HHSEARCH alignment of GI: 254780249 and SCOP domain: d1mjia_

Alignment
>d1mjia_ d.77.1.1 (A:) Ribosomal protein L5 {Thermus thermophilus [TaxId: 274]}
Probab=100.00  E-value=0  Score=476.25  Aligned_cols=180  Identities=53%  Similarity=0.970  Sum_probs=177.9

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHCCCCHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCC
Q ss_conf             56118999999999999998269982228604499997457875653789999999877653896135412376421115
Q gi|254780249|r    6 YEPRLKKEYCLRIREAMQQEFSYKNVMQIPKIEKVVVNMGVGESIADSKKAESAAADLALITGQKPVITRARRSIAGFKL   85 (185)
Q Consensus         6 ~~pRLk~~Y~~~i~~dL~~k~~~~N~~~vPki~KIvin~gvg~a~~dkk~l~~~~~~L~~ITGqkP~~~~aKksi~~fki   85 (185)
                      +..|||++|+++|+++|+++++|+|+||+|+|+|||||+|+|+|+.|++.++.+..+|+.||||+|++++||+||++||+
T Consensus         1 ~~~rLk~~Y~~~i~~~L~~k~~~~N~m~vPkl~KIvvn~gvg~a~~d~k~l~~~~~~L~~ItGQkp~~t~akksia~Fkl   80 (180)
T d1mjia_           1 LDVALKRKYYEEVRPELIRRFGYQNVWEVPRLEKVVINQGLGEAKEDARILEKAAQELALITGQKPAVTRAKKSISNFKL   80 (180)
T ss_dssp             CCCHHHHHHHHTHHHHHHHHSCCSSGGGSCCEEEEEEEEECTTTCCCHHHHHHHHHHHHHHHTSCCEEEECCSCCCCSSS
T ss_pred             CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCEE
T ss_conf             97378999999999999998489983005635699997888820016578999999887531513799862665665043


Q ss_pred             CCCCEEEEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCEECCCCCCCCCCCCCCCEEEEECC
Q ss_conf             58986288999603428999999999876775204688711015777314330111006875401468855435999804
Q gi|254780249|r   86 RTGMPIGTKVTLRGTNMYDFLDRLINMGMPRIRDFHGLNSRSFDGSGNFSFGIREHIVFPEINYDKVDCVLGMDISICTT  165 (185)
Q Consensus        86 RkG~piG~kvTLRg~~my~FL~kli~~vlPrikdf~g~~~~~~d~~Gn~sfGi~e~~~FPEi~yd~~~~~~G~~Iti~Tt  165 (185)
                      |+|+|+||+|||||++||+||+||+++||||||||+|++.++||+.|||+||++||++|||++||++++++|||||||||
T Consensus        81 Rkg~piG~kvTLRg~~m~~FL~rli~i~lprirdf~g~~~~sfd~~Gn~sfGi~e~~~FPEi~~d~~~~i~G~~ItivTt  160 (180)
T d1mjia_          81 RKGMPIGLRVTLRRDRMWIFLEKLLNVALPRIRDFRGLNPNSFDGRGNYNLGLREQLIFPEITYDMVDALRGMDIAVVTT  160 (180)
T ss_dssp             SCCSEEEEEEEECHHHHHHHHHHHHHTTTTTCSSCCCBCTTCBCSSSEEEEEECSCEECSSCEECCTTTSCCEEEEEEES
T ss_pred             ECCCCEEEEEEECHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCEEEEECCHHEEECCCCCCCCCCCCCCCEEEEEEC
T ss_conf             04982258986317779999999999775320024667820036751687433230333544435446847626999947


Q ss_pred             CCCHHHHHHHHHHHCCCCCC
Q ss_conf             48968999999980898689
Q gi|254780249|r  166 TRSDREAKYLLTLFGFPFPK  185 (185)
Q Consensus       166 a~~~~ea~~Lls~~g~Pf~k  185 (185)
                      |++++||++|||+|||||+|
T Consensus       161 a~~~~ea~~Lls~~g~Pf~~  180 (180)
T d1mjia_         161 AETDEEARALLELLGFPFRK  180 (180)
T ss_dssp             CSSHHHHHHHHHHHTCCBCC
T ss_pred             CCCHHHHHHHHHHCCCCCCC
T ss_conf             69979999999986998459


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: RL5-like
superfamily: RL5-like
family: Ribosomal protein L5
domain: Ribosomal protein L5
species: Thermus thermophilus [TaxId: 274]