RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780249|ref|YP_003064662.1| 50S ribosomal protein L5 [Candidatus Liberibacter asiaticus str. psy62] (185 letters) >1iq4_A 50S ribosomal protein L5; rRNA-binding, RNP motif, RNA binding protein; 1.80A {Geobacillus stearothermophilus} (A:) Length = 179 Score = 236 bits (604), Expect = 1e-63 Identities = 100/178 (56%), Positives = 139/178 (78%) Query: 8 PRLKKEYCLRIREAMQQEFSYKNVMQIPKIEKVVVNMGVGESIADSKKAESAAADLALIT 67 RLK++Y + A+ +F+YK++MQ+PKIEK+V+NMGVG+++ + K +SA +L LI Sbjct: 2 NRLKEKYLNEVVPALMSKFNYKSIMQVPKIEKIVINMGVGDAVQNPKALDSAVEELTLIA 61 Query: 68 GQKPVITRARRSIAGFKLRTGMPIGTKVTLRGTNMYDFLDRLINMGMPRIRDFHGLNSRS 127 GQ+PV+TRA++SIAGF+LR GMPIG KVTLRG MY+FLD+LI++ +PR RDF G++ +S Sbjct: 62 GQRPVVTRAKKSIAGFRLRQGMPIGAKVTLRGERMYEFLDKLISVSLPRARDFRGVSKKS 121 Query: 128 FDGSGNFSFGIREHIVFPEINYDKVDCVLGMDISICTTTRSDREAKYLLTLFGFPFPK 185 FDG GN++ GI+E ++FPEI+YDKV+ V GMDI I TT +D EA+ LL L G PF K Sbjct: 122 FDGRGNYTLGIKEQLIFPEIDYDKVNKVRGMDIVIVTTANTDEEARELLALLGMPFQK 179 >3bbo_H Ribosomal protein L5; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} (H:) Length = 220 Score = 233 bits (595), Expect = 1e-62 Identities = 92/183 (50%), Positives = 129/183 (70%) Query: 3 DCKYEPRLKKEYCLRIREAMQQEFSYKNVMQIPKIEKVVVNMGVGESIADSKKAESAAAD 62 + + RLK Y ++ +++EFSY N++++PK+ K+VVN G+G++ ++K ++A + Sbjct: 12 EAETINRLKTNYIEKMVPLLKEEFSYSNILEVPKVVKIVVNCGIGDASQNAKGLDAAINE 71 Query: 63 LALITGQKPVITRARRSIAGFKLRTGMPIGTKVTLRGTNMYDFLDRLINMGMPRIRDFHG 122 LALITGQ+PV T+A+ SIAGFK+R GM +G VTLRG MY FLDRLIN+ +PR RDF G Sbjct: 72 LALITGQRPVKTKAKTSIAGFKVREGMTLGIAVTLRGNLMYSFLDRLINLALPRTRDFQG 131 Query: 123 LNSRSFDGSGNFSFGIREHIVFPEINYDKVDCVLGMDISICTTTRSDREAKYLLTLFGFP 182 +N SFDG GN+S G RE VFPEI + V GMD+ I TT ++D+EA LL+L G P Sbjct: 132 VNPNSFDGHGNYSVGFREQSVFPEIKPEIVGKARGMDVCITTTAKTDKEAYKLLSLMGMP 191 Query: 183 FPK 185 F + Sbjct: 192 FRE 194 >3i1n_F 50S ribosomal protein L5; ribosome structure, protein-RNA complex, acetylation, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA- binding, methylation; 3.19A {Escherichia coli k-12} PDB: 1vs8_F 1vs6_F 3i1p_F 3i1r_F 3i1t_F 3i20_F 3i22_F 2qam_F* 1p85_D 1p86_D 2awb_F 2aw4_F 2i2v_F 2j28_F 2i2t_F* 2qao_F* 2qba_F* 2qbc_F* 2qbe_F 2qbg_F ... (F:) Length = 179 Score = 231 bits (591), Expect = 4e-62 Identities = 102/178 (57%), Positives = 138/178 (77%) Query: 8 PRLKKEYCLRIREAMQQEFSYKNVMQIPKIEKVVVNMGVGESIADSKKAESAAADLALIT 67 +L Y + + + EF+Y +VMQ+P++EK+ +NMGVGE+IAD K ++AAADLA I+ Sbjct: 2 AKLHDYYKDEVVKKLMTEFNYNSVMQVPRVEKITLNMGVGEAIADKKLLDNAAADLAAIS 61 Query: 68 GQKPVITRARRSIAGFKLRTGMPIGTKVTLRGTNMYDFLDRLINMGMPRIRDFHGLNSRS 127 GQKP+IT+AR+S+AGFK+R G PIG KVTLRG M++F +RLI + +PRIRDF GL+++S Sbjct: 62 GQKPLITKARKSVAGFKIRQGYPIGCKVTLRGERMWEFFERLITIAVPRIRDFRGLSAKS 121 Query: 128 FDGSGNFSFGIREHIVFPEINYDKVDCVLGMDISICTTTRSDREAKYLLTLFGFPFPK 185 FDG GN+S G+RE I+FPEI+YDKVD V G+DI+I TT +SD E + LL F FPF K Sbjct: 122 FDGRGNYSMGVREQIIFPEIDYDKVDRVRGLDITITTTAKSDEEGRALLAAFDFPFRK 179 >1mji_A 50S ribosomal protein L5; ribosomal protein - 5S rRNA complex, ribosome; 2.50A {Thermus thermophilus} (A:) Length = 182 Score = 230 bits (588), Expect = 9e-62 Identities = 94/180 (52%), Positives = 132/180 (73%) Query: 6 YEPRLKKEYCLRIREAMQQEFSYKNVMQIPKIEKVVVNMGVGESIADSKKAESAAADLAL 65 + LK++Y +R + + F Y+NV ++P++EKVV+N G+GE+ D++ E AA +LAL Sbjct: 3 LDVALKRKYYEEVRPELIRRFGYQNVWEVPRLEKVVINQGLGEAKEDARILEKAAQELAL 62 Query: 66 ITGQKPVITRARRSIAGFKLRTGMPIGTKVTLRGTNMYDFLDRLINMGMPRIRDFHGLNS 125 ITGQKP +TRA++SI+ FKLR GMPIG +VTLR + FL++L+N+ +PRIRDF GLN Sbjct: 63 ITGQKPAVTRAKKSISNFKLRKGMPIGLRVTLRRDRXWIFLEKLLNVALPRIRDFRGLNP 122 Query: 126 RSFDGSGNFSFGIREHIVFPEINYDKVDCVLGMDISICTTTRSDREAKYLLTLFGFPFPK 185 SFDG GN++ G+RE ++FPEI YD VD + G DI++ TT +D EA+ LL L GFPF K Sbjct: 123 NSFDGRGNYNLGLREQLIFPEITYDMVDALRGXDIAVVTTAETDEEARALLELLGFPFRK 182 >1vq8_D 50S ribosomal protein L5P; ribosome 50S, protein-protein complex, RNA-RNA complex, protein-RNA complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} (D:) Length = 177 Score = 200 bits (510), Expect = 1e-52 Identities = 56/165 (33%), Positives = 78/165 (47%), Gaps = 11/165 (6%) Query: 21 AMQQEFSYKNVMQIPKIEKVVVNMGVGESIADSKKAESAAADLALITGQKPVITRARRSI 80 + + + M+ P+IEKVVV+MG+G D A L ITGQ PV T+A+R++ Sbjct: 3 SESESGGDFHEMREPRIEKVVVHMGIGHGGRDLANA---EDILGEITGQMPVRTKAKRTV 59 Query: 81 AGFKLRTGMPIGTKVTLRGTNMYDFLDRLINMGMPRIRDFHGLNSRSFDGSGNFSFGIRE 140 F +R G PIG KVTLR +FL + + FD +GNFSFG+ E Sbjct: 60 GEFDIREGDPIGAKVTLRDEMAEEFLQTALPLAELATS--------QFDDTGNFSFGVEE 111 Query: 141 HIVFPEINYDKVDCVLGMDISICTTTRSDREAKYLLTLFGFPFPK 185 H FP YD + G+D+++ R AK P Sbjct: 112 HTEFPSQEYDPSIGIYGLDVTVNLVRPGYRVAKRDKASRSIPTKH 156 >2noq_H 60S ribosomal protein L11-B; IRES RNA, ribosome, translation, internal initiation; 7.30A {Saccharomyces cerevisiae} PDB: 1s1i_J 2zkr_d (H:) Length = 165 Score = 190 bits (484), Expect = 1e-49 Identities = 48/156 (30%), Positives = 73/156 (46%), Gaps = 10/156 (6%) Query: 30 NVMQIPKIEKVVVNMGVGESIADSKKAESAAADLALITGQKPVITRARRSIAGFKLRTGM 89 N M+ KIEK+V+N+ VGES + A+ L ++GQ PV ++AR ++ F +R Sbjct: 1 NPMRDLKIEKLVLNISVGES---GDRLTRASKVLEQLSGQTPVQSKARYTVRTFGIRRNE 57 Query: 90 PIGTKVTLRGTNMYDFLDRLINMGMPRIRDFHGLNSRSFDGSGNFSFGIREHIVFPEINY 149 I VT+RG + L+R + + ++RD +F +GNF FGI EHI I Y Sbjct: 58 KIAVHVTVRGPKAEEILERGLKVKEYQLRDR------NFSATGNFGFGIDEHI-DLGIKY 110 Query: 150 DKVDCVLGMDISICTTTRSDREAKYLLTLFGFPFPK 185 D + GMD + R + Sbjct: 111 DPSIGIFGMDFYVVMNRPGARVTRRKRCKGTVGNSH 146 >1uhz_A Staufen (RNA binding protein) homolog 2; DSRM, staufen homolog 2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} (A:) Length = 89 Score = 29.1 bits (65), Expect = 0.36 Identities = 10/58 (17%), Positives = 16/58 (27%), Gaps = 16/58 (27%) Query: 24 QEFSYKNVMQIPKIE---------------KVVVNMGVGESIADSKK-AESAAADLAL 65 + + P +V V V +KK A+ AA+ L Sbjct: 13 AQIQQARKEKEPDYILLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAML 70 >3c25_A Noti Restriction Endonuclease Bound To Cognate Dna {Nocardia otitidiscaviarum} (A:) Length = 383 Score = 27.8 bits (61), Expect = 1.0 Identities = 24/133 (18%), Positives = 46/133 (34%), Gaps = 12/133 (9%) Query: 45 GVGESIADSKKAESAAADLALITGQKPVITRARRSIAGFKLRTG--MPIGTKVTLRGTNM 102 G G + A AD A+ G + + R +A F+ + G + I + + Sbjct: 100 GYGPTEPLQFIAAPTLADQAVRDGIREWLDRGVHVVAYFQEKLGGELSISKTDSSPEFSF 159 Query: 103 YDFLDRLI-NMGMPRIRDFHGLNSRSFDGSGNFSFGIREHIVFPEINYDKVDCVLGMDIS 161 L + +P+I+ + L ++ D G+ + + V G+D Sbjct: 160 DWTLAEVESIYPVPKIKRYGVLEIQTMDFHGS---------YKHAVGAIDIALVEGIDFH 210 Query: 162 ICTTTRSDREAKY 174 T + R A Sbjct: 211 GWLPTPAGRAALS 223 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} (B:1772-1800,B:1916-2006) Length = 120 Score = 27.4 bits (61), Expect = 1.1 Identities = 9/33 (27%), Positives = 13/33 (39%), Gaps = 8/33 (24%) Query: 79 SIAGFKLRTGMPIGTKVTL---RGTNMYDFLDR 108 S+A M I + V + RG M + R Sbjct: 1 SLADV-----MSIESLVEVVFYRGMTMQVAVPR 28 >1di2_A XLRBPA, double stranded RNA binding protein A; protein-RNA complex, protein-RNA interactions, RNA-bining protein; 1.90A {Xenopus laevis} (A:) Length = 69 Score = 27.4 bits (61), Expect = 1.2 Identities = 11/58 (18%), Positives = 19/58 (32%), Gaps = 16/58 (27%) Query: 24 QEFSYKNVMQIPKIE---------------KVVVNMGVGESIADSKK-AESAAADLAL 65 QE + + ++P+ V V SK+ A+ AA+ L Sbjct: 7 QELAVQKGWRLPEYTVAQESGPPHKREFTITCRVETFVETGSGTSKQVAKRVAAEKLL 64 >2dmy_A Spermatid perinuclear RNA-binding protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:) Length = 97 Score = 27.2 bits (60), Expect = 1.4 Identities = 9/28 (32%), Positives = 12/28 (42%), Gaps = 1/28 (3%) Query: 39 KVVVNMGVGESIADSKK-AESAAADLAL 65 V V+ E+ SKK A+ A L Sbjct: 51 SVDVDGTTYEASGPSKKTAKLHVAVKVL 78 >2dix_A Interferon-inducible double stranded RNA- dependent protein kinase activator A; structure genomics, DSRM domain, hypothetical protein PRKRA; NMR {Homo sapiens} (A:) Length = 84 Score = 27.1 bits (60), Expect = 1.4 Identities = 9/28 (32%), Positives = 13/28 (46%), Gaps = 1/28 (3%) Query: 39 KVVVNMGVGESIADSKK-AESAAADLAL 65 +V V SKK A+ AA+ A+ Sbjct: 44 RVTVGDITCTGEGTSKKLAKHRAAEAAI 71 >2cpn_A TAR RNA-binding protein 2; double-stranded RNA binding domain, DSRBD, DSRM., structural genomics, NPPSFA; NMR {Homo sapiens} (A:) Length = 89 Score = 27.2 bits (60), Expect = 1.4 Identities = 11/58 (18%), Positives = 17/58 (29%), Gaps = 16/58 (27%) Query: 24 QEFSYKNVMQIPK---------------IEKVVVNMGVGESIADSKK-AESAAADLAL 65 QE + ++P+ V + SKK A+ AA L Sbjct: 23 QELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFIEIGSGTSKKLAKRNAAAKML 80 >2nug_A Ribonuclease III, RNAse III; dsRNA, RNA interference, endonucleolytic cleavage, hydrolase/RNA complex; 1.70A {Aquifex aeolicus} (A:149-221) Length = 73 Score = 27.1 bits (60), Expect = 1.5 Identities = 11/58 (18%), Positives = 18/58 (31%), Gaps = 16/58 (27%) Query: 24 QEFSYKNVMQIPKIE---------------KVVVNMGVGESIADSKK-AESAAADLAL 65 QE + K + P+ + + SKK AE AA+ + Sbjct: 9 QEITQKRWKERPEYRLISVEGPHHKKKFIVEAKIKEYRTLGEGKSKKEAEQRAAEELI 66 >2b7t_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} (A:) Length = 73 Score = 27.0 bits (60), Expect = 1.7 Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 1/28 (3%) Query: 39 KVVVNMGVGESIADSKK-AESAAADLAL 65 V VN V E +KK A+ AA+ AL Sbjct: 39 SVEVNGQVFEGSGPTKKKAKLHAAEKAL 66 >1ekz_A DSRBDIII, maternal effect protein (staufen); structure, protein/RNA, protein DSRBD, RNA hairpin; NMR {Drosophila melanogaster} (A:) Length = 76 Score = 26.7 bits (59), Expect = 2.2 Identities = 10/56 (17%), Positives = 20/56 (35%), Gaps = 3/56 (5%) Query: 13 EYCLRIREAMQQEFSYKNVMQIPKIEKVVVNMG--VGESIADSKK-AESAAADLAL 65 E ++ + + + K +G V E + KK ++ AA+ L Sbjct: 15 EIGIKRNMTVHFKVLREEGPAHMKNFITACIVGSIVTEGEGNGKKVSKKRAAEKML 70 >1efv_A Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} (A:184-315) Length = 132 Score = 26.5 bits (58), Expect = 2.2 Identities = 6/72 (8%), Positives = 19/72 (26%) Query: 48 ESIADSKKAESAAADLALITGQKPVITRARRSIAGFKLRTGMPIGTKVTLRGTNMYDFLD 107 + + S + E A + + G+ + + + +G Sbjct: 1 QKLTKSDRPELTGAKVVVSGGRGLKSGENFKLLYDLADQLHAAVGASRAAVDAGFVPNDM 60 Query: 108 RLINMGMPRIRD 119 ++ G + Sbjct: 61 QVGQTGKIVAPE 72 >2buf_A Acetylglutamate kinase; acetyglutamate kinase, ADP, arginine biosynthesis, FEED-BACK inhibition, hexamer, transferase; HET: NLG ADP; 2.95A {Pseudomonas aeruginosa} (A:22-300) Length = 279 Score = 26.5 bits (57), Expect = 2.2 Identities = 18/108 (16%), Positives = 40/108 (37%), Gaps = 10/108 (9%) Query: 33 QIPKIEKVVVNMGVGESIADSKKAESAAADLALIT--GQKPVIT-----RARRSIAGFKL 85 + + +V+ G G ++ + A D+ L+ G PV+ + + + Sbjct: 1 RRFVGKTLVIKYG-GNAMESEELKAGFARDVVLMKAVGINPVVVHGGGPQIGDLLKRLSI 59 Query: 86 RTGMPIGTKVTLRGTN--MYDFLDRLINMGMPRIRDFHGLNSRSFDGS 131 + G +VT T + L +N + + + HG ++ G Sbjct: 60 ESHFIDGMRVTDAATMDVVEMVLGGQVNKDIVNLINRHGGSAIGLTGK 107 >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} (A:354-363,A:524-698) Length = 185 Score = 26.7 bits (58), Expect = 2.3 Identities = 18/56 (32%), Positives = 20/56 (35%) Query: 25 EFSYKNVMQIPKIEKVVVNMGVGESIADSKKAESAAADLALITGQKPVITRARRSI 80 EF P IE V M VGE + AA L L G V R+ S Sbjct: 107 EFEVGTGSMNPHIESEVTQMTVGEYASFKMTPPDAAEALILAVGSDTVRIRSLLSE 162 >2khx_A Ribonuclease 3; drosha, RNA binding domain, hydrolase, gene regulation, nuclear protein; NMR {Homo sapiens} (A:29-85) Length = 57 Score = 26.3 bits (58), Expect = 2.9 Identities = 11/43 (25%), Positives = 16/43 (37%), Gaps = 3/43 (6%) Query: 36 KIEKVVVNMGVGESIADSKKAESAAADLALITGQKPVITRARR 78 + + G G SI ++AE AA AL P + Sbjct: 17 YFKGERIGCGKGPSI---QQAEMGAAMDALEKYNFPQMHHHHH 56 >1x49_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} (A:) Length = 97 Score = 26.1 bits (57), Expect = 3.2 Identities = 12/57 (21%), Positives = 22/57 (38%), Gaps = 4/57 (7%) Query: 13 EYCLRIREAMQQEFSYKNVMQIPKIEKVVVNMG---VGESIADSKK-AESAAADLAL 65 +Y A+ + + + V + E+ SK+ A +AAA LA+ Sbjct: 22 KYRQMHGVAITYKELSTSGPPHDRRFTFQVLIDEKEFPEAKGRSKQEARNAAAKLAV 78 >2b7v_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} (A:) Length = 71 Score = 25.9 bits (57), Expect = 3.7 Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 1/28 (3%) Query: 39 KVVVNMGVGESIADSKK-AESAAADLAL 65 VVV+ E +KK A++ AA AL Sbjct: 36 SVVVDGQFFEGSGRNKKLAKARAAQSAL 63 >1uil_A Double-stranded RNA-binding motif; structural genomics, DSRM, riken structural genomics/proteomics initiative, RSGI RNA binding protein; NMR {Mus musculus} (A:) Length = 113 Score = 25.7 bits (56), Expect = 3.8 Identities = 8/58 (13%), Positives = 23/58 (39%), Gaps = 4/58 (6%) Query: 9 RLKKEY-CLRIREAMQQEFSYKNVMQIPKIEKVVVNMGVGESIADSKKAESAAADLAL 65 +++ EY ++ + F + + I ++ + + G + K A + A + Sbjct: 40 KIQGEYKYTQVGPDHNRSFIAEMTIYIKQLGRRIFAREHGSNK---KLAAQSCALSLV 94 >1qxp_A MU-like calpain; M-calpain, MU-calpain, catalytic triad, Ca(2+) requirement, hydrolase chimera; 2.80A {Rattus norvegicus} (A:350-514) Length = 165 Score = 25.6 bits (55), Expect = 4.4 Identities = 19/83 (22%), Positives = 29/83 (34%), Gaps = 13/83 (15%) Query: 99 GTNMYDFLDRLINMGMPRIRDFHGLNSRSFDGSGNFSFG--IREHIVFPEINYDKVDCVL 156 G +Y L + RDF L + S S +F + I P Y V Sbjct: 83 GFAVYQVPRELAGQPVHLKRDFF-LANASRAQSEHFINLREVSNRIRLPPGEY----IV- 136 Query: 157 GMDISICTTTRSDREAKYLLTLF 179 + +T ++E +LL F Sbjct: 137 -----VPSTFEPNKEGDFLLRFF 154 >1t4n_A Ribonuclease III; DSRBD, RNA-binding, hydrolase; NMR {Saccharomyces cerevisiae} (A:) Length = 94 Score = 25.7 bits (56), Expect = 4.4 Identities = 13/73 (17%), Positives = 21/73 (28%), Gaps = 5/73 (6%) Query: 13 EYCLRIREAMQQEFSYKNVMQIPK--IEKVVVNMGV-GESIADSKK-AESAAADLAL-IT 67 + K P +E V + V G + + K A AA+ AL Sbjct: 14 SLIGYASLRLHYVTVKKPTAVDPNSIVECRVGDGTVLGTGVGRNIKIAGIRAAENALRDK 73 Query: 68 GQKPVITRARRSI 80 + R + Sbjct: 74 KMLDFYAKQRAAA 86 >2f40_A Hypothetical protein PF1455; protein structure prediction, residual dipolar couplings, pyrococcus furious, simulated annealing; NMR {Pyrococcus furiosus dsm 3638} (A:) Length = 96 Score = 25.3 bits (55), Expect = 4.6 Identities = 6/29 (20%), Positives = 17/29 (58%) Query: 5 KYEPRLKKEYCLRIREAMQQEFSYKNVMQ 33 K + + +E + ++E ++ S+ NV++ Sbjct: 65 KLKGEVIEEKEITLQELIEGSLSWNNVLR 93 >3da4_A Colicin-M; phosphatase, antibiotic, antimicrobial, bacteriocin, plasmid, TONB box; 1.70A {Escherichia coli} PDB: 3da3_A (A:) Length = 279 Score = 25.3 bits (55), Expect = 5.1 Identities = 6/25 (24%), Positives = 14/25 (56%) Query: 30 NVMQIPKIEKVVVNMGVGESIADSK 54 + M+I +I+ ++ + VG +K Sbjct: 156 SPMKINQIKDIIKSGVVGTFPVSTK 180 >1cyg_A Cyclodextrin glucanotransferase; glycosyltransferase; 2.50A {Geobacillus stearothermophilus} (A:493-576) Length = 84 Score = 24.4 bits (53), Expect = 9.7 Identities = 6/26 (23%), Positives = 9/26 (34%), Gaps = 1/26 (3%) Query: 79 SIAGFKLRTGMPIGTKVTLRGTNMYD 104 I G +G +VT+ G Sbjct: 4 IIGHVGPMMG-QVGHQVTIDGEGFGT 28 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.324 0.140 0.410 Gapped Lambda K H 0.267 0.0620 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 1,423,020 Number of extensions: 62342 Number of successful extensions: 177 Number of sequences better than 10.0: 1 Number of HSP's gapped: 172 Number of HSP's successfully gapped: 30 Length of query: 185 Length of database: 4,956,049 Length adjustment: 83 Effective length of query: 102 Effective length of database: 2,150,234 Effective search space: 219323868 Effective search space used: 219323868 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 52 (24.0 bits)