HHSEARCH alignment of GI: 254780249 and SCOP domain: d2gycd1

Alignment
>d2gycd1 d.77.1.1 (D:2-178) Ribosomal protein L5 {Escherichia coli [TaxId: 562]}
Probab=100.00  E-value=0  Score=470.30  Aligned_cols=177  Identities=58%  Similarity=1.020  Sum_probs=175.8

Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCC
Q ss_conf             18999999999999998269982228604499997457875653789999999877653896135412376421115589
Q gi|254780249|r    9 RLKKEYCLRIREAMQQEFSYKNVMQIPKIEKVVVNMGVGESIADSKKAESAAADLALITGQKPVITRARRSIAGFKLRTG   88 (185)
Q Consensus         9 RLk~~Y~~~i~~dL~~k~~~~N~~~vPki~KIvin~gvg~a~~dkk~l~~~~~~L~~ITGqkP~~~~aKksi~~fkiRkG   88 (185)
                      ||++||+++|+++|+++++|+|+|++|+|+|||||+|+|+|+.|++.++.+..+|+.||||+|+.++||+||++||+|+|
T Consensus         1 RLk~~Y~~~i~~~L~~k~~~~N~~~vPki~KIvvn~gvg~a~~d~~~l~~~~~~L~~ItGQkp~~tkakksi~~fklRkg   80 (177)
T d2gycd1           1 KLHDYYKDEVVKKLMTEFNYNSVMQVPRVEKITLNMGVGEAIADKKLLDNAAADLAAISGQKPLITKARKSVAGFKIRQG   80 (177)
T ss_dssp             CTTSSTTTTTTTSTTTTTCCSCSSSCCCCCCCCCCCCCCTTTCSSCSTTTSSSSTTTSSSSCCCCCCCCSCCCSSSCCSS
T ss_pred             CHHHHHHHHHHHHHHHHHCCCCHHHCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCC
T ss_conf             92799999999999997489980016704699996678644456288899999988763143478732610022243479


Q ss_pred             CEEEEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCEECCCCCCCCCCCCCCCEEEEECCCCC
Q ss_conf             86288999603428999999999876775204688711015777314330111006875401468855435999804489
Q gi|254780249|r   89 MPIGTKVTLRGTNMYDFLDRLINMGMPRIRDFHGLNSRSFDGSGNFSFGIREHIVFPEINYDKVDCVLGMDISICTTTRS  168 (185)
Q Consensus        89 ~piG~kvTLRg~~my~FL~kli~~vlPrikdf~g~~~~~~d~~Gn~sfGi~e~~~FPEi~yd~~~~~~G~~Iti~Tta~~  168 (185)
                      +|+||+|||||++||+||+||+++||||||||+|++.++||+.|||+||++|+++|||++||++++++||||||||||++
T Consensus        81 ~piG~kvTLRg~~m~~FL~kli~~vlprirdf~g~~~~sfd~~gn~sfGi~e~~~FPEi~~d~~~~i~G~~ItivTsa~~  160 (177)
T d2gycd1          81 YPIGCKVTLRGERMWEFFERLITIAVPRIRDFRGLSAKSFDGRGNYSMGVREQIIFPEIDYDKVDRVRGLDITITTTAKS  160 (177)
T ss_dssp             CCCCCCCCCCSSCTTTTTTSSSSSSTTCSSSCCCBCCCCCSSSSCCCCCCCSCCCCTTSCSSSCCSCCCCCCCCCCCCSS
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCEEEECHHHHHHCCCCCCCCCCCCCCCEEEEEECCCC
T ss_conf             84699998535207899999999875454302578843204563687430786535434556557867743999971599


Q ss_pred             HHHHHHHHHHHCCCCCC
Q ss_conf             68999999980898689
Q gi|254780249|r  169 DREAKYLLTLFGFPFPK  185 (185)
Q Consensus       169 ~~ea~~Lls~~g~Pf~k  185 (185)
                      ++||++||++|||||+|
T Consensus       161 ~~e~~~Ll~~~g~Pf~~  177 (177)
T d2gycd1         161 DEEGRALLAAFDFPFRK  177 (177)
T ss_dssp             STTSSTTGGGTSCCCBC
T ss_pred             HHHHHHHHHHCCCCCCC
T ss_conf             89999999984998379


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: RL5-like
superfamily: RL5-like
family: Ribosomal protein L5
domain: Ribosomal protein L5
species: Escherichia coli [TaxId: 562]