RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780249|ref|YP_003064662.1| 50S ribosomal protein L5
[Candidatus Liberibacter asiaticus str. psy62]
         (185 letters)



>gnl|CDD|178791 PRK00010, rplE, 50S ribosomal protein L5; Validated.
          Length = 179

 Score =  332 bits (853), Expect = 5e-92
 Identities = 114/178 (64%), Positives = 146/178 (82%)

Query: 8   PRLKKEYCLRIREAMQQEFSYKNVMQIPKIEKVVVNMGVGESIADSKKAESAAADLALIT 67
           PRLK++Y   I  A+ +EF YKNVMQ+PK+EK+V+NMGVGE++AD K  E+A  DL LIT
Sbjct: 2   PRLKEKYKEEIVPALMKEFGYKNVMQVPKLEKIVLNMGVGEAVADKKLLENAVEDLTLIT 61

Query: 68  GQKPVITRARRSIAGFKLRTGMPIGTKVTLRGTNMYDFLDRLINMGMPRIRDFHGLNSRS 127
           GQKPV+T+A++SIAGFKLR GMPIG KVTLRG  MY+FLDRLIN+ +PR+RDF GL+ +S
Sbjct: 62  GQKPVVTKAKKSIAGFKLREGMPIGCKVTLRGERMYEFLDRLINIALPRVRDFRGLSPKS 121

Query: 128 FDGSGNFSFGIREHIVFPEINYDKVDCVLGMDISICTTTRSDREAKYLLTLFGFPFPK 185
           FDG GN++ GI+E I+FPEI+YDK+D + GMDI+I TT ++D EA+ LL  FGFPF K
Sbjct: 122 FDGRGNYTLGIKEQIIFPEIDYDKIDKIRGMDITIVTTAKTDEEARALLKAFGFPFRK 179


>gnl|CDD|179792 PRK04219, rpl5p, 50S ribosomal protein L5P; Reviewed.
          Length = 177

 Score =  139 bits (352), Expect = 5e-34
 Identities = 64/141 (45%), Positives = 81/141 (57%), Gaps = 9/141 (6%)

Query: 22  MQQEFSYKNVMQIPKIEKVVVNMGVGESIADSKKAESAAADLALITGQKPVITRARRSIA 81
              E    N M+ P+IEKVVVN+GVGES     KAE     L  +TGQKPV TRA+++I 
Sbjct: 2   SILEDWEMNPMRKPRIEKVVVNIGVGESGERLTKAEKL---LEELTGQKPVRTRAKKTIP 58

Query: 82  GFKLRTGMPIGTKVTLRGTNMYDFLDRLINMGMPRIRDFHGLNSRSFDGSGNFSFGIREH 141
            F +R G PIG KVTLRG    +FL   +     R++        SFD +GN SFGI EH
Sbjct: 59  DFGIRKGEPIGVKVTLRGEKAEEFLKTALEAVGNRLKA------SSFDETGNVSFGIEEH 112

Query: 142 IVFPEINYDKVDCVLGMDISI 162
           I FP + YD    + GMD+ +
Sbjct: 113 IDFPGVKYDPEIGIFGMDVCV 133


>gnl|CDD|185485 PTZ00156, PTZ00156, 60S ribosomal protein L11; Provisional.
          Length = 172

 Score = 89.3 bits (222), Expect = 6e-19
 Identities = 53/144 (36%), Positives = 79/144 (54%), Gaps = 10/144 (6%)

Query: 30  NVMQIPKIEKVVVNMGVGESIADSKKAESAAADLALITGQKPVITRARRSIAGFKLRTGM 89
           N M+  +IEK+V+N+ VGES     +   AA  L  +TGQKPV ++AR ++  F +R   
Sbjct: 6   NPMRKIRIEKLVLNICVGES---GDRLTRAAKVLEQLTGQKPVFSKARYTVRSFGIRRNE 62

Query: 90  PIGTKVTLRGTNMYDFLDRLINMGMPRIRDFHGLNSRSFDGSGNFSFGIREHIVFPEINY 149
            I   VT+RG    + L+R    G+ ++++F  L  R+F  +GNF FGI+EHI    I Y
Sbjct: 63  KIACHVTVRGDKAEEILER----GL-KVKEFE-LKKRNFSDTGNFGFGIQEHIDL-GIKY 115

Query: 150 DKVDCVLGMDISICTTTRSDREAK 173
           D    + GMD  +       R A+
Sbjct: 116 DPSTGIYGMDFYVVLGRPGFRVAR 139


>gnl|CDD|185316 PRK15418, PRK15418, transcriptional regulator LsrR; Provisional.
          Length = 318

 Score = 31.6 bits (72), Expect = 0.12
 Identities = 10/39 (25%), Positives = 22/39 (56%), Gaps = 2/39 (5%)

Query: 13  EYCLRIREAMQQEFSYKNVMQIPKIEKVVVN--MGVGES 49
           E CL +  A++Q FS +++  +P +    +   +G+G +
Sbjct: 68  EGCLELENALRQHFSLQHIRVLPALADADIGGRLGIGAA 106


>gnl|CDD|178732 PLN03190, PLN03190, aminophospholipid translocase; Provisional.
          Length = 1178

 Score = 27.2 bits (60), Expect = 2.6
 Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 3/49 (6%)

Query: 94  KVTLRG--TNMYDFLDRLINMGMPRIRDFHGLNSRSFDGSGNFSFGIRE 140
           KV ++G  T+M+  +DR +NM + R  + H L++ S  G      G+RE
Sbjct: 630 KVFVKGADTSMFSVIDRSLNMNVIRATEAH-LHTYSSLGLRTLVVGMRE 677


>gnl|CDD|181150 PRK07860, PRK07860, NADH dehydrogenase subunit G; Validated.
          Length = 797

 Score = 25.7 bits (57), Expect = 7.2
 Identities = 13/23 (56%), Positives = 14/23 (60%)

Query: 46  VGESIADSKKAESAAADLALITG 68
           VGE +A    A SAAA LA  TG
Sbjct: 462 VGERLATVPGALSAAARLADATG 484


>gnl|CDD|163158 TIGR03150, fabF, beta-ketoacyl-acyl-carrier-protein synthase II.
           FabB sequences should fall well below the noise cutoff
           of this model.
          Length = 407

 Score = 25.5 bits (57), Expect = 9.2
 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 3/45 (6%)

Query: 138 IREHIVFPEINYDKVDCVLGMDISICTTTRSDREAKYLLT-LFGF 181
           IR+ +V P IN D  D     D+        +R+  Y L+  FGF
Sbjct: 355 IRDGVVPPTINLDNPD--PECDLDYVPNEARERKIDYALSNSFGF 397


>gnl|CDD|185386 PRK15489, nfrB, bacteriophage N4 adsorption protein B; Provisional.
          Length = 703

 Score = 25.5 bits (56), Expect = 9.4
 Identities = 26/70 (37%), Positives = 32/70 (45%), Gaps = 11/70 (15%)

Query: 56  AESAAADL---ALITGQKP---VIT-RARRSI-AGFKLRTGMPIGTKVTLRGTNMYDFLD 107
           AE    DL     +TG  P   V T  +RR++ A  K R   P  T  +L  T  YDF  
Sbjct: 218 AEWHQKDLVVRESLTGTVPSAGVGTCFSRRALLALMKERGNQPFNTS-SL--TEDYDFSF 274

Query: 108 RLINMGMPRI 117
           RL  +GM  I
Sbjct: 275 RLAELGMQEI 284


>gnl|CDD|177413 PHA02584, 34, long tail fiber, proximal subunit; Provisional.
          Length = 1229

 Score = 25.1 bits (55), Expect = 9.8
 Identities = 16/66 (24%), Positives = 25/66 (37%), Gaps = 4/66 (6%)

Query: 45  GVGESIADSKKAESAAADLALITGQKPVITRARRSIAG---FKLRTGMPIGTKVTLRGTN 101
           GV E IA   +  +   D  +IT +K    +A  ++ G        G          GT 
Sbjct: 526 GVAE-IATQAETNAGTDDTTIITPKKLHARQASETLTGIVKLVSTAGTAPAAARGTAGTG 584

Query: 102 MYDFLD 107
           +Y+  D
Sbjct: 585 VYNKND 590


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.324    0.140    0.410 

Gapped
Lambda     K      H
   0.267   0.0841    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 3,070,929
Number of extensions: 192875
Number of successful extensions: 340
Number of sequences better than 10.0: 1
Number of HSP's gapped: 336
Number of HSP's successfully gapped: 13
Length of query: 185
Length of database: 5,994,473
Length adjustment: 88
Effective length of query: 97
Effective length of database: 4,092,969
Effective search space: 397017993
Effective search space used: 397017993
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (24.4 bits)