HHsearch alignment for GI: 254780250 and conserved domain: smart00739

>smart00739 KOW KOW (Kyprides, Ouzounis, Woese) motif. Motif in ribosomal proteins, NusG, Spt5p, KIN17 and T54.

Probab=96.46  E-value=0.0026  Score=38.25  Aligned_cols=28  Identities=46%  Similarity=0.647  Sum_probs=24.9

Q ss_pred             CCCCCCEEEEEECCCCCCEEEEEEEECC
Q ss_conf             2265869999843788864699999746
Q gi|254780250|r    3 KIRTGDRVLVLAGKDKGKAGQVMGVVRK   30 (102)
Q Consensus         3 kikkGD~V~VisGkdKGk~G~V~~V~~k   30 (102)
T Consensus         1 ~~~~G~~V~V~~G~~~g~~g~V~~i~~~   28 (28)
T smart00739        1 KFEVGDTVRVIAGPFKGKVGKVLEVDGE   28 (28)
T ss_pred             CCCCCCEEEEEECCCCCCCCEEEEECCC
T ss_conf             9402768899722557741138982389