HHsearch alignment of GI: 254780250 and MMDB domain: 1nz9_A_
>1nz9_A (A:) Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus}
Probab=96.94 E-value=0.0013 Score=39.61 Aligned_cols=34 Identities=29% Similarity=0.418 Sum_probs=32.0
Q ss_pred CCCCCEEEEEECCCCCCEEEEEEEECCCCEEEEE
Q ss_conf 2658699998437888646999997469989990
Q gi|254780250|r 4 IRTGDRVLVLAGKDKGKAGQVMGVVRKSGRAFVQ 37 (102)
Q Consensus 4 ikkGD~V~VisGkdKGk~G~V~~V~~k~~~ViVe 37 (102)
+..||.|.|++|...|-.|+|.++++.++++.|.
T Consensus 5 ~~~Gd~V~I~~GpF~g~~G~V~~id~~k~~v~V~ 38 (58)
T 1nz9_A 5 FREGDQVRVVSGPFADFTGTVTEINPERGKVKVM 38 (58)
T ss_dssp CCTTCEEEECSGGGTTCEEEEEEEETTTTEEEEE
T ss_pred CCCCCEEEECCCCCCCCEEEEEEEECCCCEEEEE
T ss_conf 1599999992468999889999990889999999