HHsearch alignment of GI: 254780250 and MMDB domain: 2jvv_A_

>2jvv_A (A:) Transcription antitermination protein NUSG; transcription factor, transcription regulation, transcription termination; NMR {Escherichia coli} PDB: 2k06_A
Probab=95.53  E-value=0.021  Score=33.07  Aligned_cols=34  Identities=26%  Similarity=0.177  Sum_probs=31.2

Q ss_pred             CCCCCEEEEEECCCCCCEEEEEEEECCCCEEEEE
Q ss_conf             2658699998437888646999997469989990
Q gi|254780250|r    4 IRTGDRVLVLAGKDKGKAGQVMGVVRKSGRAFVQ   37 (102)
Q Consensus         4 ikkGD~V~VisGkdKGk~G~V~~V~~k~~~ViVe   37 (102)
                      +..||.|.|++|..+|..|.|.++.+.+++++|+
T Consensus       128 ~~~G~~VrI~~Gpf~G~~g~i~~v~~~~~r~~v~  161 (181)
T 2jvv_A          128 FEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVS  161 (181)
T ss_dssp             CCTTEEEEECSSTTTTEEEEEEEEETTTTEEEEE
T ss_pred             EECCCEEEEECCCCCCCEEEEEEECCCCCEEEEE
T ss_conf             2478689990478999579999983888999999