RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780249|ref|YP_003064662.1| 50S ribosomal protein L5 [Candidatus Liberibacter asiaticus str. psy62] (185 letters) >gnl|CDD|178791 PRK00010, rplE, 50S ribosomal protein L5; Validated. Length = 179 Score = 332 bits (853), Expect = 5e-92 Identities = 114/178 (64%), Positives = 146/178 (82%) Query: 8 PRLKKEYCLRIREAMQQEFSYKNVMQIPKIEKVVVNMGVGESIADSKKAESAAADLALIT 67 PRLK++Y I A+ +EF YKNVMQ+PK+EK+V+NMGVGE++AD K E+A DL LIT Sbjct: 2 PRLKEKYKEEIVPALMKEFGYKNVMQVPKLEKIVLNMGVGEAVADKKLLENAVEDLTLIT 61 Query: 68 GQKPVITRARRSIAGFKLRTGMPIGTKVTLRGTNMYDFLDRLINMGMPRIRDFHGLNSRS 127 GQKPV+T+A++SIAGFKLR GMPIG KVTLRG MY+FLDRLIN+ +PR+RDF GL+ +S Sbjct: 62 GQKPVVTKAKKSIAGFKLREGMPIGCKVTLRGERMYEFLDRLINIALPRVRDFRGLSPKS 121 Query: 128 FDGSGNFSFGIREHIVFPEINYDKVDCVLGMDISICTTTRSDREAKYLLTLFGFPFPK 185 FDG GN++ GI+E I+FPEI+YDK+D + GMDI+I TT ++D EA+ LL FGFPF K Sbjct: 122 FDGRGNYTLGIKEQIIFPEIDYDKIDKIRGMDITIVTTAKTDEEARALLKAFGFPFRK 179 >gnl|CDD|179792 PRK04219, rpl5p, 50S ribosomal protein L5P; Reviewed. Length = 177 Score = 139 bits (352), Expect = 5e-34 Identities = 64/141 (45%), Positives = 81/141 (57%), Gaps = 9/141 (6%) Query: 22 MQQEFSYKNVMQIPKIEKVVVNMGVGESIADSKKAESAAADLALITGQKPVITRARRSIA 81 E N M+ P+IEKVVVN+GVGES KAE L +TGQKPV TRA+++I Sbjct: 2 SILEDWEMNPMRKPRIEKVVVNIGVGESGERLTKAEKL---LEELTGQKPVRTRAKKTIP 58 Query: 82 GFKLRTGMPIGTKVTLRGTNMYDFLDRLINMGMPRIRDFHGLNSRSFDGSGNFSFGIREH 141 F +R G PIG KVTLRG +FL + R++ SFD +GN SFGI EH Sbjct: 59 DFGIRKGEPIGVKVTLRGEKAEEFLKTALEAVGNRLKA------SSFDETGNVSFGIEEH 112 Query: 142 IVFPEINYDKVDCVLGMDISI 162 I FP + YD + GMD+ + Sbjct: 113 IDFPGVKYDPEIGIFGMDVCV 133 >gnl|CDD|185485 PTZ00156, PTZ00156, 60S ribosomal protein L11; Provisional. Length = 172 Score = 89.3 bits (222), Expect = 6e-19 Identities = 53/144 (36%), Positives = 79/144 (54%), Gaps = 10/144 (6%) Query: 30 NVMQIPKIEKVVVNMGVGESIADSKKAESAAADLALITGQKPVITRARRSIAGFKLRTGM 89 N M+ +IEK+V+N+ VGES + AA L +TGQKPV ++AR ++ F +R Sbjct: 6 NPMRKIRIEKLVLNICVGES---GDRLTRAAKVLEQLTGQKPVFSKARYTVRSFGIRRNE 62 Query: 90 PIGTKVTLRGTNMYDFLDRLINMGMPRIRDFHGLNSRSFDGSGNFSFGIREHIVFPEINY 149 I VT+RG + L+R G+ ++++F L R+F +GNF FGI+EHI I Y Sbjct: 63 KIACHVTVRGDKAEEILER----GL-KVKEFE-LKKRNFSDTGNFGFGIQEHIDL-GIKY 115 Query: 150 DKVDCVLGMDISICTTTRSDREAK 173 D + GMD + R A+ Sbjct: 116 DPSTGIYGMDFYVVLGRPGFRVAR 139 >gnl|CDD|185316 PRK15418, PRK15418, transcriptional regulator LsrR; Provisional. Length = 318 Score = 31.6 bits (72), Expect = 0.12 Identities = 10/39 (25%), Positives = 22/39 (56%), Gaps = 2/39 (5%) Query: 13 EYCLRIREAMQQEFSYKNVMQIPKIEKVVVN--MGVGES 49 E CL + A++Q FS +++ +P + + +G+G + Sbjct: 68 EGCLELENALRQHFSLQHIRVLPALADADIGGRLGIGAA 106 >gnl|CDD|178732 PLN03190, PLN03190, aminophospholipid translocase; Provisional. Length = 1178 Score = 27.2 bits (60), Expect = 2.6 Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 3/49 (6%) Query: 94 KVTLRG--TNMYDFLDRLINMGMPRIRDFHGLNSRSFDGSGNFSFGIRE 140 KV ++G T+M+ +DR +NM + R + H L++ S G G+RE Sbjct: 630 KVFVKGADTSMFSVIDRSLNMNVIRATEAH-LHTYSSLGLRTLVVGMRE 677 >gnl|CDD|181150 PRK07860, PRK07860, NADH dehydrogenase subunit G; Validated. Length = 797 Score = 25.7 bits (57), Expect = 7.2 Identities = 13/23 (56%), Positives = 14/23 (60%) Query: 46 VGESIADSKKAESAAADLALITG 68 VGE +A A SAAA LA TG Sbjct: 462 VGERLATVPGALSAAARLADATG 484 >gnl|CDD|163158 TIGR03150, fabF, beta-ketoacyl-acyl-carrier-protein synthase II. FabB sequences should fall well below the noise cutoff of this model. Length = 407 Score = 25.5 bits (57), Expect = 9.2 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 3/45 (6%) Query: 138 IREHIVFPEINYDKVDCVLGMDISICTTTRSDREAKYLLT-LFGF 181 IR+ +V P IN D D D+ +R+ Y L+ FGF Sbjct: 355 IRDGVVPPTINLDNPD--PECDLDYVPNEARERKIDYALSNSFGF 397 >gnl|CDD|185386 PRK15489, nfrB, bacteriophage N4 adsorption protein B; Provisional. Length = 703 Score = 25.5 bits (56), Expect = 9.4 Identities = 26/70 (37%), Positives = 32/70 (45%), Gaps = 11/70 (15%) Query: 56 AESAAADL---ALITGQKP---VIT-RARRSI-AGFKLRTGMPIGTKVTLRGTNMYDFLD 107 AE DL +TG P V T +RR++ A K R P T +L T YDF Sbjct: 218 AEWHQKDLVVRESLTGTVPSAGVGTCFSRRALLALMKERGNQPFNTS-SL--TEDYDFSF 274 Query: 108 RLINMGMPRI 117 RL +GM I Sbjct: 275 RLAELGMQEI 284 >gnl|CDD|177413 PHA02584, 34, long tail fiber, proximal subunit; Provisional. Length = 1229 Score = 25.1 bits (55), Expect = 9.8 Identities = 16/66 (24%), Positives = 25/66 (37%), Gaps = 4/66 (6%) Query: 45 GVGESIADSKKAESAAADLALITGQKPVITRARRSIAG---FKLRTGMPIGTKVTLRGTN 101 GV E IA + + D +IT +K +A ++ G G GT Sbjct: 526 GVAE-IATQAETNAGTDDTTIITPKKLHARQASETLTGIVKLVSTAGTAPAAARGTAGTG 584 Query: 102 MYDFLD 107 +Y+ D Sbjct: 585 VYNKND 590 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.324 0.140 0.410 Gapped Lambda K H 0.267 0.0841 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 3,070,929 Number of extensions: 192875 Number of successful extensions: 340 Number of sequences better than 10.0: 1 Number of HSP's gapped: 336 Number of HSP's successfully gapped: 13 Length of query: 185 Length of database: 5,994,473 Length adjustment: 88 Effective length of query: 97 Effective length of database: 4,092,969 Effective search space: 397017993 Effective search space used: 397017993 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 54 (24.4 bits)