Query gi|254780249|ref|YP_003064662.1| 50S ribosomal protein L5 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 185 No_of_seqs 126 out of 1598 Neff 5.7 Searched_HMMs 13730 Date Tue May 24 06:04:55 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780249.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1mjia_ d.77.1.1 (A:) Ribosoma 100.0 0 0 476.3 20.1 180 6-185 1-180 (180) 2 d1iq4a_ d.77.1.1 (A:) Ribosoma 100.0 0 0 469.1 20.8 179 7-185 1-179 (179) 3 d2zjrd1 d.77.1.1 (D:3-179) Rib 100.0 0 0 466.4 11.3 177 9-185 1-177 (177) 4 d2gycd1 d.77.1.1 (D:2-178) Rib 100.0 0 0 470.3 -15.7 177 9-185 1-177 (177) 5 d1vqod1 d.77.1.1 (D:10-174) Ri 100.0 0 0 348.6 4.9 145 30-185 2-146 (165) 6 d1mmsa2 d.47.1.1 (A:8-70) Ribo 13.9 17 0.0012 15.0 -0.2 22 84-105 40-61 (63) 7 d1vlya2 d.250.1.1 (A:3-243) Hy 11.4 28 0.002 13.7 0.3 24 94-117 27-50 (241) 8 d1wosa2 d.250.1.1 (A:1-278) Gl 10.4 30 0.0022 13.5 0.3 17 95-111 54-70 (278) 9 d2bl5a1 d.51.1.1 (A:1-134) Qua 10.0 46 0.0034 12.4 1.1 56 58-114 28-96 (134) 10 d1k1ga_ d.51.1.1 (A:) RNA spli 9.3 43 0.0031 12.6 0.7 20 59-79 30-49 (122) No 1 >d1mjia_ d.77.1.1 (A:) Ribosomal protein L5 {Thermus thermophilus [TaxId: 274]} Probab=100.00 E-value=0 Score=476.25 Aligned_cols=180 Identities=53% Similarity=0.970 Sum_probs=177.9 Q ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCC Q ss_conf 56118999999999999998269982228604499997457875653789999999877653896135412376421115 Q gi|254780249|r 6 YEPRLKKEYCLRIREAMQQEFSYKNVMQIPKIEKVVVNMGVGESIADSKKAESAAADLALITGQKPVITRARRSIAGFKL 85 (185) Q Consensus 6 ~~pRLk~~Y~~~i~~dL~~k~~~~N~~~vPki~KIvin~gvg~a~~dkk~l~~~~~~L~~ITGqkP~~~~aKksi~~fki 85 (185) +..|||++|+++|+++|+++++|+|+||+|+|+|||||+|+|+|+.|++.++.+..+|+.||||+|++++||+||++||+ T Consensus 1 ~~~rLk~~Y~~~i~~~L~~k~~~~N~m~vPkl~KIvvn~gvg~a~~d~k~l~~~~~~L~~ItGQkp~~t~akksia~Fkl 80 (180) T d1mjia_ 1 LDVALKRKYYEEVRPELIRRFGYQNVWEVPRLEKVVINQGLGEAKEDARILEKAAQELALITGQKPAVTRAKKSISNFKL 80 (180) T ss_dssp CCCHHHHHHHHTHHHHHHHHSCCSSGGGSCCEEEEEEEEECTTTCCCHHHHHHHHHHHHHHHTSCCEEEECCSCCCCSSS T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCEE T ss_conf 97378999999999999998489983005635699997888820016578999999887531513799862665665043 Q ss_pred CCCCEEEEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCEECCCCCCCCCCCCCCCEEEEECC Q ss_conf 58986288999603428999999999876775204688711015777314330111006875401468855435999804 Q gi|254780249|r 86 RTGMPIGTKVTLRGTNMYDFLDRLINMGMPRIRDFHGLNSRSFDGSGNFSFGIREHIVFPEINYDKVDCVLGMDISICTT 165 (185) Q Consensus 86 RkG~piG~kvTLRg~~my~FL~kli~~vlPrikdf~g~~~~~~d~~Gn~sfGi~e~~~FPEi~yd~~~~~~G~~Iti~Tt 165 (185) |+|+|+||+|||||++||+||+||+++||||||||+|++.++||+.|||+||++||++|||++||++++++||||||||| T Consensus 81 Rkg~piG~kvTLRg~~m~~FL~rli~i~lprirdf~g~~~~sfd~~Gn~sfGi~e~~~FPEi~~d~~~~i~G~~ItivTt 160 (180) T d1mjia_ 81 RKGMPIGLRVTLRRDRMWIFLEKLLNVALPRIRDFRGLNPNSFDGRGNYNLGLREQLIFPEITYDMVDALRGMDIAVVTT 160 (180) T ss_dssp SCCSEEEEEEEECHHHHHHHHHHHHHTTTTTCSSCCCBCTTCBCSSSEEEEEECSCEECSSCEECCTTTSCCEEEEEEES T ss_pred ECCCCEEEEEEECHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCEEEEECCHHEEECCCCCCCCCCCCCCCEEEEEEC T ss_conf 04982258986317779999999999775320024667820036751687433230333544435446847626999947 Q ss_pred CCCHHHHHHHHHHHCCCCCC Q ss_conf 48968999999980898689 Q gi|254780249|r 166 TRSDREAKYLLTLFGFPFPK 185 (185) Q Consensus 166 a~~~~ea~~Lls~~g~Pf~k 185 (185) |++++||++|||+|||||+| T Consensus 161 a~~~~ea~~Lls~~g~Pf~~ 180 (180) T d1mjia_ 161 AETDEEARALLELLGFPFRK 180 (180) T ss_dssp CSSHHHHHHHHHHHTCCBCC T ss_pred CCCHHHHHHHHHHCCCCCCC T ss_conf 69979999999986998459 No 2 >d1iq4a_ d.77.1.1 (A:) Ribosomal protein L5 {Bacillus stearothermophilus [TaxId: 1422]} Probab=100.00 E-value=0 Score=469.08 Aligned_cols=179 Identities=56% Similarity=1.023 Sum_probs=177.2 Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCCHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCC Q ss_conf 61189999999999999982699822286044999974578756537899999998776538961354123764211155 Q gi|254780249|r 7 EPRLKKEYCLRIREAMQQEFSYKNVMQIPKIEKVVVNMGVGESIADSKKAESAAADLALITGQKPVITRARRSIAGFKLR 86 (185) Q Consensus 7 ~pRLk~~Y~~~i~~dL~~k~~~~N~~~vPki~KIvin~gvg~a~~dkk~l~~~~~~L~~ITGqkP~~~~aKksi~~fkiR 86 (185) ..|||+||+++|++||+++++|+|+|++|+|+||+||+|+|+|++|++.++.+..+|+.||||+|++++||+||++||+| T Consensus 1 M~rLk~~Y~~~v~~~L~~k~~~~N~m~vPki~KIvln~gvg~a~~~~~~l~~~~~~L~~ItGQkp~~t~akksi~~fklR 80 (179) T d1iq4a_ 1 MNRLKEKYLNEVVPALMSKFNYKSIMQVPKIEKIVINMGVGDAVQNPKALDSAVEELTLIAGQRPVVTRAKKSIAGFRLR 80 (179) T ss_dssp CCHHHHHHHHTHHHHHHHHHCCSSGGGSCCEEEEEEEEECSCSSSCHHHHHHHHHHHHHHHSSCCEEEECCSCSCSSSCC T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCHHCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCC T ss_conf 91789999999999999985899811157046999978888421346899999999987428834775346542330014 Q ss_pred CCCEEEEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCEECCCCCCCCCCCCCCCEEEEECCC Q ss_conf 89862889996034289999999998767752046887110157773143301110068754014688554359998044 Q gi|254780249|r 87 TGMPIGTKVTLRGTNMYDFLDRLINMGMPRIRDFHGLNSRSFDGSGNFSFGIREHIVFPEINYDKVDCVLGMDISICTTT 166 (185) Q Consensus 87 kG~piG~kvTLRg~~my~FL~kli~~vlPrikdf~g~~~~~~d~~Gn~sfGi~e~~~FPEi~yd~~~~~~G~~Iti~Tta 166 (185) +|+|+||+|||||++||+||+||+++||||+|||+|++.++||+.|||+||++|+++|||++||++++++|||||||||| T Consensus 81 kg~piG~kVTLRg~~m~~FL~rli~ivlPrirdf~g~~~~~fd~~gn~sfGi~e~~~fPei~yd~~~~i~G~~ItivTta 160 (179) T d1iq4a_ 81 QGMPIGAKVTLRGERMYEFLDKLISVSLPRARDFRGVSKKSFDGRGNYTLGIKEQLIFPEIDYDKVNKVRGMDIVIVTTA 160 (179) T ss_dssp TTCEEEEEEEECHHHHHHHHHHHHHTTGGGSTTCCCBCSSCBCSSSEEEEEESCGGGSTTCCGGGSSCCCCEEEEEEESC T ss_pred CCCEEEEEEEECCCHHHHHHHHHHHHCCCHHCCCCCCCCHHCCCCCCEEECHHHHHCCCCCCCCCCCCCCCCEEEEEECC T ss_conf 89616887532131388999999984051000122245121065663365515764043235465578676349999566 Q ss_pred CCHHHHHHHHHHHCCCCCC Q ss_conf 8968999999980898689 Q gi|254780249|r 167 RSDREAKYLLTLFGFPFPK 185 (185) Q Consensus 167 ~~~~ea~~Lls~~g~Pf~k 185 (185) ++++||++|||+|||||+| T Consensus 161 ~~~~e~~~Ll~~~g~Pf~~ 179 (179) T d1iq4a_ 161 NTDEEARELLALLGMPFQK 179 (179) T ss_dssp SSHHHHHHHHHHHTCCBCC T ss_pred CCHHHHHHHHHHCCCCCCC T ss_conf 9979999999985998569 No 3 >d2zjrd1 d.77.1.1 (D:3-179) Ribosomal protein L5 {Deinococcus radiodurans [TaxId: 1299]} Probab=100.00 E-value=0 Score=466.42 Aligned_cols=177 Identities=56% Similarity=0.983 Sum_probs=176.0 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCC Q ss_conf 18999999999999998269982228604499997457875653789999999877653896135412376421115589 Q gi|254780249|r 9 RLKKEYCLRIREAMQQEFSYKNVMQIPKIEKVVVNMGVGESIADSKKAESAAADLALITGQKPVITRARRSIAGFKLRTG 88 (185) Q Consensus 9 RLk~~Y~~~i~~dL~~k~~~~N~~~vPki~KIvin~gvg~a~~dkk~l~~~~~~L~~ITGqkP~~~~aKksi~~fkiRkG 88 (185) |||+||+++|+++|+++++|+|+|++|+|+||+||+|+|+++.|++.++.+..+|+.||||+|+.++||++|++||+|+| T Consensus 1 rLk~~Y~~~i~~~L~~k~~~~N~m~vPkleKIvvn~gvg~a~~d~k~l~~~~~~L~~ItGQkp~~t~akksi~~fklrkg 80 (177) T d2zjrd1 1 QLKTKYNDQVRPALMQQFGYSSVMAVPRIEKIVVNEGLGSSKEDSKAIDKAAKELALITLQKPIITKAKKSISNFKLRQG 80 (177) T ss_dssp CCSHHHHTTTHHHHHTTSCCSCSSSSCCCCEEECBCCCCSSSCCTTHHHHHHHHHHHHHSSCCBCCCCCSCCCSSSCCSS T ss_pred CHHHHHHHHHHHHHHHHHCCCCCHHCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCC T ss_conf 90799999999999998589981006615699996788964331689999999998761897189644643120031179 Q ss_pred CEEEEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCEECCCCCCCCCCCCCCCEEEEECCCCC Q ss_conf 86288999603428999999999876775204688711015777314330111006875401468855435999804489 Q gi|254780249|r 89 MPIGTKVTLRGTNMYDFLDRLINMGMPRIRDFHGLNSRSFDGSGNFSFGIREHIVFPEINYDKVDCVLGMDISICTTTRS 168 (185) Q Consensus 89 ~piG~kvTLRg~~my~FL~kli~~vlPrikdf~g~~~~~~d~~Gn~sfGi~e~~~FPEi~yd~~~~~~G~~Iti~Tta~~ 168 (185) +|+||+|||||++||+||+||+++||||+|||+|++.++||+.|||+||++|+++|||++||.+++++||||||||||++ T Consensus 81 ~piG~kvTLRg~~my~FL~kli~~vlprirdf~G~~~~~fd~~gn~~fGi~e~~~FpEi~~d~~~~i~G~~ItivTsa~~ 160 (177) T d2zjrd1 81 MPVGIKVTLRGERMYVFLEKLINIGLPRIRDFRGINPNAFDGRGNYNLGIKEQLIFPEITYDMVDKTRGMDITIVTTAKT 160 (177) T ss_dssp CCCCCBCEECSHHHHHHHHHHHHTTTTSCTTCCCCCCSCCSTTTCCEECCCCSTTCSSCCGGGSSSCCCCBEEEECCCSS T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHCCHHCCCCCCCCCCCCCCCEEEECHHHHHCCCCCCCCCCCCCCCCEEEEEECCCC T ss_conf 82799998444129999999998633100023455655667676587542564315434556557858716999972399 Q ss_pred HHHHHHHHHHHCCCCCC Q ss_conf 68999999980898689 Q gi|254780249|r 169 DREAKYLLTLFGFPFPK 185 (185) Q Consensus 169 ~~ea~~Lls~~g~Pf~k 185 (185) ++||++|||+|||||+| T Consensus 161 ~~e~~~Ll~~~g~Pf~~ 177 (177) T d2zjrd1 161 DEEARALLQSMGLPFRK 177 (177) T ss_dssp HHHHHHHHHHTCCCCCC T ss_pred HHHHHHHHHHCCCCCCC T ss_conf 89999999984998069 No 4 >d2gycd1 d.77.1.1 (D:2-178) Ribosomal protein L5 {Escherichia coli [TaxId: 562]} Probab=100.00 E-value=0 Score=470.30 Aligned_cols=177 Identities=58% Similarity=1.020 Sum_probs=175.8 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCC Q ss_conf 18999999999999998269982228604499997457875653789999999877653896135412376421115589 Q gi|254780249|r 9 RLKKEYCLRIREAMQQEFSYKNVMQIPKIEKVVVNMGVGESIADSKKAESAAADLALITGQKPVITRARRSIAGFKLRTG 88 (185) Q Consensus 9 RLk~~Y~~~i~~dL~~k~~~~N~~~vPki~KIvin~gvg~a~~dkk~l~~~~~~L~~ITGqkP~~~~aKksi~~fkiRkG 88 (185) ||++||+++|+++|+++++|+|+|++|+|+|||||+|+|+|+.|++.++.+..+|+.||||+|+.++||+||++||+|+| T Consensus 1 RLk~~Y~~~i~~~L~~k~~~~N~~~vPki~KIvvn~gvg~a~~d~~~l~~~~~~L~~ItGQkp~~tkakksi~~fklRkg 80 (177) T d2gycd1 1 KLHDYYKDEVVKKLMTEFNYNSVMQVPRVEKITLNMGVGEAIADKKLLDNAAADLAAISGQKPLITKARKSVAGFKIRQG 80 (177) T ss_dssp CTTSSTTTTTTTSTTTTTCCSCSSSCCCCCCCCCCCCCCTTTCSSCSTTTSSSSTTTSSSSCCCCCCCCSCCCSSSCCSS T ss_pred CHHHHHHHHHHHHHHHHHCCCCHHHCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCC T ss_conf 92799999999999997489980016704699996678644456288899999988763143478732610022243479 Q ss_pred CEEEEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCEECCCCCCCCCCCCCCCEEEEECCCCC Q ss_conf 86288999603428999999999876775204688711015777314330111006875401468855435999804489 Q gi|254780249|r 89 MPIGTKVTLRGTNMYDFLDRLINMGMPRIRDFHGLNSRSFDGSGNFSFGIREHIVFPEINYDKVDCVLGMDISICTTTRS 168 (185) Q Consensus 89 ~piG~kvTLRg~~my~FL~kli~~vlPrikdf~g~~~~~~d~~Gn~sfGi~e~~~FPEi~yd~~~~~~G~~Iti~Tta~~ 168 (185) +|+||+|||||++||+||+||+++||||||||+|++.++||+.|||+||++|+++|||++||++++++||||||||||++ T Consensus 81 ~piG~kvTLRg~~m~~FL~kli~~vlprirdf~g~~~~sfd~~gn~sfGi~e~~~FPEi~~d~~~~i~G~~ItivTsa~~ 160 (177) T d2gycd1 81 YPIGCKVTLRGERMWEFFERLITIAVPRIRDFRGLSAKSFDGRGNYSMGVREQIIFPEIDYDKVDRVRGLDITITTTAKS 160 (177) T ss_dssp CCCCCCCCCCSSCTTTTTTSSSSSSTTCSSSCCCBCCCCCSSSSCCCCCCCSCCCCTTSCSSSCCSCCCCCCCCCCCCSS T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCEEEECHHHHHHCCCCCCCCCCCCCCCEEEEEECCCC T ss_conf 84699998535207899999999875454302578843204563687430786535434556557867743999971599 Q ss_pred HHHHHHHHHHHCCCCCC Q ss_conf 68999999980898689 Q gi|254780249|r 169 DREAKYLLTLFGFPFPK 185 (185) Q Consensus 169 ~~ea~~Lls~~g~Pf~k 185 (185) ++||++||++|||||+| T Consensus 161 ~~e~~~Ll~~~g~Pf~~ 177 (177) T d2gycd1 161 DEEGRALLAAFDFPFRK 177 (177) T ss_dssp STTSSTTGGGTSCCCBC T ss_pred HHHHHHHHHHCCCCCCC T ss_conf 89999999984998379 No 5 >d1vqod1 d.77.1.1 (D:10-174) Ribosomal protein L5 {Archaeon Haloarcula marismortui [TaxId: 2238]} Probab=100.00 E-value=0 Score=348.59 Aligned_cols=145 Identities=39% Similarity=0.597 Sum_probs=138.1 Q ss_pred CHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCEEEEEEEEECCHHHHHHHHH Q ss_conf 82228604499997457875653789999999877653896135412376421115589862889996034289999999 Q gi|254780249|r 30 NVMQIPKIEKVVVNMGVGESIADSKKAESAAADLALITGQKPVITRARRSIAGFKLRTGMPIGTKVTLRGTNMYDFLDRL 109 (185) Q Consensus 30 N~~~vPki~KIvin~gvg~a~~dkk~l~~~~~~L~~ITGqkP~~~~aKksi~~fkiRkG~piG~kvTLRg~~my~FL~kl 109 (185) |+||+|+|+|||||+|+|+++.| +..+..+|+.||||+|++++||+|||+||+|+|+|+||+|||||++||+||+|| T Consensus 2 n~M~vPki~KIvvn~Gvg~a~~~---l~~a~~~L~~ITGQkP~~t~AKksia~FkiRkg~piG~kVTLRg~~m~~FL~rl 78 (165) T d1vqod1 2 HEMREPRIEKVVVHMGIGHGGRD---LANAEDILGEITGQMPVRTKAKRTVGEFDIREGDPIGAKVTLRDEMAEEFLQTA 78 (165) T ss_dssp CTTTSCEEEEEEEEEECCC--------CTTHHHHHHHHSSCCEEEECCSCBTTTBCCSSSEEEEEEEECTHHHHHHHHTT T ss_pred CCCCCCEEEEEEEECCCCHHHHH---HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECHHHHHHHHHH T ss_conf 88777467799998898831787---999999999876077420234332120021489847899997246689999998 Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCEECCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCC Q ss_conf 9987677520468871101577731433011100687540146885543599980448968999999980898689 Q gi|254780249|r 110 INMGMPRIRDFHGLNSRSFDGSGNFSFGIREHIVFPEINYDKVDCVLGMDISICTTTRSDREAKYLLTLFGFPFPK 185 (185) Q Consensus 110 i~~vlPrikdf~g~~~~~~d~~Gn~sfGi~e~~~FPEi~yd~~~~~~G~~Iti~Tta~~~~ea~~Lls~~g~Pf~k 185 (185) +++++|+ .++||++|||||||+||++|||++||++.+++||||||+|+|+++.+|+.+++.+++||++ T Consensus 79 l~~~~~~--------~k~FD~~GN~sfGi~e~~~FPei~~d~~~~i~Gm~Itivt~~~~~~~ak~~~~~~~ip~~~ 146 (165) T d1vqod1 79 LPLAELA--------TSQFDDTGNFSFGVEEHTEFPSQEYDPSIGIYGLDVTVNLVRPGYRVAKRDKASRSIPTKH 146 (165) T ss_dssp GGGSCCC--------STTBCSSSCEEEC--------------------CEEEEEEECGGGGGGTSSTTCCCCCTTT T ss_pred HCCCCCC--------CCCCCCCEEEEECCHHHEECCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCC T ss_conf 4513477--------4463896168867414010565410456675143599995688749999999961898546 No 6 >d1mmsa2 d.47.1.1 (A:8-70) Ribosomal protein L11, N-terminal domain {Thermotoga maritima [TaxId: 2336]} Probab=13.90 E-value=17 Score=14.97 Aligned_cols=22 Identities=18% Similarity=0.350 Sum_probs=14.5 Q ss_pred CCCCCCEEEEEEEEECCHHHHH Q ss_conf 1558986288999603428999 Q gi|254780249|r 84 KLRTGMPIGTKVTLRGTNMYDF 105 (185) Q Consensus 84 kiRkG~piG~kvTLRg~~my~F 105 (185) +-++|+++-|.+|...++-|+| T Consensus 40 k~~~g~~vpV~I~v~~DrsF~f 61 (63) T d1mmsa2 40 ADKAGMILPVVITVYEDKSFTF 61 (63) T ss_dssp TTSCSSEEEEEEEECTTSCEEE T ss_pred CCCCCCEEEEEEEEECCCCEEE T ss_conf 3359986868999968985899 No 7 >d1vlya2 d.250.1.1 (A:3-243) Hypothetical protein YgfZ, N-terminal domain {Escherichia coli [TaxId: 562]} Probab=11.40 E-value=28 Score=13.72 Aligned_cols=24 Identities=8% Similarity=0.336 Sum_probs=11.4 Q ss_pred EEEEECCHHHHHHHHHHHHHHHHH Q ss_conf 999603428999999999876775 Q gi|254780249|r 94 KVTLRGTNMYDFLDRLINMGMPRI 117 (185) Q Consensus 94 kvTLRg~~my~FL~kli~~vlPri 117 (185) .+.++|+.+.+||+.+++-=++++ T Consensus 27 ~i~v~G~Da~~fLq~l~T~di~~l 50 (241) T d1vlya2 27 LATITGADSEKYMQGQVTADVSQM 50 (241) T ss_dssp EEEEESTTHHHHHHTTBSSCGGGC T ss_pred EEEEECCCHHHHHHHHHHHCCCCC T ss_conf 999988899999737764261016 No 8 >d1wosa2 d.250.1.1 (A:1-278) Glycine cleavage system T protein, GcvT {Thermotoga maritima [TaxId: 2336]} Probab=10.43 E-value=30 Score=13.46 Aligned_cols=17 Identities=29% Similarity=0.577 Sum_probs=6.2 Q ss_pred EEEECCHHHHHHHHHHH Q ss_conf 99603428999999999 Q gi|254780249|r 95 VTLRGTNMYDFLDRLIN 111 (185) Q Consensus 95 vTLRg~~my~FL~kli~ 111 (185) +.++|..+.+||++++. T Consensus 54 i~v~G~Da~~~L~~~~t 70 (278) T d1wosa2 54 FLVKGPEAVSFIDFLIT 70 (278) T ss_dssp EEEESTTHHHHHHHHBS T ss_pred EEEECCCHHHHHHHHCC T ss_conf 99975706765421023 No 9 >d2bl5a1 d.51.1.1 (A:1-134) Quaking protein A (Xqua) {African clawed frog (Xenopus laevis) [TaxId: 8355]} Probab=10.02 E-value=46 Score=12.40 Aligned_cols=56 Identities=21% Similarity=0.176 Sum_probs=27.9 Q ss_pred HHHHHHHHHHCCCCEEEECCCCCCCCC----CC-------CCCEEEEEEEEECCH--HHHHHHHHHHHHH Q ss_conf 999987765389613541237642111----55-------898628899960342--8999999999876 Q gi|254780249|r 58 SAAADLALITGQKPVITRARRSIAGFK----LR-------TGMPIGTKVTLRGTN--MYDFLDRLINMGM 114 (185) Q Consensus 58 ~~~~~L~~ITGqkP~~~~aKksi~~fk----iR-------kG~piG~kvTLRg~~--my~FL~kli~~vl 114 (185) .....|+.-||.| +..+.|.|+..=+ .+ -.+|+=|.+|--+.. ++.=+++.+..+- T Consensus 28 ~t~K~le~eTg~k-I~IrGrGS~k~~~~~~~~~~~~~~~~~~epLHv~I~a~~~~~~a~~kl~~A~~~I~ 96 (134) T d2bl5a1 28 LTAKQLEAETGCK-IMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQNRAELKLKRAVEEVK 96 (134) T ss_dssp HHHHHHHHHHSEE-EEEESTTSSCCHHHHHTSTTSHHHHTTTSCCEEEEEECSCCHHHHHHHHHHHHHHH T ss_pred CHHHHHHHHHCCE-EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHH T ss_conf 3499999987988-99983487767542100258888767899977899945817789999999999999 No 10 >d1k1ga_ d.51.1.1 (A:) RNA splicing factor 1 {Human (Homo sapiens) [TaxId: 9606]} Probab=9.34 E-value=43 Score=12.58 Aligned_cols=20 Identities=15% Similarity=0.162 Sum_probs=10.1 Q ss_pred HHHHHHHHHCCCCEEEECCCC Q ss_conf 999877653896135412376 Q gi|254780249|r 59 AAADLALITGQKPVITRARRS 79 (185) Q Consensus 59 ~~~~L~~ITGqkP~~~~aKks 79 (185) ....|+.-||.|-. ++.|-| T Consensus 30 t~K~Le~eTgckI~-IrGrGS 49 (122) T d1k1ga_ 30 TLKNIEKECNAKIM-IRGKGS 49 (122) T ss_dssp HHHHHHHHSCCEEE-EEESTT T ss_pred HHHHHHHHHCCEEE-EEECCC T ss_conf 59999998798899-971577 Done!