HHsearch alignment of GI: 254780250 and MMDB domain: 2jvv_A_
>2jvv_A (A:) Transcription antitermination protein NUSG; transcription factor, transcription regulation, transcription termination; NMR {Escherichia coli} PDB: 2k06_A
Probab=95.53 E-value=0.021 Score=33.07 Aligned_cols=34 Identities=26% Similarity=0.177 Sum_probs=31.2
Q ss_pred CCCCCEEEEEECCCCCCEEEEEEEECCCCEEEEE
Q ss_conf 2658699998437888646999997469989990
Q gi|254780250|r 4 IRTGDRVLVLAGKDKGKAGQVMGVVRKSGRAFVQ 37 (102)
Q Consensus 4 ikkGD~V~VisGkdKGk~G~V~~V~~k~~~ViVe 37 (102)
+..||.|.|++|..+|..|.|.++.+.+++++|+
T Consensus 128 ~~~G~~VrI~~Gpf~G~~g~i~~v~~~~~r~~v~ 161 (181)
T 2jvv_A 128 FEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVS 161 (181)
T ss_dssp CCTTEEEEECSSTTTTEEEEEEEEETTTTEEEEE
T ss_pred EECCCEEEEECCCCCCCEEEEEEECCCCCEEEEE
T ss_conf 2478689990478999579999983888999999