BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780249|ref|YP_003064662.1| 50S ribosomal protein L5
[Candidatus Liberibacter asiaticus str. psy62]
         (185 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780249|ref|YP_003064662.1| 50S ribosomal protein L5 [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 185

 Score =  383 bits (984), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 185/185 (100%), Positives = 185/185 (100%)

Query: 1   MVDCKYEPRLKKEYCLRIREAMQQEFSYKNVMQIPKIEKVVVNMGVGESIADSKKAESAA 60
           MVDCKYEPRLKKEYCLRIREAMQQEFSYKNVMQIPKIEKVVVNMGVGESIADSKKAESAA
Sbjct: 1   MVDCKYEPRLKKEYCLRIREAMQQEFSYKNVMQIPKIEKVVVNMGVGESIADSKKAESAA 60

Query: 61  ADLALITGQKPVITRARRSIAGFKLRTGMPIGTKVTLRGTNMYDFLDRLINMGMPRIRDF 120
           ADLALITGQKPVITRARRSIAGFKLRTGMPIGTKVTLRGTNMYDFLDRLINMGMPRIRDF
Sbjct: 61  ADLALITGQKPVITRARRSIAGFKLRTGMPIGTKVTLRGTNMYDFLDRLINMGMPRIRDF 120

Query: 121 HGLNSRSFDGSGNFSFGIREHIVFPEINYDKVDCVLGMDISICTTTRSDREAKYLLTLFG 180
           HGLNSRSFDGSGNFSFGIREHIVFPEINYDKVDCVLGMDISICTTTRSDREAKYLLTLFG
Sbjct: 121 HGLNSRSFDGSGNFSFGIREHIVFPEINYDKVDCVLGMDISICTTTRSDREAKYLLTLFG 180

Query: 181 FPFPK 185
           FPFPK
Sbjct: 181 FPFPK 185


>gi|254780673|ref|YP_003065086.1| pyruvate dehydrogenase subunit beta [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 467

 Score = 25.4 bits (54), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 6/86 (6%)

Query: 17  RIREAMQQEFSYKNVMQIPKIEKVVVNMGVGESIADSKK-AESAAADLALITGQKPVITR 75
           ++ + + QEF  + V+  P  E     +G+G S A  K   E    + A+       I +
Sbjct: 175 KVTQGLLQEFGCERVIDTPITEHGFAGIGIGASFAGLKPIVEFMTFNFAM-----QAIDQ 229

Query: 76  ARRSIAGFKLRTGMPIGTKVTLRGTN 101
              S A  +  +G  I T +  RG N
Sbjct: 230 IINSAAKTRYMSGGQITTSIVFRGPN 255


>gi|254780489|ref|YP_003064902.1| 3-oxoacyl-(acyl carrier protein) synthase II [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 325

 Score = 23.5 bits (49), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 9/23 (39%), Positives = 13/23 (56%)

Query: 89  MPIGTKVTLRGTNMYDFLDRLIN 111
           +P G   +  GTN +DF  R+ N
Sbjct: 196 IPTGGSTSPAGTNTHDFYMRITN 218


>gi|254780317|ref|YP_003064730.1| phenylalanyl-tRNA synthetase, alpha subunit [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 366

 Score = 23.5 bits (49), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 2/29 (6%)

Query: 106 LDR--LINMGMPRIRDFHGLNSRSFDGSG 132
           LDR  ++  GMP +R+F G + R  +  G
Sbjct: 324 LDRIAMLKYGMPDVREFFGADVRWIEHYG 352


>gi|254780649|ref|YP_003065062.1| nicotinic acid mononucleotide adenylyltransferase [Candidatus
          Liberibacter asiaticus str. psy62]
          Length = 216

 Score = 23.1 bits (48), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 8/17 (47%), Positives = 14/17 (82%)

Query: 22 MQQEFSYKNVMQIPKIE 38
          MQQ  S +++M++PK+E
Sbjct: 1  MQQSQSLQDIMRMPKVE 17


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.324    0.140    0.410 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 114,651
Number of Sequences: 1233
Number of extensions: 4442
Number of successful extensions: 8
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 5
length of query: 185
length of database: 328,796
effective HSP length: 69
effective length of query: 116
effective length of database: 243,719
effective search space: 28271404
effective search space used: 28271404
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 36 (18.5 bits)