEEECSCEECSSCEECCTTTSCCEEEEEE
T ss_pred CCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEECCCCEEEECHHHHEECCCCCCCCCCCCCCCEEEEE
T ss_conf 31379820699983788999999999997720201011355300216864654212620477624366689776159999
Q ss_pred CCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 0448968999999980898689
Q gi|254780249|r 164 TTTRSDREAKYLLTLFGFPFPK 185 (185)
Q Consensus 164 Tta~~~~ea~~Lls~~g~Pf~k 185 (185)
|||++++||++|||+|||||+|
T Consensus 161 Tsa~t~~ea~~Lls~~g~Pf~k 182 (182)
T 1mji_A 161 TTAETDEEARALLELLGFPFRK 182 (182)
T ss_dssp ESCSSHHHHHHHHHHHTCCBCC
T ss_pred ECCCCHHHHHHHHHHCCCCCCC
T ss_conf 4769989999999985997249
No 2
>3bbo_H Ribosomal protein L5; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.2
Probab=100.00 E-value=0 Score=465.35 Aligned_cols=184 Identities=50% Similarity=0.874 Sum_probs=181.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCC
Q ss_conf 98875611899999999999999826998222860449999745787565378999999987765389613541237642
Q gi|254780249|r 2 VDCKYEPRLKKEYCLRIREAMQQEFSYKNVMQIPKIEKVVVNMGVGESIADSKKAESAAADLALITGQKPVITRARRSIA 81 (185)
Q Consensus 2 ~~~~~~pRLk~~Y~~~i~~dL~~k~~~~N~~~vPki~KIvin~gvg~a~~dkk~l~~~~~~L~~ITGqkP~~~~aKksi~ 81 (185)
++..|++|||.||+++|+++|+++|+|+|+|++|+|+||+||+|+|+++.|++.++.+..+|+.||||+|+.++||+||+
T Consensus 11 ~~~~~m~rLk~~Y~~~v~~~L~~k~~y~Nim~vPkl~KIvvn~gvg~~~~d~k~l~~a~~~L~~ITGQkp~~tkakksia 90 (220)
T 3bbo_H 11 AEAETINRLKTNYIEKMVPLLKEEFSYSNILEVPKVVKIVVNCGIGDASQNAKGLDAAINELALITGQRPVKTKAKTSIA 90 (220)
T ss_dssp -------CHHHHHTTTHHHHHHHSSCCCCSSSSCCEEEEECCCCCCCSSCCHHHHHHHHHHHHHHTCSCCCCCBCCSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCHHCCHHHHHHHHHHHHHHCCCCCEECCCCCCCC
T ss_conf 66435378899999999999999858998731676669998678881110627899999999977379753145655530
Q ss_pred CCCCCCCCEEEEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCEECCCCCCCCCCCCCCCEEE
Q ss_conf 11155898628899960342899999999987677520468871101577731433011100687540146885543599
Q gi|254780249|r 82 GFKLRTGMPIGTKVTLRGTNMYDFLDRLINMGMPRIRDFHGLNSRSFDGSGNFSFGIREHIVFPEINYDKVDCVLGMDIS 161 (185)
Q Consensus 82 ~fkiRkG~piG~kvTLRg~~my~FL~kli~~vlPrikdf~g~~~~~~d~~Gn~sfGi~e~~~FPEi~yd~~~~~~G~~It 161 (185)
+||+|+|+|+||+|||||++||+||+||+++||||+|||+|++.++||+.|||+||++|+++||||+||.|++++|||||
T Consensus 91 ~FklRkG~piG~kVTLRg~~my~FL~kLi~ivlPrirdf~Gi~~~sfd~~gN~sfGi~e~~~FPEi~~d~f~~i~G~nIt 170 (220)
T 3bbo_H 91 GFKVREGMTLGIAVTLRGNLMYSFLDRLINLALPRTRDFQGVNPNSFDGHGNYSVGFREQSVFPEIKPEIVGKARGMDVC 170 (220)
T ss_dssp SSCCCTTCBCCCCCEECTHHHHHHHHHHHHSSTTTSSSCCCCCCSCCCSSSEEEEEECSCCCCSSCCTTSCSSCCCEEEE
T ss_pred CCCCCCCCEEEEEEEECHHHHHHHHHHHHHHHCHHCCCCCCCCCCCCCCCCCEEECCCHHHCCCCCCCCCCCCCCCCEEE
T ss_conf 00124897347899877077999999999973400001456764345688850102203210888674334675785389
Q ss_pred EECCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 980448968999999980898689
Q gi|254780249|r 162 ICTTTRSDREAKYLLTLFGFPFPK 185 (185)
Q Consensus 162 i~Tta~~~~ea~~Lls~~g~Pf~k 185 (185)
|||||+|++||++|||+|||||+|
T Consensus 171 IvTtA~t~~ea~~LLs~~g~Pf~k 194 (220)
T 3bbo_H 171 ITTTAKTDKEAYKLLSLMGMPFRE 194 (220)
T ss_dssp EEESCSSGGGTHHHHHTTTCCC--
T ss_pred EEECCCCHHHHHHHHHHCCCCEEC
T ss_conf 995469979999999986998617
No 3
>1iq4_A 50S ribosomal protein L5; rRNA-binding, RNP motif, RNA binding protein; 1.80A {Geobacillus stearothermophilus} SCOP: d.77.1.1
Probab=100.00 E-value=0 Score=455.34 Aligned_cols=179 Identities=56% Similarity=1.023 Sum_probs=177.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCCHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCC
Q ss_conf 61189999999999999982699822286044999974578756537899999998776538961354123764211155
Q gi|254780249|r 7 EPRLKKEYCLRIREAMQQEFSYKNVMQIPKIEKVVVNMGVGESIADSKKAESAAADLALITGQKPVITRARRSIAGFKLR 86 (185)
Q Consensus 7 ~pRLk~~Y~~~i~~dL~~k~~~~N~~~vPki~KIvin~gvg~a~~dkk~l~~~~~~L~~ITGqkP~~~~aKksi~~fkiR 86 (185)
.+|||+||+++|++||+++++|+|+|++|+|+||+||+|+|+++.|++.++.+..+|+.||||+|++++||++|++||+|
T Consensus 1 M~rLk~~Y~~~v~~dL~~k~~~~N~~~vP~l~KIvvn~gv~~~~~~~~~l~~~~~~l~~ItGQkp~~t~akksi~~fklR 80 (179)
T 1iq4_A 1 MNRLKEKYLNEVVPALMSKFNYKSIMQVPKIEKIVINMGVGDAVQNPKALDSAVEELTLIAGQRPVVTRAKKSIAGFRLR 80 (179)
T ss_dssp CCHHHHHHHHTHHHHHHHHHCCSSGGGSCCEEEEEEEEECSCSSSCHHHHHHHHHHHHHHHSSCCEEEECCSCSCSSSCC
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCHHHCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCC
T ss_conf 91789999999999999986899820056145999978887222176799999999998708851477657653345425
Q ss_pred CCCEEEEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCEECCCCCCCCCCCCCCCEEEEECCC
Q ss_conf 89862889996034289999999998767752046887110157773143301110068754014688554359998044
Q gi|254780249|r 87 TGMPIGTKVTLRGTNMYDFLDRLINMGMPRIRDFHGLNSRSFDGSGNFSFGIREHIVFPEINYDKVDCVLGMDISICTTT 166 (185)
Q Consensus 87 kG~piG~kvTLRg~~my~FL~kli~~vlPrikdf~g~~~~~~d~~Gn~sfGi~e~~~FPEi~yd~~~~~~G~~Iti~Tta 166 (185)
||+|+||+|||||++||+||+||+++|+||+|||+|++.++||+.||++||++|+++|||++||++++++||||||||||
T Consensus 81 kg~~iG~kvTLRg~~m~~FL~kli~ivlP~ikdf~g~~~~~~d~~gn~sfGi~e~~~fPei~~d~~~~i~G~~ItivTsa 160 (179)
T 1iq4_A 81 QGMPIGAKVTLRGERMYEFLDKLISVSLPRARDFRGVSKKSFDGRGNYTLGIKEQLIFPEIDYDKVNKVRGMDIVIVTTA 160 (179)
T ss_dssp TTCEEEEEEEECHHHHHHHHHHHHHTTGGGSTTCCCBCSSCBCSSSEEEEEESCGGGSTTCCGGGSSCCCCEEEEEEESC
T ss_pred CCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCCCCHHEECCCCCCCCCCCCCCCEEEEEECC
T ss_conf 89845899997501299999999997635642114686321258885032500410477644366689776249999577
Q ss_pred CCHHHHHHHHHHHCCCCCC
Q ss_conf 8968999999980898689
Q gi|254780249|r 167 RSDREAKYLLTLFGFPFPK 185 (185)
Q Consensus 167 ~~~~ea~~Lls~~g~Pf~k 185 (185)
++++||++|||+|||||+|
T Consensus 161 ~~~~ea~~Lls~~g~Pf~k 179 (179)
T 1iq4_A 161 NTDEEARELLALLGMPFQK 179 (179)
T ss_dssp SSHHHHHHHHHHHTCCBCC
T ss_pred CCHHHHHHHHHHCCCCCCC
T ss_conf 9979999999985997169
No 4
>3ofq_F 50S ribosomal protein L5; protein biosynthesis, ribosomes, RNA, tRNA, transfer, antibi EXIT, peptidyl, ribosomal subunit, large; 3.10A {Escherichia coli} PDB: 1p85_D 1p86_D 2awb_F 2aw4_F 2i2v_F 2j28_F 2i2t_F* 2qao_F* 2qba_F* 2qbc_F* 2qbe_F 2qbg_F 2qbi_F* 2qbk_F* 2qov_F 2qox_F 2qoz_F* 2qp1_F* 2rdo_F 2vhm_F ...
Probab=100.00 E-value=0 Score=458.44 Aligned_cols=178 Identities=57% Similarity=1.015 Sum_probs=176.4
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCC
Q ss_conf 11899999999999999826998222860449999745787565378999999987765389613541237642111558
Q gi|254780249|r 8 PRLKKEYCLRIREAMQQEFSYKNVMQIPKIEKVVVNMGVGESIADSKKAESAAADLALITGQKPVITRARRSIAGFKLRT 87 (185)
Q Consensus 8 pRLk~~Y~~~i~~dL~~k~~~~N~~~vPki~KIvin~gvg~a~~dkk~l~~~~~~L~~ITGqkP~~~~aKksi~~fkiRk 87 (185)
.||+.||+++|++||+++++|+|+|++|+|+|||||+|+|+++.|++.++.+..+|+.||||+|++++||+++++||+||
T Consensus 1 ~rL~~~Y~~~i~~~L~~k~~~~N~~~vPkl~KIvvn~gvg~a~~~~~~l~~~~~~l~~ItGqkp~~t~akksi~~fk~Rk 80 (178)
T 3ofq_F 1 AKLHDYYKDEVVKKLMTEFNYNSVMQVPRVEKITLNMGVGEAIADKKLLDNAAADLAAISGQKPLITKARKSVAGFKIRQ 80 (178)
T ss_dssp CTTSGGGGSSTTTTTSTTTTCCSSSSSCCCCCBCCCCCCSSCTTCCTTTTTTSSSHHHHCSSCCCCCCCCCCCCSSSCCS
T ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCC
T ss_conf 91079999999999999768998200562459999678882001707899999999995598146640677622113248
Q ss_pred CCEEEEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCEECCCCCCCCCCCCCCCEEEEECCCC
Q ss_conf 98628899960342899999999987677520468871101577731433011100687540146885543599980448
Q gi|254780249|r 88 GMPIGTKVTLRGTNMYDFLDRLINMGMPRIRDFHGLNSRSFDGSGNFSFGIREHIVFPEINYDKVDCVLGMDISICTTTR 167 (185)
Q Consensus 88 G~piG~kvTLRg~~my~FL~kli~~vlPrikdf~g~~~~~~d~~Gn~sfGi~e~~~FPEi~yd~~~~~~G~~Iti~Tta~ 167 (185)
|+|+||+|||||++||+||+||+++||||+|||+|++.++||+.|||+||++|+.+|||++||++++++||||||||||+
T Consensus 81 g~piG~kvTLRg~~my~FL~kli~~vlPrirdf~g~~~~~~d~~gn~sfGi~e~~~fPEi~~d~~~~i~G~~ItivTsa~ 160 (178)
T 3ofq_F 81 GYPIGCKVTLRGERMWEFFERLITIAVPRIRDFRGLSAKSFDGRGNYSMGVREQIIFPEIDYDKVDRVRGLDITITTTAK 160 (178)
T ss_dssp SSCCCCCCCBCSHHHHTTGGGTTTTSSSSCSSCSSCCCCCCCSSSCCCCCCSSCCCCSSSSTTSCCSCCCCCCCCCCSCS
T ss_pred CCCCEEEEEECCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECHHHHHCCCCCCCCCCCCCCCCEEEEEEECC
T ss_conf 98405899815386999999999986355124323455333667537644146310877555655775784599997169
Q ss_pred CHHHHHHHHHHHCCCCCC
Q ss_conf 968999999980898689
Q gi|254780249|r 168 SDREAKYLLTLFGFPFPK 185 (185)
Q Consensus 168 ~~~ea~~Lls~~g~Pf~k 185 (185)
+++||++|||+|||||+|
T Consensus 161 ~~~e~~~Lls~~g~Pf~k 178 (178)
T 3ofq_F 161 SDEEGRALLAAFDFPFRK 178 (178)
T ss_dssp CGGGHHHHTTTTTCCCCC
T ss_pred CHHHHHHHHHHCCCCCCC
T ss_conf 989999999984998569
No 5
>1vq8_D 50S ribosomal protein L5P; ribosome 50S, protein-protein complex, RNA-RNA complex, protein-RNA complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.77.1.1 PDB: 1vq4_D* 1vq5_D* 1vq6_D* 1vq7_D* 1s72_D* 1vq9_D* 1vqk_D* 1vql_D* 1vqm_D* 1vqn_D* 1vqo_D* 1vqp_D* 1yhq_D* 1yi2_D* 1yij_D* 1yit_D* 1yj9_D* 1yjn_D* 1yjw_D* 2otj_D* ...
Probab=100.00 E-value=0 Score=350.91 Aligned_cols=153 Identities=37% Similarity=0.539 Sum_probs=144.4
Q ss_pred HHHHHHCCCCHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCEEEEEEEEECC
Q ss_conf 99998269982228604499997457875653789999999877653896135412376421115589862889996034
Q gi|254780249|r 21 AMQQEFSYKNVMQIPKIEKVVVNMGVGESIADSKKAESAAADLALITGQKPVITRARRSIAGFKLRTGMPIGTKVTLRGT 100 (185)
Q Consensus 21 dL~~k~~~~N~~~vPki~KIvin~gvg~a~~dkk~l~~~~~~L~~ITGqkP~~~~aKksi~~fkiRkG~piG~kvTLRg~ 100 (185)
...++++|+|+|++|+|+|||||+|+|+++++ +..+..+|+.||||+|+.++||++|++||||+|+|+||+|||||+
T Consensus 3 ~~~~~~~~~~~M~vPkI~KIvvN~Gvg~a~~~---l~~a~~~L~~ITGQkP~~t~AKksia~FklRkG~pIG~kVTLRg~ 79 (177)
T 1vq8_D 3 SESESGGDFHEMREPRIEKVVVHMGIGHGGRD---LANAEDILGEITGQMPVRTKAKRTVGEFDIREGDPIGAKVTLRDE 79 (177)
T ss_dssp --------CCTTTSCEEEEEEEEEECCC--------CTTHHHHHHHTSSCCEEEECCSCBTTTBCCSSSEEEEEEEECTH
T ss_pred CHHHHHCCCCCCCCCEEEEEEEECCCCHHHHH---HHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCEEEEEEEEEHH
T ss_conf 12232078998568467799997588833560---999999999971995050104566554010279825899997388
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCEECCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHC
Q ss_conf 28999999999876775204688711015777314330111006875401468855435999804489689999999808
Q gi|254780249|r 101 NMYDFLDRLINMGMPRIRDFHGLNSRSFDGSGNFSFGIREHIVFPEINYDKVDCVLGMDISICTTTRSDREAKYLLTLFG 180 (185)
Q Consensus 101 ~my~FL~kli~~vlPrikdf~g~~~~~~d~~Gn~sfGi~e~~~FPEi~yd~~~~~~G~~Iti~Tta~~~~ea~~Lls~~g 180 (185)
+||+||++|+++++|++ ++||++|||+|||+||++|||++||++.+++||||||+|++.++.+|+.+++..+
T Consensus 80 ~m~~FL~kll~~v~~~~--------k~FD~~GN~sfGi~e~~~FPei~~d~~~~i~GmdIti~t~~~g~r~a~r~~~~~~ 151 (177)
T 1vq8_D 80 MAEEFLQTALPLAELAT--------SQFDDTGNFSFGVEEHTEFPSQEYDPSIGIYGLDVTVNLVRPGYRVAKRDKASRS 151 (177)
T ss_dssp HHHHHHHHHGGGSCCCG--------GGBCSSSCEEEC--------------------CEEEEEEECGGGGGGTSSTTCCC
T ss_pred HHHHHHHHHHHHCCCCC--------CCCCCCCEEEECCHHHHCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHC
T ss_conf 89999999852248885--------4548986488782788336644204667720117999958898089999999736
Q ss_pred CCCC
Q ss_conf 9868
Q gi|254780249|r 181 FPFP 184 (185)
Q Consensus 181 ~Pf~ 184 (185)
+||+
T Consensus 152 ip~~ 155 (177)
T 1vq8_D 152 IPTK 155 (177)
T ss_dssp CCGG
T ss_pred CCCC
T ss_conf 9854
No 6
>2noq_H 60S ribosomal protein L11-B; IRES RNA, ribosome, translation, internal initiation; 7.30A {Saccharomyces cerevisiae} PDB: 1s1i_J 3jyw_J 2zkr_d
Probab=100.00 E-value=0 Score=320.23 Aligned_cols=129 Identities=37% Similarity=0.578 Sum_probs=123.2
Q ss_pred CHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCEEEEEEEEECCHHHHHHHHH
Q ss_conf 82228604499997457875653789999999877653896135412376421115589862889996034289999999
Q gi|254780249|r 30 NVMQIPKIEKVVVNMGVGESIADSKKAESAAADLALITGQKPVITRARRSIAGFKLRTGMPIGTKVTLRGTNMYDFLDRL 109 (185)
Q Consensus 30 N~~~vPki~KIvin~gvg~a~~dkk~l~~~~~~L~~ITGqkP~~~~aKksi~~fkiRkG~piG~kvTLRg~~my~FL~kl 109 (185)
|+||+|+|+|||||+|+|++++ .++.+..+|+.||||+|++++||+||++||||+|+|+||+|||||++||+||+||
T Consensus 1 N~M~~Pki~KIvln~GvGe~~~---~l~~a~~~L~~ITGQkP~~t~AKksia~FkiRkG~piG~kVTLRg~~m~~FL~kl 77 (165)
T 2noq_H 1 NPMRDLKIEKLVLNISVGESGD---RLTRASKVLEQLSGQTPVQSKARYTVRTFGIRRNEKIAVHVTVRGPKAEEILERG 77 (165)
T ss_dssp CTTTSCEEECCCCCCCSSCSSS---SSSCSSSTTSSSSSCCCCCCCCCCCCSSSCCCSSCCCCCCCCCCSSSSSSSSSSS
T ss_pred CCCCCCEEEEEEEECCCCCCHH---HHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCEEEEEEEECHHHHHHHHHHH
T ss_conf 9977746449999778572077---7999999999972996155517765422146799837999997338999999999
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCEECCCCCCCCCCCCCCCEEEEECCCCC
Q ss_conf 99876775204688711015777314330111006875401468855435999804489
Q gi|254780249|r 110 INMGMPRIRDFHGLNSRSFDGSGNFSFGIREHIVFPEINYDKVDCVLGMDISICTTTRS 168 (185)
Q Consensus 110 i~~vlPrikdf~g~~~~~~d~~Gn~sfGi~e~~~FPEi~yd~~~~~~G~~Iti~Tta~~ 168 (185)
+++++||||| ++||++|||||||+||+ |||++||+..+++||||+|+|+...
T Consensus 78 i~i~~prird------~~fD~~GN~sfGi~e~i-~~~i~yd~~~~i~Gmdi~iv~~rpG 129 (165)
T 2noq_H 78 LKVKEYQLRD------RNFSATGNFGFGIDEHI-DLGIKYDPSIGIFGMDFYVVMNRPG 129 (165)
T ss_dssp SSSSCTTCSS------TTSCTTSCCCCCCCCSC-CCSSSSCCCCCCSTTTCCCEEECSS
T ss_pred HHHCCCEECC------CCCCCCCCEEECCHHHH-CCCCCCCCCCCEEEEEEEEEECCCC
T ss_conf 8421570032------23279851632728884-1676615517873478999954886
No 7
>2rf4_B DNA-directed RNA polymerase I subunit RPA4; transferase DNA/RNA, DNA-binding, phosphorylation, POL I, POLI, rpoli, nuclear protein; 3.10A {Saccharomyces cerevisiae}
Probab=39.90 E-value=13 Score=17.04 Aligned_cols=45 Identities=27% Similarity=0.479 Sum_probs=29.1
Q ss_pred CCCCCCCEEEEEEE-----EECCHHHHHHHHHHHH----------------HHHHH-HHCCCCCCCC
Q ss_conf 11558986288999-----6034289999999998----------------76775-2046887110
Q gi|254780249|r 83 FKLRTGMPIGTKVT-----LRGTNMYDFLDRLINM----------------GMPRI-RDFHGLNSRS 127 (185)
Q Consensus 83 fkiRkG~piG~kvT-----LRg~~my~FL~kli~~----------------vlPri-kdf~g~~~~~ 127 (185)
+..--+.||-++++ +-.+.|..||+++|.- -|-|+ |||+|+++..
T Consensus 12 ~~~~Ln~PVV~H~~g~PqhvS~de~LqFL~~FI~eKE~~~~~Dt~lssaLaQLKRvqRDFKGLPPa~ 78 (87)
T 2rf4_B 12 TATTLNTPVVIHATQLPQHVSTDEVLQFLESFIDEKENIIDIDTNLSSSISQLKRIQRDFKGLPPAQ 78 (87)
T ss_dssp ----CCCCCEEEESSCCEECCHHHHHHHHHHHHHHHHSSSCCCTTHHHHHHHHHHHHHHHHHSCC--
T ss_pred CCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 6654788868852789752589999999999998766542000034578999999987505899722
No 8
>1qys_A TOP7; alpha-beta, novel fold, de novo protein; 2.50A {Computationally designed sequence} SCOP: k.41.1.1
Probab=27.35 E-value=31 Score=14.80 Aligned_cols=19 Identities=26% Similarity=0.441 Sum_probs=7.8
Q ss_pred EEEEECCCCCHHHHHHHHH
Q ss_conf 5999804489689999999
Q gi|254780249|r 159 DISICTTTRSDREAKYLLT 177 (185)
Q Consensus 159 ~Iti~Tta~~~~ea~~Lls 177 (185)
++.|..||.++++|..|+.
T Consensus 47 ~V~IsIsA~~~~qA~~~~~ 65 (106)
T 1qys_A 47 RVRISITARTKKEAEKFAA 65 (106)
T ss_dssp EEEEEEECSSHHHHHHHHH
T ss_pred EEEEEEEECCHHHHHHHHH
T ss_conf 5899999666788999999
No 9
>2jvf_A De novo protein M7; tetrapeptide fragment-based protein design, artificial fold; NMR {Unidentified} SCOP: k.41.1.1
Probab=26.58 E-value=32 Score=14.71 Aligned_cols=21 Identities=33% Similarity=0.504 Sum_probs=11.7
Q ss_pred CEEEEECCCCCHHHHHHHHHH
Q ss_conf 359998044896899999998
Q gi|254780249|r 158 MDISICTTTRSDREAKYLLTL 178 (185)
Q Consensus 158 ~~Iti~Tta~~~~ea~~Lls~ 178 (185)
-++.|..||.++++|..|+..
T Consensus 48 r~V~IsIsA~~~~qA~~~~~i 68 (96)
T 2jvf_A 48 RNVQITISAENDEQAKELLEL 68 (96)
T ss_dssp SEEEEEEECSSHHHHHHHHHH
T ss_pred CEEEEEEEECCHHHHHHHHHH
T ss_conf 448999996566789999999
No 10
>1yx2_A Aminomethyltransferase; glycine cleavage system T protein, alpha-beta, beta-barrel, structural genomics, PSI, protein structure initiative; 2.08A {Bacillus subtilis}
Probab=16.06 E-value=46 Score=13.81 Aligned_cols=28 Identities=25% Similarity=0.478 Sum_probs=19.2
Q ss_pred CCCC--EEEEEEEEECCHHHHHHHHHHHHH
Q ss_conf 5898--628899960342899999999987
Q gi|254780249|r 86 RTGM--PIGTKVTLRGTNMYDFLDRLINMG 113 (185)
Q Consensus 86 RkG~--piG~kvTLRg~~my~FL~kli~~v 113 (185)
|-|. -.|.-+-...+.+..+.++|+...
T Consensus 189 R~g~tGe~G~el~~~~~~~~~l~~~l~~aG 218 (365)
T 1yx2_A 189 RTGYTGEDGYEIYCRSDDAMHIWKKIIDAG 218 (365)
T ss_dssp SCCSSSSSEEEEEEEGGGHHHHHHHHHHHH
T ss_pred ECCCCCCCEEEECCCHHHHHHHHHHHHHCC
T ss_conf 467678873474167899999999999612
Done!