HHsearch alignment for GI: 254780250 and conserved domain: PRK08559

>PRK08559 nusG transcription antitermination protein NusG; Validated.
Probab=96.77  E-value=0.0026  Score=38.33  Aligned_cols=38  Identities=29%  Similarity=0.371  Sum_probs=34.8

Q ss_pred             CCCCCCEEEEEECCCCCCEEEEEEEECCCCEEEEECEE
Q ss_conf             22658699998437888646999997469989990605
Q gi|254780250|r    3 KIRTGDRVLVLAGKDKGKAGQVMGVVRKSGRAFVQGVN   40 (102)
Q Consensus         3 kikkGD~V~VisGkdKGk~G~V~~V~~k~~~ViVeGiN   40 (102)
T Consensus        94 ~i~~G~~V~v~~Gpfkg~~a~V~~Vd~~k~~vtV~l~~  131 (153)
T PRK08559         94 GIKEGDIVELIAGPFKGEKARVVRVDESKEEVTVELLE  131 (153)
T ss_pred             CCCCCCEEEEECCCCCCCCEEEEEECCCCCEEEEEEEE
T ss_conf             46899999991357699617999981668899999996