HHsearch alignment for GI: 254780250 and conserved domain: PRK08559
>PRK08559 nusG transcription antitermination protein NusG; Validated.
Probab=96.77 E-value=0.0026 Score=38.33 Aligned_cols=38 Identities=29% Similarity=0.371 Sum_probs=34.8
Q ss_pred CCCCCCEEEEEECCCCCCEEEEEEEECCCCEEEEECEE
Q ss_conf 22658699998437888646999997469989990605
Q gi|254780250|r 3 KIRTGDRVLVLAGKDKGKAGQVMGVVRKSGRAFVQGVN 40 (102)
Q Consensus 3 kikkGD~V~VisGkdKGk~G~V~~V~~k~~~ViVeGiN 40 (102)
T Consensus 94 ~i~~G~~V~v~~Gpfkg~~a~V~~Vd~~k~~vtV~l~~ 131 (153)
T PRK08559 94 GIKEGDIVELIAGPFKGEKARVVRVDESKEEVTVELLE 131 (153)
T ss_pred CCCCCCEEEEECCCCCCCCEEEEEECCCCCEEEEEEEE
T ss_conf 46899999991357699617999981668899999996