Query         gi|254780249|ref|YP_003064662.1| 50S ribosomal protein L5 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 185
No_of_seqs    126 out of 1598
Neff          5.7 
Searched_HMMs 13730
Date          Tue May 24 06:04:55 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780249.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1mjia_ d.77.1.1 (A:) Ribosoma 100.0       0       0  476.3  20.1  180    6-185     1-180 (180)
  2 d1iq4a_ d.77.1.1 (A:) Ribosoma 100.0       0       0  469.1  20.8  179    7-185     1-179 (179)
  3 d2zjrd1 d.77.1.1 (D:3-179) Rib 100.0       0       0  466.4  11.3  177    9-185     1-177 (177)
  4 d2gycd1 d.77.1.1 (D:2-178) Rib 100.0       0       0  470.3 -15.7  177    9-185     1-177 (177)
  5 d1vqod1 d.77.1.1 (D:10-174) Ri 100.0       0       0  348.6   4.9  145   30-185     2-146 (165)
  6 d1mmsa2 d.47.1.1 (A:8-70) Ribo  13.9      17  0.0012   15.0  -0.2   22   84-105    40-61  (63)
  7 d1vlya2 d.250.1.1 (A:3-243) Hy  11.4      28   0.002   13.7   0.3   24   94-117    27-50  (241)
  8 d1wosa2 d.250.1.1 (A:1-278) Gl  10.4      30  0.0022   13.5   0.3   17   95-111    54-70  (278)
  9 d2bl5a1 d.51.1.1 (A:1-134) Qua  10.0      46  0.0034   12.4   1.1   56   58-114    28-96  (134)
 10 d1k1ga_ d.51.1.1 (A:) RNA spli   9.3      43  0.0031   12.6   0.7   20   59-79     30-49  (122)

No 1  
>d1mjia_ d.77.1.1 (A:) Ribosomal protein L5 {Thermus thermophilus [TaxId: 274]}
Probab=100.00  E-value=0  Score=476.25  Aligned_cols=180  Identities=53%  Similarity=0.970  Sum_probs=177.9

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHCCCCHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCC
Q ss_conf             56118999999999999998269982228604499997457875653789999999877653896135412376421115
Q gi|254780249|r    6 YEPRLKKEYCLRIREAMQQEFSYKNVMQIPKIEKVVVNMGVGESIADSKKAESAAADLALITGQKPVITRARRSIAGFKL   85 (185)
Q Consensus         6 ~~pRLk~~Y~~~i~~dL~~k~~~~N~~~vPki~KIvin~gvg~a~~dkk~l~~~~~~L~~ITGqkP~~~~aKksi~~fki   85 (185)
                      +..|||++|+++|+++|+++++|+|+||+|+|+|||||+|+|+|+.|++.++.+..+|+.||||+|++++||+||++||+
T Consensus         1 ~~~rLk~~Y~~~i~~~L~~k~~~~N~m~vPkl~KIvvn~gvg~a~~d~k~l~~~~~~L~~ItGQkp~~t~akksia~Fkl   80 (180)
T d1mjia_           1 LDVALKRKYYEEVRPELIRRFGYQNVWEVPRLEKVVINQGLGEAKEDARILEKAAQELALITGQKPAVTRAKKSISNFKL   80 (180)
T ss_dssp             CCCHHHHHHHHTHHHHHHHHSCCSSGGGSCCEEEEEEEEECTTTCCCHHHHHHHHHHHHHHHTSCCEEEECCSCCCCSSS
T ss_pred             CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCEE
T ss_conf             97378999999999999998489983005635699997888820016578999999887531513799862665665043


Q ss_pred             CCCCEEEEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCEECCCCCCCCCCCCCCCEEEEECC
Q ss_conf             58986288999603428999999999876775204688711015777314330111006875401468855435999804
Q gi|254780249|r   86 RTGMPIGTKVTLRGTNMYDFLDRLINMGMPRIRDFHGLNSRSFDGSGNFSFGIREHIVFPEINYDKVDCVLGMDISICTT  165 (185)
Q Consensus        86 RkG~piG~kvTLRg~~my~FL~kli~~vlPrikdf~g~~~~~~d~~Gn~sfGi~e~~~FPEi~yd~~~~~~G~~Iti~Tt  165 (185)
                      |+|+|+||+|||||++||+||+||+++||||||||+|++.++||+.|||+||++||++|||++||++++++|||||||||
T Consensus        81 Rkg~piG~kvTLRg~~m~~FL~rli~i~lprirdf~g~~~~sfd~~Gn~sfGi~e~~~FPEi~~d~~~~i~G~~ItivTt  160 (180)
T d1mjia_          81 RKGMPIGLRVTLRRDRMWIFLEKLLNVALPRIRDFRGLNPNSFDGRGNYNLGLREQLIFPEITYDMVDALRGMDIAVVTT  160 (180)
T ss_dssp             SCCSEEEEEEEECHHHHHHHHHHHHHTTTTTCSSCCCBCTTCBCSSSEEEEEECSCEECSSCEECCTTTSCCEEEEEEES
T ss_pred             ECCCCEEEEEEECHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCEEEEECCHHEEECCCCCCCCCCCCCCCEEEEEEC
T ss_conf             04982258986317779999999999775320024667820036751687433230333544435446847626999947


Q ss_pred             CCCHHHHHHHHHHHCCCCCC
Q ss_conf             48968999999980898689
Q gi|254780249|r  166 TRSDREAKYLLTLFGFPFPK  185 (185)
Q Consensus       166 a~~~~ea~~Lls~~g~Pf~k  185 (185)
                      |++++||++|||+|||||+|
T Consensus       161 a~~~~ea~~Lls~~g~Pf~~  180 (180)
T d1mjia_         161 AETDEEARALLELLGFPFRK  180 (180)
T ss_dssp             CSSHHHHHHHHHHHTCCBCC
T ss_pred             CCCHHHHHHHHHHCCCCCCC
T ss_conf             69979999999986998459


No 2  
>d1iq4a_ d.77.1.1 (A:) Ribosomal protein L5 {Bacillus stearothermophilus [TaxId: 1422]}
Probab=100.00  E-value=0  Score=469.08  Aligned_cols=179  Identities=56%  Similarity=1.023  Sum_probs=177.2

Q ss_pred             CCHHHHHHHHHHHHHHHHHHCCCCHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCC
Q ss_conf             61189999999999999982699822286044999974578756537899999998776538961354123764211155
Q gi|254780249|r    7 EPRLKKEYCLRIREAMQQEFSYKNVMQIPKIEKVVVNMGVGESIADSKKAESAAADLALITGQKPVITRARRSIAGFKLR   86 (185)
Q Consensus         7 ~pRLk~~Y~~~i~~dL~~k~~~~N~~~vPki~KIvin~gvg~a~~dkk~l~~~~~~L~~ITGqkP~~~~aKksi~~fkiR   86 (185)
                      ..|||+||+++|++||+++++|+|+|++|+|+||+||+|+|+|++|++.++.+..+|+.||||+|++++||+||++||+|
T Consensus         1 M~rLk~~Y~~~v~~~L~~k~~~~N~m~vPki~KIvln~gvg~a~~~~~~l~~~~~~L~~ItGQkp~~t~akksi~~fklR   80 (179)
T d1iq4a_           1 MNRLKEKYLNEVVPALMSKFNYKSIMQVPKIEKIVINMGVGDAVQNPKALDSAVEELTLIAGQRPVVTRAKKSIAGFRLR   80 (179)
T ss_dssp             CCHHHHHHHHTHHHHHHHHHCCSSGGGSCCEEEEEEEEECSCSSSCHHHHHHHHHHHHHHHSSCCEEEECCSCSCSSSCC
T ss_pred             CCHHHHHHHHHHHHHHHHHHCCCCCHHCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCC
T ss_conf             91789999999999999985899811157046999978888421346899999999987428834775346542330014


Q ss_pred             CCCEEEEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCEECCCCCCCCCCCCCCCEEEEECCC
Q ss_conf             89862889996034289999999998767752046887110157773143301110068754014688554359998044
Q gi|254780249|r   87 TGMPIGTKVTLRGTNMYDFLDRLINMGMPRIRDFHGLNSRSFDGSGNFSFGIREHIVFPEINYDKVDCVLGMDISICTTT  166 (185)
Q Consensus        87 kG~piG~kvTLRg~~my~FL~kli~~vlPrikdf~g~~~~~~d~~Gn~sfGi~e~~~FPEi~yd~~~~~~G~~Iti~Tta  166 (185)
                      +|+|+||+|||||++||+||+||+++||||+|||+|++.++||+.|||+||++|+++|||++||++++++||||||||||
T Consensus        81 kg~piG~kVTLRg~~m~~FL~rli~ivlPrirdf~g~~~~~fd~~gn~sfGi~e~~~fPei~yd~~~~i~G~~ItivTta  160 (179)
T d1iq4a_          81 QGMPIGAKVTLRGERMYEFLDKLISVSLPRARDFRGVSKKSFDGRGNYTLGIKEQLIFPEIDYDKVNKVRGMDIVIVTTA  160 (179)
T ss_dssp             TTCEEEEEEEECHHHHHHHHHHHHHTTGGGSTTCCCBCSSCBCSSSEEEEEESCGGGSTTCCGGGSSCCCCEEEEEEESC
T ss_pred             CCCEEEEEEEECCCHHHHHHHHHHHHCCCHHCCCCCCCCHHCCCCCCEEECHHHHHCCCCCCCCCCCCCCCCEEEEEECC
T ss_conf             89616887532131388999999984051000122245121065663365515764043235465578676349999566


Q ss_pred             CCHHHHHHHHHHHCCCCCC
Q ss_conf             8968999999980898689
Q gi|254780249|r  167 RSDREAKYLLTLFGFPFPK  185 (185)
Q Consensus       167 ~~~~ea~~Lls~~g~Pf~k  185 (185)
                      ++++||++|||+|||||+|
T Consensus       161 ~~~~e~~~Ll~~~g~Pf~~  179 (179)
T d1iq4a_         161 NTDEEARELLALLGMPFQK  179 (179)
T ss_dssp             SSHHHHHHHHHHHTCCBCC
T ss_pred             CCHHHHHHHHHHCCCCCCC
T ss_conf             9979999999985998569


No 3  
>d2zjrd1 d.77.1.1 (D:3-179) Ribosomal protein L5 {Deinococcus radiodurans [TaxId: 1299]}
Probab=100.00  E-value=0  Score=466.42  Aligned_cols=177  Identities=56%  Similarity=0.983  Sum_probs=176.0

Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCC
Q ss_conf             18999999999999998269982228604499997457875653789999999877653896135412376421115589
Q gi|254780249|r    9 RLKKEYCLRIREAMQQEFSYKNVMQIPKIEKVVVNMGVGESIADSKKAESAAADLALITGQKPVITRARRSIAGFKLRTG   88 (185)
Q Consensus         9 RLk~~Y~~~i~~dL~~k~~~~N~~~vPki~KIvin~gvg~a~~dkk~l~~~~~~L~~ITGqkP~~~~aKksi~~fkiRkG   88 (185)
                      |||+||+++|+++|+++++|+|+|++|+|+||+||+|+|+++.|++.++.+..+|+.||||+|+.++||++|++||+|+|
T Consensus         1 rLk~~Y~~~i~~~L~~k~~~~N~m~vPkleKIvvn~gvg~a~~d~k~l~~~~~~L~~ItGQkp~~t~akksi~~fklrkg   80 (177)
T d2zjrd1           1 QLKTKYNDQVRPALMQQFGYSSVMAVPRIEKIVVNEGLGSSKEDSKAIDKAAKELALITLQKPIITKAKKSISNFKLRQG   80 (177)
T ss_dssp             CCSHHHHTTTHHHHHTTSCCSCSSSSCCCCEEECBCCCCSSSCCTTHHHHHHHHHHHHHSSCCBCCCCCSCCCSSSCCSS
T ss_pred             CHHHHHHHHHHHHHHHHHCCCCCHHCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCC
T ss_conf             90799999999999998589981006615699996788964331689999999998761897189644643120031179


Q ss_pred             CEEEEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCEECCCCCCCCCCCCCCCEEEEECCCCC
Q ss_conf             86288999603428999999999876775204688711015777314330111006875401468855435999804489
Q gi|254780249|r   89 MPIGTKVTLRGTNMYDFLDRLINMGMPRIRDFHGLNSRSFDGSGNFSFGIREHIVFPEINYDKVDCVLGMDISICTTTRS  168 (185)
Q Consensus        89 ~piG~kvTLRg~~my~FL~kli~~vlPrikdf~g~~~~~~d~~Gn~sfGi~e~~~FPEi~yd~~~~~~G~~Iti~Tta~~  168 (185)
                      +|+||+|||||++||+||+||+++||||+|||+|++.++||+.|||+||++|+++|||++||.+++++||||||||||++
T Consensus        81 ~piG~kvTLRg~~my~FL~kli~~vlprirdf~G~~~~~fd~~gn~~fGi~e~~~FpEi~~d~~~~i~G~~ItivTsa~~  160 (177)
T d2zjrd1          81 MPVGIKVTLRGERMYVFLEKLINIGLPRIRDFRGINPNAFDGRGNYNLGIKEQLIFPEITYDMVDKTRGMDITIVTTAKT  160 (177)
T ss_dssp             CCCCCBCEECSHHHHHHHHHHHHTTTTSCTTCCCCCCSCCSTTTCCEECCCCSTTCSSCCGGGSSSCCCCBEEEECCCSS
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHCCHHCCCCCCCCCCCCCCCEEEECHHHHHCCCCCCCCCCCCCCCCEEEEEECCCC
T ss_conf             82799998444129999999998633100023455655667676587542564315434556557858716999972399


Q ss_pred             HHHHHHHHHHHCCCCCC
Q ss_conf             68999999980898689
Q gi|254780249|r  169 DREAKYLLTLFGFPFPK  185 (185)
Q Consensus       169 ~~ea~~Lls~~g~Pf~k  185 (185)
                      ++||++|||+|||||+|
T Consensus       161 ~~e~~~Ll~~~g~Pf~~  177 (177)
T d2zjrd1         161 DEEARALLQSMGLPFRK  177 (177)
T ss_dssp             HHHHHHHHHHTCCCCCC
T ss_pred             HHHHHHHHHHCCCCCCC
T ss_conf             89999999984998069


No 4  
>d2gycd1 d.77.1.1 (D:2-178) Ribosomal protein L5 {Escherichia coli [TaxId: 562]}
Probab=100.00  E-value=0  Score=470.30  Aligned_cols=177  Identities=58%  Similarity=1.020  Sum_probs=175.8

Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCC
Q ss_conf             18999999999999998269982228604499997457875653789999999877653896135412376421115589
Q gi|254780249|r    9 RLKKEYCLRIREAMQQEFSYKNVMQIPKIEKVVVNMGVGESIADSKKAESAAADLALITGQKPVITRARRSIAGFKLRTG   88 (185)
Q Consensus         9 RLk~~Y~~~i~~dL~~k~~~~N~~~vPki~KIvin~gvg~a~~dkk~l~~~~~~L~~ITGqkP~~~~aKksi~~fkiRkG   88 (185)
                      ||++||+++|+++|+++++|+|+|++|+|+|||||+|+|+|+.|++.++.+..+|+.||||+|+.++||+||++||+|+|
T Consensus         1 RLk~~Y~~~i~~~L~~k~~~~N~~~vPki~KIvvn~gvg~a~~d~~~l~~~~~~L~~ItGQkp~~tkakksi~~fklRkg   80 (177)
T d2gycd1           1 KLHDYYKDEVVKKLMTEFNYNSVMQVPRVEKITLNMGVGEAIADKKLLDNAAADLAAISGQKPLITKARKSVAGFKIRQG   80 (177)
T ss_dssp             CTTSSTTTTTTTSTTTTTCCSCSSSCCCCCCCCCCCCCCTTTCSSCSTTTSSSSTTTSSSSCCCCCCCCSCCCSSSCCSS
T ss_pred             CHHHHHHHHHHHHHHHHHCCCCHHHCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCC
T ss_conf             92799999999999997489980016704699996678644456288899999988763143478732610022243479


Q ss_pred             CEEEEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCEECCCCCCCCCCCCCCCEEEEECCCCC
Q ss_conf             86288999603428999999999876775204688711015777314330111006875401468855435999804489
Q gi|254780249|r   89 MPIGTKVTLRGTNMYDFLDRLINMGMPRIRDFHGLNSRSFDGSGNFSFGIREHIVFPEINYDKVDCVLGMDISICTTTRS  168 (185)
Q Consensus        89 ~piG~kvTLRg~~my~FL~kli~~vlPrikdf~g~~~~~~d~~Gn~sfGi~e~~~FPEi~yd~~~~~~G~~Iti~Tta~~  168 (185)
                      +|+||+|||||++||+||+||+++||||||||+|++.++||+.|||+||++|+++|||++||++++++||||||||||++
T Consensus        81 ~piG~kvTLRg~~m~~FL~kli~~vlprirdf~g~~~~sfd~~gn~sfGi~e~~~FPEi~~d~~~~i~G~~ItivTsa~~  160 (177)
T d2gycd1          81 YPIGCKVTLRGERMWEFFERLITIAVPRIRDFRGLSAKSFDGRGNYSMGVREQIIFPEIDYDKVDRVRGLDITITTTAKS  160 (177)
T ss_dssp             CCCCCCCCCCSSCTTTTTTSSSSSSTTCSSSCCCBCCCCCSSSSCCCCCCCSCCCCTTSCSSSCCSCCCCCCCCCCCCSS
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCEEEECHHHHHHCCCCCCCCCCCCCCCEEEEEECCCC
T ss_conf             84699998535207899999999875454302578843204563687430786535434556557867743999971599


Q ss_pred             HHHHHHHHHHHCCCCCC
Q ss_conf             68999999980898689
Q gi|254780249|r  169 DREAKYLLTLFGFPFPK  185 (185)
Q Consensus       169 ~~ea~~Lls~~g~Pf~k  185 (185)
                      ++||++||++|||||+|
T Consensus       161 ~~e~~~Ll~~~g~Pf~~  177 (177)
T d2gycd1         161 DEEGRALLAAFDFPFRK  177 (177)
T ss_dssp             STTSSTTGGGTSCCCBC
T ss_pred             HHHHHHHHHHCCCCCCC
T ss_conf             89999999984998379


No 5  
>d1vqod1 d.77.1.1 (D:10-174) Ribosomal protein L5 {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=100.00  E-value=0  Score=348.59  Aligned_cols=145  Identities=39%  Similarity=0.597  Sum_probs=138.1

Q ss_pred             CHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCEEEEEEEEECCHHHHHHHHH
Q ss_conf             82228604499997457875653789999999877653896135412376421115589862889996034289999999
Q gi|254780249|r   30 NVMQIPKIEKVVVNMGVGESIADSKKAESAAADLALITGQKPVITRARRSIAGFKLRTGMPIGTKVTLRGTNMYDFLDRL  109 (185)
Q Consensus        30 N~~~vPki~KIvin~gvg~a~~dkk~l~~~~~~L~~ITGqkP~~~~aKksi~~fkiRkG~piG~kvTLRg~~my~FL~kl  109 (185)
                      |+||+|+|+|||||+|+|+++.|   +..+..+|+.||||+|++++||+|||+||+|+|+|+||+|||||++||+||+||
T Consensus         2 n~M~vPki~KIvvn~Gvg~a~~~---l~~a~~~L~~ITGQkP~~t~AKksia~FkiRkg~piG~kVTLRg~~m~~FL~rl   78 (165)
T d1vqod1           2 HEMREPRIEKVVVHMGIGHGGRD---LANAEDILGEITGQMPVRTKAKRTVGEFDIREGDPIGAKVTLRDEMAEEFLQTA   78 (165)
T ss_dssp             CTTTSCEEEEEEEEEECCC--------CTTHHHHHHHHSSCCEEEECCSCBTTTBCCSSSEEEEEEEECTHHHHHHHHTT
T ss_pred             CCCCCCEEEEEEEECCCCHHHHH---HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECHHHHHHHHHH
T ss_conf             88777467799998898831787---999999999876077420234332120021489847899997246689999998


Q ss_pred             HHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCEECCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCC
Q ss_conf             9987677520468871101577731433011100687540146885543599980448968999999980898689
Q gi|254780249|r  110 INMGMPRIRDFHGLNSRSFDGSGNFSFGIREHIVFPEINYDKVDCVLGMDISICTTTRSDREAKYLLTLFGFPFPK  185 (185)
Q Consensus       110 i~~vlPrikdf~g~~~~~~d~~Gn~sfGi~e~~~FPEi~yd~~~~~~G~~Iti~Tta~~~~ea~~Lls~~g~Pf~k  185 (185)
                      +++++|+        .++||++|||||||+||++|||++||++.+++||||||+|+|+++.+|+.+++.+++||++
T Consensus        79 l~~~~~~--------~k~FD~~GN~sfGi~e~~~FPei~~d~~~~i~Gm~Itivt~~~~~~~ak~~~~~~~ip~~~  146 (165)
T d1vqod1          79 LPLAELA--------TSQFDDTGNFSFGVEEHTEFPSQEYDPSIGIYGLDVTVNLVRPGYRVAKRDKASRSIPTKH  146 (165)
T ss_dssp             GGGSCCC--------STTBCSSSCEEEC--------------------CEEEEEEECGGGGGGTSSTTCCCCCTTT
T ss_pred             HCCCCCC--------CCCCCCCEEEEECCHHHEECCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCC
T ss_conf             4513477--------4463896168867414010565410456675143599995688749999999961898546


No 6  
>d1mmsa2 d.47.1.1 (A:8-70) Ribosomal protein L11, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=13.90  E-value=17  Score=14.97  Aligned_cols=22  Identities=18%  Similarity=0.350  Sum_probs=14.5

Q ss_pred             CCCCCCEEEEEEEEECCHHHHH
Q ss_conf             1558986288999603428999
Q gi|254780249|r   84 KLRTGMPIGTKVTLRGTNMYDF  105 (185)
Q Consensus        84 kiRkG~piG~kvTLRg~~my~F  105 (185)
                      +-++|+++-|.+|...++-|+|
T Consensus        40 k~~~g~~vpV~I~v~~DrsF~f   61 (63)
T d1mmsa2          40 ADKAGMILPVVITVYEDKSFTF   61 (63)
T ss_dssp             TTSCSSEEEEEEEECTTSCEEE
T ss_pred             CCCCCCEEEEEEEEECCCCEEE
T ss_conf             3359986868999968985899


No 7  
>d1vlya2 d.250.1.1 (A:3-243) Hypothetical protein YgfZ, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=11.40  E-value=28  Score=13.72  Aligned_cols=24  Identities=8%  Similarity=0.336  Sum_probs=11.4

Q ss_pred             EEEEECCHHHHHHHHHHHHHHHHH
Q ss_conf             999603428999999999876775
Q gi|254780249|r   94 KVTLRGTNMYDFLDRLINMGMPRI  117 (185)
Q Consensus        94 kvTLRg~~my~FL~kli~~vlPri  117 (185)
                      .+.++|+.+.+||+.+++-=++++
T Consensus        27 ~i~v~G~Da~~fLq~l~T~di~~l   50 (241)
T d1vlya2          27 LATITGADSEKYMQGQVTADVSQM   50 (241)
T ss_dssp             EEEEESTTHHHHHHTTBSSCGGGC
T ss_pred             EEEEECCCHHHHHHHHHHHCCCCC
T ss_conf             999988899999737764261016


No 8  
>d1wosa2 d.250.1.1 (A:1-278) Glycine cleavage system T protein, GcvT {Thermotoga maritima [TaxId: 2336]}
Probab=10.43  E-value=30  Score=13.46  Aligned_cols=17  Identities=29%  Similarity=0.577  Sum_probs=6.2

Q ss_pred             EEEECCHHHHHHHHHHH
Q ss_conf             99603428999999999
Q gi|254780249|r   95 VTLRGTNMYDFLDRLIN  111 (185)
Q Consensus        95 vTLRg~~my~FL~kli~  111 (185)
                      +.++|..+.+||++++.
T Consensus        54 i~v~G~Da~~~L~~~~t   70 (278)
T d1wosa2          54 FLVKGPEAVSFIDFLIT   70 (278)
T ss_dssp             EEEESTTHHHHHHHHBS
T ss_pred             EEEECCCHHHHHHHHCC
T ss_conf             99975706765421023


No 9  
>d2bl5a1 d.51.1.1 (A:1-134) Quaking protein A (Xqua) {African clawed frog (Xenopus laevis) [TaxId: 8355]}
Probab=10.02  E-value=46  Score=12.40  Aligned_cols=56  Identities=21%  Similarity=0.176  Sum_probs=27.9

Q ss_pred             HHHHHHHHHHCCCCEEEECCCCCCCCC----CC-------CCCEEEEEEEEECCH--HHHHHHHHHHHHH
Q ss_conf             999987765389613541237642111----55-------898628899960342--8999999999876
Q gi|254780249|r   58 SAAADLALITGQKPVITRARRSIAGFK----LR-------TGMPIGTKVTLRGTN--MYDFLDRLINMGM  114 (185)
Q Consensus        58 ~~~~~L~~ITGqkP~~~~aKksi~~fk----iR-------kG~piG~kvTLRg~~--my~FL~kli~~vl  114 (185)
                      .....|+.-||.| +..+.|.|+..=+    .+       -.+|+=|.+|--+..  ++.=+++.+..+-
T Consensus        28 ~t~K~le~eTg~k-I~IrGrGS~k~~~~~~~~~~~~~~~~~~epLHv~I~a~~~~~~a~~kl~~A~~~I~   96 (134)
T d2bl5a1          28 LTAKQLEAETGCK-IMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQNRAELKLKRAVEEVK   96 (134)
T ss_dssp             HHHHHHHHHHSEE-EEEESTTSSCCHHHHHTSTTSHHHHTTTSCCEEEEEECSCCHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHCCE-EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHH
T ss_conf             3499999987988-99983487767542100258888767899977899945817789999999999999


No 10 
>d1k1ga_ d.51.1.1 (A:) RNA splicing factor 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.34  E-value=43  Score=12.58  Aligned_cols=20  Identities=15%  Similarity=0.162  Sum_probs=10.1

Q ss_pred             HHHHHHHHHCCCCEEEECCCC
Q ss_conf             999877653896135412376
Q gi|254780249|r   59 AAADLALITGQKPVITRARRS   79 (185)
Q Consensus        59 ~~~~L~~ITGqkP~~~~aKks   79 (185)
                      ....|+.-||.|-. ++.|-|
T Consensus        30 t~K~Le~eTgckI~-IrGrGS   49 (122)
T d1k1ga_          30 TLKNIEKECNAKIM-IRGKGS   49 (122)
T ss_dssp             HHHHHHHHSCCEEE-EEESTT
T ss_pred             HHHHHHHHHCCEEE-EEECCC
T ss_conf             59999998798899-971577


Done!