Query gi|254780250|ref|YP_003064663.1| 50S ribosomal protein L24 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 102
No_of_seqs 104 out of 1662
Neff 5.0
Searched_HMMs 33803
Date Tue May 24 06:48:40 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780250.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >2zjr_R 50S ribosomal protein 99.9 2.5E-27 7.5E-32 168.4 4.1 73 2-74 14-87 (87)
2 >2j01_Y 50S ribosomal protein 99.9 4.7E-28 1.4E-32 172.3 -2.7 73 2-74 5-78 (78)
3 >1vq8_T 50S ribosomal protein 99.9 2.9E-26 8.5E-31 162.7 3.1 75 2-86 22-97 (101)
4 >3bbo_W Ribosomal protein L24; 99.9 1.1E-26 3.4E-31 164.8 -1.2 73 2-74 67-140 (140)
5 >3i1n_U 50S ribosomal protein 99.8 6.9E-22 2E-26 138.9 1.0 61 1-101 2-63 (63)
6 >3i1n_U 50S ribosomal protein 99.4 4.6E-13 1.4E-17 90.9 4.1 39 26-64 1-41 (41)
7 >2ftc_N Mitochondrial ribosoma 98.5 2.3E-07 6.8E-12 60.0 5.1 31 7-37 1-31 (31)
8 >1nz9_A Transcription antiterm 96.9 0.0013 3.8E-08 39.6 4.8 34 4-37 5-38 (58)
9 >2wwb_L 60S ribosomal protein 96.8 0.00076 2.2E-08 40.9 2.5 23 3-25 24-46 (58)
10 >2do3_A Transcription elongati 96.0 0.0086 2.6E-07 35.1 4.4 29 2-30 16-44 (69)
11 >2jvv_A Transcription antiterm 95.5 0.021 6.1E-07 33.1 4.6 34 4-37 128-161 (181)
12 >2zkr_t 60S ribosomal protein 95.1 0.01 3E-07 34.7 2.0 25 2-26 11-35 (42)
13 >2joy_A 50S ribosomal protein 92.8 0.12 3.5E-06 28.9 3.7 38 1-39 1-38 (63)
14 >2e6z_A Transcription elongati 86.4 0.39 1.2E-05 26.1 2.0 28 4-31 8-35 (59)
15 >2ckk_A KIN17; beta barrel, ri 82.7 2.1 6.3E-05 22.1 4.5 31 7-37 2-32 (55)
16 >2e70_A Transcription elongati 72.4 5 0.00015 20.1 3.9 33 6-38 20-52 (71)
17 >3kw2_A Probable R-RNA methylt 69.5 6.6 0.0002 19.4 4.0 37 2-38 31-67 (74)
18 >3kbg_A 30S ribosomal protein 68.9 8.5 0.00025 18.9 4.6 36 3-38 57-96 (132)
19 >3dcl_A TM1086; SAD, structura 64.4 11 0.00031 18.3 5.0 33 5-37 35-67 (89)
20 >1vhy_A Hypothetical protein H 62.6 11 0.00032 18.3 4.0 36 2-37 34-69 (77)
21 >2zzd_A Thiocyanate hydrolase 55.3 15 0.00045 17.5 3.7 28 2-29 5-42 (96)
22 >3hht_B NitrIle hydratase beta 54.7 16 0.00047 17.4 3.7 28 2-29 3-40 (92)
23 >1ugp_B NitrIle hydratase beta 53.5 17 0.00049 17.3 3.7 28 2-29 4-41 (93)
24 >2zkr_q 60S ribosomal protein 53.2 7.7 0.00023 19.1 1.9 54 1-54 31-104 (160)
25 >1vhk_A Hypothetical protein Y 51.2 18 0.00053 17.1 3.8 33 2-34 35-67 (77)
26 >1z85_A Hypothetical protein T 49.6 19 0.00057 16.9 3.9 35 2-36 39-73 (82)
27 >3jyw_Q 60S ribosomal protein 48.6 3.9 0.00011 20.7 -0.2 53 1-53 30-102 (116)
28 >2qdy_B NitrIle hydratase subu 39.9 28 0.00081 16.1 3.4 28 2-29 8-45 (99)
29 >2id0_A Exoribonuclease 2; RNA 39.7 28 0.00082 16.1 4.1 29 2-30 33-62 (64)
30 >2p17_A Pirin-like protein; GK 36.9 20 0.00058 16.9 1.9 92 6-101 22-125 (156)
31 >1o54_A SAM-dependent O-methyl 33.7 26 0.00077 16.2 2.1 18 1-18 17-34 (80)
32 >3gqh_A Preneck appendage prot 27.8 19 0.00057 16.9 0.6 28 73-100 9-37 (109)
33 >1vq8_Q 50S ribosomal protein 24.1 52 0.0016 14.6 3.9 31 1-31 31-71 (96)
34 >1nlq_A Nucleoplasmin-like pro 22.5 47 0.0014 14.8 1.8 38 60-97 29-69 (108)
35 >1i9g_A Hypothetical protein R 20.4 63 0.0019 14.1 2.5 18 1-18 4-21 (67)
No 1
>>2zjr_R 50S ribosomal protein L24; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} (R:1-87)
Probab=99.93 E-value=2.5e-27 Score=168.38 Aligned_cols=73 Identities=30% Similarity=0.621 Sum_probs=69.9
Q ss_pred CCCCCCCEEEEEECCCCCCEEEEEEEECCCCEEEEECEEEEEEEECCCC-CCCCEEEEEEECCCHHHEEEECCC
Q ss_conf 7226586999984378886469999974699899906059743205777-656517999704686657889789
Q gi|254780250|r 2 EKIRTGDRVLVLAGKDKGKAGQVMGVVRKSGRAFVQGVNIVKRHQRQTP-NKEAGIISKEASIHLSNLSLIDKD 74 (102)
Q Consensus 2 ~kikkGD~V~VisGkdKGk~G~V~~V~~k~~~ViVeGiN~~kkh~k~~~-~~~gGii~~E~pIh~SNV~lvd~~ 74 (102)
.+|++||+|+||+|+|||++|+|++|++++|+|+|||+|+.++|++|++ +++||++++|+|||+|||+|+||+
T Consensus 14 ~~i~kGD~V~Vi~G~dkGk~G~V~~V~~~~~~ViVegvN~~~~~~k~~~~~~~g~~~~~e~Pi~~SnV~lvdpk 87 (87)
T 2zjr_R 14 LHFKKGDTVIVLSGKHKGQTGKVLLALPRDQKVVVEGVNVITKNVKPSMTNPQGGQEQRELALHASKVALVDPE 87 (87)
T ss_dssp CSSCTTSEEECCSSSSTTCEEEEEEEETTTTEEEESSSCBCCCCCCTTSSSCCCCCCCBCCCBCSSSEECBSSS
T ss_pred CEEECCCEEEEEECCCCCCEEEEEEEECCCCEEEEECCEEEEEEECCCCCCCCCCEEEEEEEEEHHHEEEECCC
T ss_conf 01208999999255899961689999888999999574899986056444788873777640886777888386
No 2
>>2j01_Y 50S ribosomal protein L24; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} (Y:1-78)
Probab=99.93 E-value=4.7e-28 Score=172.34 Aligned_cols=73 Identities=41% Similarity=0.607 Sum_probs=70.0
Q ss_pred CCCCCCCEEEEEECCCCCCEEEEEEEECCCCEEEEECEEEEEEEECCCC-CCCCEEEEEEECCCHHHEEEECCC
Q ss_conf 7226586999984378886469999974699899906059743205777-656517999704686657889789
Q gi|254780250|r 2 EKIRTGDRVLVLAGKDKGKAGQVMGVVRKSGRAFVQGVNIVKRHQRQTP-NKEAGIISKEASIHLSNLSLIDKD 74 (102)
Q Consensus 2 ~kikkGD~V~VisGkdKGk~G~V~~V~~k~~~ViVeGiN~~kkh~k~~~-~~~gGii~~E~pIh~SNV~lvd~~ 74 (102)
.+|++||+|+||+|+||||+|+|++|++++++|+|||+|+.++|.+|++ +++||++++|+|||+|||+|+||.
T Consensus 5 ~~i~~GD~V~Vi~G~dKGk~G~V~~V~~~~~~v~VeGvN~~~k~~k~~~~~~~g~i~~~e~pih~SnV~lvdPa 78 (78)
T 2j01_Y 5 MHVKKGDTVLVASGKYKGRVGKVKEVLPKKYAVIVEGVNIVKKAVRVSPKYPQGGFIEKEAPLHASKVRPICPA 78 (78)
T ss_dssp CCSCCSSCEECCSSTTSSCCBSCCCCCCTTCBCCTTSCCCCCCCCCSCCCSSCCCSSCCCCCCBGGGCEECSSS
T ss_pred CEEECCCEEEEEECCCCCCEEEEEEEECCCCEEEEECCEEEEEECCCCCCCCCCCEEEEEEEEEHHHCEEEECC
T ss_conf 47557999999047899963789999998999999586789873167777788857988835876658358277
No 3
>>1vq8_T 50S ribosomal protein L24P; ribosome 50S, protein-protein complex, RNA-RNA complex, protein-RNA complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} (T:20-120)
Probab=99.92 E-value=2.9e-26 Score=162.66 Aligned_cols=75 Identities=23% Similarity=0.267 Sum_probs=70.7
Q ss_pred CCCCCCCEEEEEECCCCCCEEEEEEEECCCCEEEEECEEEEEEEECCCCCCCCEEEEEEECCCHHHEEEECC-CCCEEEE
Q ss_conf 722658699998437888646999997469989990605974320577765651799970468665788978-9962288
Q gi|254780250|r 2 EKIRTGDRVLVLAGKDKGKAGQVMGVVRKSGRAFVQGVNIVKRHQRQTPNKEAGIISKEASIHLSNLSLIDK-DGKQVRV 80 (102)
Q Consensus 2 ~kikkGD~V~VisGkdKGk~G~V~~V~~k~~~ViVeGiN~~kkh~k~~~~~~gGii~~E~pIh~SNV~lvd~-~~k~trv 80 (102)
++|++||+|+||+|+|||++|+|++|++++++|+|||+|+.++|.+ ++|+|||+|||||+|| +++|+|+
T Consensus 22 ~~I~~GD~V~Vi~G~dkGk~GkV~~V~~~~~~V~Vegin~~k~~~k----------~~e~pIh~SnV~lv~~~~~~~~Rv 91 (101)
T 1vq8_T 22 VRVNAGDTVEVLRGDFAGEEGEVINVDLDKAVIHVEDVTLEKTDGE----------EVPRPLDTSNVRVTDLDLEDEKRE 91 (101)
T ss_dssp EECCTTCEEEECSSTTTTCEEEEEEEETTTTEEEETTCEEECSSSC----------EEECCBCGGGEEEEECCCCCHHHH
T ss_pred CCEECCCEEEEEECCCCCCCCEEEEEECCCCEEEECCEEEEECCCC----------EEECCCCHHHEEEEECCCCCCHHH
T ss_conf 4031699999915478997513999987789999966189954798----------251544648979983767971253
Q ss_pred EEEEEC
Q ss_conf 999999
Q gi|254780250|r 81 GFSFVD 86 (102)
Q Consensus 81 ~~~~~d 86 (102)
+|.+.+
T Consensus 92 ~~~~~~ 97 (101)
T 1vq8_T 92 ARLESE 97 (101)
T ss_dssp HHHHCS
T ss_pred HHHHCC
T ss_conf 333233
No 4
>>3bbo_W Ribosomal protein L24; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} (W:1-140)
Probab=99.91 E-value=1.1e-26 Score=164.84 Aligned_cols=73 Identities=30% Similarity=0.557 Sum_probs=69.7
Q ss_pred CCCCCCCEEEEEECCCCCCEEEEEEEECCCCEEEEECEEEEEEEECCCC-CCCCEEEEEEECCCHHHEEEECCC
Q ss_conf 7226586999984378886469999974699899906059743205777-656517999704686657889789
Q gi|254780250|r 2 EKIRTGDRVLVLAGKDKGKAGQVMGVVRKSGRAFVQGVNIVKRHQRQTP-NKEAGIISKEASIHLSNLSLIDKD 74 (102)
Q Consensus 2 ~kikkGD~V~VisGkdKGk~G~V~~V~~k~~~ViVeGiN~~kkh~k~~~-~~~gGii~~E~pIh~SNV~lvd~~ 74 (102)
.+|++||+|+||+|+|||++|+|++|++++++|+|||+|+.++|.++++ +++|+++++|+|||+|||+|+||+
T Consensus 67 ~~i~kGD~V~Vi~G~dkGk~G~V~~V~~~~~~V~Vegvn~~~~~~~~~~~~~~g~~~~~e~pi~~SnV~lvdpk 140 (140)
T 3bbo_W 67 RHVKVGDTVKVISGGEKGKIGEISKIHKHNSTVIIKDLNFKTKHVKSKEEGEQGQIIKIEAAIHSSNVMLILKE 140 (140)
T ss_dssp CCSCCSSCEEECSSSSTTCCCSCCCCCSSSCCCCCSSCCCCCCBCCSCCSSSCCBSSCCCCCCCGGGEEECSSS
T ss_pred EECCCCCEEEEEECCCCCCEEEEEEEECCCCEEEEEEEEEEEEECCCCCCCCCCCEEEEECCEEHHHEEEECCC
T ss_conf 01058999999147899932159999877999999745689960277665578845778614756886787688
No 5
>>3i1n_U 50S ribosomal protein L24; ribosome structure, protein-RNA complex, acetylation, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA- binding, methylation; 3.19A {Escherichia coli k-12} PDB: 1vs8_U 1vs6_U 3i1p_U 3i1r_U 3i1t_U 3i20_U 3i22_U 3e1b_O 3e1d_O 2qam_U* 1p85_S 1p86_S 2awb_U 2aw4_U 2i2v_U 2i2t_U* 2qao_U* 2qba_U* 2qbc_U* 2qbe_U ... (U:1-25,U:67-104)
Probab=99.83 E-value=6.9e-22 Score=138.85 Aligned_cols=61 Identities=52% Similarity=0.847 Sum_probs=57.9
Q ss_pred CCCCCCCCEEEEEECCCCCCEEEEEEEECCCCEEEEECEEEEEEEECCCCCCCCEEEEEEECCCHHHEEEECC-CCCEEE
Q ss_conf 9722658699998437888646999997469989990605974320577765651799970468665788978-996228
Q gi|254780250|r 1 MEKIRTGDRVLVLAGKDKGKAGQVMGVVRKSGRAFVQGVNIVKRHQRQTPNKEAGIISKEASIHLSNLSLIDK-DGKQVR 79 (102)
Q Consensus 1 M~kikkGD~V~VisGkdKGk~G~V~~V~~k~~~ViVeGiN~~kkh~k~~~~~~gGii~~E~pIh~SNV~lvd~-~~k~tr 79 (102)
||+|++||+|+||||+|+|++|+| +|||||+|| +++|||
T Consensus 2 ~~~ikkgD~V~vi~Gkdkgk~g~v----------------------------------------vSNVmlvdp~~gkptR 41 (63)
T 3i1n_U 2 AAKIRRDDEVIVLTGKDKGKRGKV----------------------------------------VSNVAIFNAATGKADR 41 (63)
T ss_dssp CCSSCSSCEEEECSSSSTTCEEEE----------------------------------------GGGEEEBCSSSSSBCC
T ss_pred CCCCCCCCEEEEEECCCCCCCCEE----------------------------------------HHHEEEECCCCCCCEE
T ss_conf 763068999999479889985279----------------------------------------6788888286898558
Q ss_pred EEEEEECCEEEEEECCCCCEEC
Q ss_conf 8999999979999815687715
Q gi|254780250|r 80 VGFSFVDGKKIRIAKRSGEPID 101 (102)
Q Consensus 80 v~~~~~dG~kvRv~kksg~~id 101 (102)
|+|+++||+|+|+||+||++|.
T Consensus 42 VG~k~edGkKVRv~KksGe~Ik 63 (63)
T 3i1n_U 42 VGFRFEDGKKVRFFKSNSETIK 63 (63)
T ss_dssp CCBCCSSSSCCBCCTTTCCCC-
T ss_pred EEEEEECCEEEEEEECCCCCCC
T ss_conf 9999979939999914888848
No 6
>>3i1n_U 50S ribosomal protein L24; ribosome structure, protein-RNA complex, acetylation, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA- binding, methylation; 3.19A {Escherichia coli k-12} PDB: 1vs8_U 1vs6_U 3i1p_U 3i1r_U 3i1t_U 3i20_U 3i22_U 3e1b_O 3e1d_O 2qam_U* 1p85_S 1p86_S 2awb_U 2aw4_U 2i2v_U 2i2t_U* 2qao_U* 2qba_U* 2qbc_U* 2qbe_U ... (U:26-66)
Probab=99.36 E-value=4.6e-13 Score=90.91 Aligned_cols=39 Identities=46% Similarity=0.810 Sum_probs=36.7
Q ss_pred EEECCCCEEEEECEEEEEEEECCCC--CCCCEEEEEEECCC
Q ss_conf 9974699899906059743205777--65651799970468
Q gi|254780250|r 26 GVVRKSGRAFVQGVNIVKRHQRQTP--NKEAGIISKEASIH 64 (102)
Q Consensus 26 ~V~~k~~~ViVeGiN~~kkh~k~~~--~~~gGii~~E~pIh 64 (102)
++++++++|+|||+|+++||+||++ +++|||+++|+|||
T Consensus 1 kv~~~~~rViVEGvN~vkkH~Kp~~~~~~~GGIi~~EaPIH 41 (41)
T 3i1n_U 1 KNVLSSGKVIVEGINLVKKHQKPVPALNQPGGIVEKEAAIQ 41 (41)
T ss_dssp EEECTTSEEEETTSSEEEECCCCCSSSSCCCCCEEEECCEE
T ss_pred EEEECCCEEEEECCEEEEEEECCCCCCCCCCCEEEEECCEE
T ss_conf 99968997999831458773358856577786699984686
No 7
>>2ftc_N Mitochondrial ribosomal protein L24; mitochondrial ribosome, large ribosomal subunit, ribosomal RNA; 12.10A {Bos taurus} PDB: 3iy9_N (N:1-31)
Probab=98.46 E-value=2.3e-07 Score=59.98 Aligned_cols=31 Identities=45% Similarity=0.737 Sum_probs=29.7
Q ss_pred CCEEEEEECCCCCCEEEEEEEECCCCEEEEE
Q ss_conf 8699998437888646999997469989990
Q gi|254780250|r 7 GDRVLVLAGKDKGKAGQVMGVVRKSGRAFVQ 37 (102)
Q Consensus 7 GD~V~VisGkdKGk~G~V~~V~~k~~~ViVe 37 (102)
||.|.|++|+|+||+|.|.+|++++|||+|.
T Consensus 1 GD~VEil~GkDkGKQG~V~qvi~erNWViv~ 31 (31)
T 2ftc_N 1 GDTVEILEGKDAGKQGKVVQVIRQRNWVVVG 31 (31)
T ss_pred CCEEEEEECCCCCCEEEEEEEECCCCEEEEE
T ss_conf 9999991589999616999999879999991
No 8
>>1nz9_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} (A:)
Probab=96.94 E-value=0.0013 Score=39.61 Aligned_cols=34 Identities=29% Similarity=0.418 Sum_probs=32.0
Q ss_pred CCCCCEEEEEECCCCCCEEEEEEEECCCCEEEEE
Q ss_conf 2658699998437888646999997469989990
Q gi|254780250|r 4 IRTGDRVLVLAGKDKGKAGQVMGVVRKSGRAFVQ 37 (102)
Q Consensus 4 ikkGD~V~VisGkdKGk~G~V~~V~~k~~~ViVe 37 (102)
+..||.|.|++|...|-.|+|.++++.++++.|.
T Consensus 5 ~~~Gd~V~I~~GpF~g~~G~V~~id~~k~~v~V~ 38 (58)
T 1nz9_A 5 FREGDQVRVVSGPFADFTGTVTEINPERGKVKVM 38 (58)
T ss_dssp CCTTCEEEECSGGGTTCEEEEEEEETTTTEEEEE
T ss_pred CCCCCEEEECCCCCCCCEEEEEEEECCCCEEEEE
T ss_conf 1599999992468999889999990889999999
No 9
>>2wwb_L 60S ribosomal protein L26-A; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Triticum aestivum} PDB: 2wwa_L 2ww9_L 1s1i_U (L:26-70,L:100-112)
Probab=96.77 E-value=0.00076 Score=40.86 Aligned_cols=23 Identities=43% Similarity=0.775 Sum_probs=21.3
Q ss_pred CCCCCCEEEEEECCCCCCEEEEE
Q ss_conf 22658699998437888646999
Q gi|254780250|r 3 KIRTGDRVLVLAGKDKGKAGQVM 25 (102)
Q Consensus 3 kikkGD~V~VisGkdKGk~G~V~ 25 (102)
.|++||+|+|+.|.++|.+|+|-
T Consensus 24 pIrkgDeV~V~RG~~kG~EGkV~ 46 (58)
T 2wwb_L 24 PIRRDDEVLVVRGSKKGQEGKIH 46 (58)
T ss_dssp ECCTTSEEEECSSSSTTCEEEEC
T ss_pred EEECCCEEEEEECCCCCCCCEEC
T ss_conf 06079999997743489413696
No 10
>>2do3_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:)
Probab=96.03 E-value=0.0086 Score=35.11 Aligned_cols=29 Identities=31% Similarity=0.565 Sum_probs=25.5
Q ss_pred CCCCCCCEEEEEECCCCCCEEEEEEEECC
Q ss_conf 72265869999843788864699999746
Q gi|254780250|r 2 EKIRTGDRVLVLAGKDKGKAGQVMGVVRK 30 (102)
Q Consensus 2 ~kikkGD~V~VisGkdKGk~G~V~~V~~k 30 (102)
..++.||-|+||+|++.|.+|.|.++...
T Consensus 16 K~F~~GDhVkVi~G~~~getGlVV~v~~d 44 (69)
T 2do3_A 16 KYFKMGDHVKVIAGRFEGDTGLIVRVEEN 44 (69)
T ss_dssp SSCCTTCEEEESSSTTTTCEEEEEEECSS
T ss_pred ECCCCCCEEEEECCEECCCCEEEEEEECC
T ss_conf 20579983899064686962899999399
No 11
>>2jvv_A Transcription antitermination protein NUSG; transcription factor, transcription regulation, transcription termination; NMR {Escherichia coli} PDB: 2k06_A (A:)
Probab=95.53 E-value=0.021 Score=33.07 Aligned_cols=34 Identities=26% Similarity=0.177 Sum_probs=31.2
Q ss_pred CCCCCEEEEEECCCCCCEEEEEEEECCCCEEEEE
Q ss_conf 2658699998437888646999997469989990
Q gi|254780250|r 4 IRTGDRVLVLAGKDKGKAGQVMGVVRKSGRAFVQ 37 (102)
Q Consensus 4 ikkGD~V~VisGkdKGk~G~V~~V~~k~~~ViVe 37 (102)
+..||.|.|++|..+|..|.|.++.+.+++++|+
T Consensus 128 ~~~G~~VrI~~Gpf~G~~g~i~~v~~~~~r~~v~ 161 (181)
T 2jvv_A 128 FEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVS 161 (181)
T ss_dssp CCTTEEEEECSSTTTTEEEEEEEEETTTTEEEEE
T ss_pred EECCCEEEEECCCCCCCEEEEEEECCCCCEEEEE
T ss_conf 2478689990478999579999983888999999
No 12
>>2zkr_t 60S ribosomal protein L26; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} (t:37-68,t:101-110)
Probab=95.13 E-value=0.01 Score=34.74 Aligned_cols=25 Identities=32% Similarity=0.315 Sum_probs=21.5
Q ss_pred CCCCCCCEEEEEECCCCCCEEEEEE
Q ss_conf 7226586999984378886469999
Q gi|254780250|r 2 EKIRTGDRVLVLAGKDKGKAGQVMG 26 (102)
Q Consensus 2 ~kikkGD~V~VisGkdKGk~G~V~~ 26 (102)
+-|++||+|+|+.|.+||.+|+-.+
T Consensus 11 lPIRKdDeV~VvRG~~KG~eGk~~~ 35 (42)
T 2zkr_t 11 MPIRKDDEVQVVRGHYKGQQIGPSK 35 (42)
T ss_dssp CBCCTTCEEEECSSTTTTCCSEGGG
T ss_pred EEECCCCEEEEEECCCCCCCCCCCE
T ss_conf 0103799999975787887586621
No 13
>>2joy_A 50S ribosomal protein L14E; protein solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Sulfolobus solfataricus} (A:1-63)
Probab=92.77 E-value=0.12 Score=28.92 Aligned_cols=38 Identities=18% Similarity=0.407 Sum_probs=33.8
Q ss_pred CCCCCCCCEEEEEECCCCCCEEEEEEEECCCCEEEEECE
Q ss_conf 972265869999843788864699999746998999060
Q gi|254780250|r 1 MEKIRTGDRVLVLAGKDKGKAGQVMGVVRKSGRAFVQGV 39 (102)
Q Consensus 1 M~kikkGD~V~VisGkdKGk~G~V~~V~~k~~~ViVeGi 39 (102)
|.=+..|--|.+.+|++.||...|.+++.. |+++|+|.
T Consensus 1 mkfve~GrVvii~~G~~aGK~avIv~iid~-~~~lVdGp 38 (63)
T 2joy_A 1 MPAIEVGRICVKVKGREAGSKCVIVDIIDD-NFVLVTGP 38 (63)
T ss_dssp CCSSSTTEEEECSSSSTTCCEEEEEEECSS-SCEEEECC
T ss_pred CCCEECCEEEEEECCCCCCCEEEEEEEECC-CEEEEECC
T ss_conf 995654689999507888978999999779-97999798
No 14
>>2e6z_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:)
Probab=86.35 E-value=0.39 Score=26.11 Aligned_cols=28 Identities=25% Similarity=0.374 Sum_probs=24.9
Q ss_pred CCCCCEEEEEECCCCCCEEEEEEEECCC
Q ss_conf 2658699998437888646999997469
Q gi|254780250|r 4 IRTGDRVLVLAGKDKGKAGQVMGVVRKS 31 (102)
Q Consensus 4 ikkGD~V~VisGkdKGk~G~V~~V~~k~ 31 (102)
+..||.|.|+.|.-+|-+|+|.++.-..
T Consensus 8 f~pGD~VeV~~GEl~~l~G~V~sv~gd~ 35 (59)
T 2e6z_A 8 FQPGDNVEVCEGELINLQGKILSVDGNK 35 (59)
T ss_dssp CCTTSEEEECSSTTTTCEEEECCCBTTE
T ss_pred CCCCCEEEEECCEECCCEEEEEEECCCE
T ss_conf 3899989992277537799999970998
No 15
>>2ckk_A KIN17; beta barrel, ribosomal protein, ribonucleoprotein, nuclear protein; 1.45A {Homo sapiens} (A:73-127)
Probab=82.66 E-value=2.1 Score=22.11 Aligned_cols=31 Identities=32% Similarity=0.517 Sum_probs=27.8
Q ss_pred CCEEEEEECCCCCCEEEEEEEECCCCEEEEE
Q ss_conf 8699998437888646999997469989990
Q gi|254780250|r 7 GDRVLVLAGKDKGKAGQVMGVVRKSGRAFVQ 37 (102)
Q Consensus 7 GD~V~VisGkdKGk~G~V~~V~~k~~~ViVe 37 (102)
|-.|.|+.|.++|.+++.++++.++..+.|+
T Consensus 2 G~~V~VvNG~yRG~~a~L~~i~e~~f~a~i~ 32 (55)
T 2ckk_A 2 GKRILVLNGGYRGNEGTLESINEKTFSATIV 32 (55)
T ss_dssp TCEEEECSSTTTTCEEEEEEEEGGGTEEEEE
T ss_pred CCEEEEEECCCCCCEEEEEEEECCCCEEEEE
T ss_conf 9959998567578699999993658889999
No 16
>>2e70_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:)
Probab=72.41 E-value=5 Score=20.09 Aligned_cols=33 Identities=24% Similarity=0.334 Sum_probs=26.5
Q ss_pred CCCEEEEEECCCCCCEEEEEEEECCCCEEEEEC
Q ss_conf 586999984378886469999974699899906
Q gi|254780250|r 6 TGDRVLVLAGKDKGKAGQVMGVVRKSGRAFVQG 38 (102)
Q Consensus 6 kGD~V~VisGkdKGk~G~V~~V~~k~~~ViVeG 38 (102)
.|-+|.|..|.+||-.|.|..+....-+|-..-
T Consensus 20 iGktV~I~~G~yKG~~G~Vkd~t~~~~rVeLhs 52 (71)
T 2e70_A 20 IGQTVRISQGPYKGYIGVVKDATESTARVELHS 52 (71)
T ss_dssp TTSEEEECSSTTTTCEEEEEEECSSCEEEEESS
T ss_pred CCCEEEEEECCCCCEEEEEEECCCCEEEEEECC
T ss_conf 588899965276887889996528869999836
No 17
>>3kw2_A Probable R-RNA methyltransferase; structural genomics, unknown function, PSI-2, protein structure initiative; HET: MSE ADN; 2.00A {Porphyromonas gingivalis atcc 33277} (A:1-74)
Probab=69.52 E-value=6.6 Score=19.45 Aligned_cols=37 Identities=24% Similarity=0.235 Sum_probs=31.2
Q ss_pred CCCCCCCEEEEEECCCCCCEEEEEEEECCCCEEEEEC
Q ss_conf 7226586999984378886469999974699899906
Q gi|254780250|r 2 EKIRTGDRVLVLAGKDKGKAGQVMGVVRKSGRAFVQG 38 (102)
Q Consensus 2 ~kikkGD~V~VisGkdKGk~G~V~~V~~k~~~ViVeG 38 (102)
++.+.||.|.+..|...--.++|..+.++.-.+-|..
T Consensus 31 lR~k~Gd~i~l~dg~g~~~~a~I~~i~~~~~~~~i~e 67 (74)
T 3kw2_A 31 LRXQAGDRLRLTDGRGSFFDAVIETADRKSCYVSVCG 67 (74)
T ss_dssp SCCCTTCEEEEECSBSEEEEEEEEEECSSCEEEEEEE
T ss_pred CCCCCCCEEEEEECCCCEEEEEEEEECCCEEEEEEEC
T ss_conf 7589999899997989889999999128769998620
No 18
>>3kbg_A 30S ribosomal protein S4E; RPS4E, RS4E_theac, TAR28, NESG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.75A {Thermoplasma acidophilum} (A:82-213)
Probab=68.89 E-value=8.5 Score=18.86 Aligned_cols=36 Identities=19% Similarity=0.371 Sum_probs=28.3
Q ss_pred CCCCCCEEEEEECCCCCCEEEEEEEECCC----CEEEEEC
Q ss_conf 22658699998437888646999997469----9899906
Q gi|254780250|r 3 KIRTGDRVLVLAGKDKGKAGQVMGVVRKS----GRAFVQG 38 (102)
Q Consensus 3 kikkGD~V~VisGkdKGk~G~V~~V~~k~----~~ViVeG 38 (102)
++..|..+.|..|+..|..|+|..+.+.. |.|.++.
T Consensus 57 ~fe~G~l~~vtgG~n~GrvG~I~~i~~~~~s~~~~V~i~d 96 (132)
T 3kbg_A 57 KXQPGNKAYITAGSHVNQTGTISKIEAKEGSSANLVHFQE 96 (132)
T ss_dssp CCSTTCEEEECSSTTTTCEEEEEEECCCSCC--CEEEETT
T ss_pred ECCCCCEEEEECCEECCEEEEEEEEEECCCCCCEEEEECC
T ss_conf 4379999999799724507999999961688734999704
No 19
>>3dcl_A TM1086; SAD, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 2.25A {Thermotoga maritima} (A:10-23,A:65-139)
Probab=64.36 E-value=11 Score=18.35 Aligned_cols=33 Identities=30% Similarity=0.481 Sum_probs=27.4
Q ss_pred CCCCEEEEEECCCCCCEEEEEEEECCCCEEEEE
Q ss_conf 658699998437888646999997469989990
Q gi|254780250|r 5 RTGDRVLVLAGKDKGKAGQVMGVVRKSGRAFVQ 37 (102)
Q Consensus 5 kkGD~V~VisGkdKGk~G~V~~V~~k~~~ViVe 37 (102)
..|.+..|+||.-||.+|.|+-=---.+.|+|+
T Consensus 35 CiGN~A~VvSG~AKG~~G~VtGkHGGieHVlVd 67 (89)
T 3dcl_A 35 CIGNEVIVXSGDAKGSRGFVTGKHGGVNHVLVH 67 (89)
T ss_dssp CBTCEEEECSSTTTTCEEEEEEEETTTTEEEEE
T ss_pred ECCCEEEEEECCCCCCCCEEEECCCCEEEEEEE
T ss_conf 328653897124679814695036875679997
No 20
>>1vhy_A Hypothetical protein HI0303; PSI, protein structure initiative, NEW YORK SGX research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Haemophilus influenzae} (A:1-77)
Probab=62.65 E-value=11 Score=18.31 Aligned_cols=36 Identities=11% Similarity=0.232 Sum_probs=29.7
Q ss_pred CCCCCCCEEEEEECCCCCCEEEEEEEECCCCEEEEE
Q ss_conf 722658699998437888646999997469989990
Q gi|254780250|r 2 EKIRTGDRVLVLAGKDKGKAGQVMGVVRKSGRAFVQ 37 (102)
Q Consensus 2 ~kikkGD~V~VisGkdKGk~G~V~~V~~k~~~ViVe 37 (102)
++++.||.|.+..|...--.++|..+.++.-.+-|.
T Consensus 34 LR~~~Gd~i~l~dg~g~~~~a~I~~i~~~~~~~~i~ 69 (77)
T 1vhy_A 34 LRXTEGEQLELFDGSNHIYPAKIIESNKKSVKVEIL 69 (77)
T ss_dssp SCCCTTCEEEEECSSSEEEEEEEEEECSSCEEEEEC
T ss_pred CCCCCCCEEEEEECCCCEEEEEEEECCCCCCHHHHH
T ss_conf 838999999999798988999998725541111100
No 21
>>2zzd_A Thiocyanate hydrolase subunit alpha; scnase, cobalt, metalloprotein, sulfenic acid, sulfinic acid, nitrIle hydratase, carbonyl sulfide; HET: FRU TLA BGC; 1.78A {Thiobacillus thioparus} PDB: 2dd4_A 2dxb_A 2dd5_A* 2dxc_A* (A:31-126)
Probab=55.33 E-value=15 Score=17.49 Aligned_cols=28 Identities=29% Similarity=0.487 Sum_probs=21.7
Q ss_pred CCCCCCCEEEEEECC----------CCCCEEEEEEEEC
Q ss_conf 722658699998437----------8886469999974
Q gi|254780250|r 2 EKIRTGDRVLVLAGK----------DKGKAGQVMGVVR 29 (102)
Q Consensus 2 ~kikkGD~V~VisGk----------dKGk~G~V~~V~~ 29 (102)
.+++.||.|.|..-. =+||+|+|..+.-
T Consensus 5 prF~vGD~Vrvr~~~~~~HtRlP~Y~RGk~G~I~~~~g 42 (96)
T 2zzd_A 5 SKFNVGDRVRIKDLPDLFYTRTMTYTRGATGTIVRLVY 42 (96)
T ss_dssp CSSCTTCEEEECCCCCSSCCSSCGGGTTCEEEEEEEEE
T ss_pred CCCCCCCEEEEEECCCCCCEECCHHHCCCEEEEEEEEC
T ss_conf 94589999998217999832485677888679999855
No 22
>>3hht_B NitrIle hydratase beta subunit; alpha and beta proteins (A+B), lyase; 1.16A {Geobacillus pallidus} PDB: 2dpp_B 1v29_B (B:138-229)
Probab=54.74 E-value=16 Score=17.40 Aligned_cols=28 Identities=18% Similarity=0.285 Sum_probs=21.9
Q ss_pred CCCCCCCEEEEEECC----------CCCCEEEEEEEEC
Q ss_conf 722658699998437----------8886469999974
Q gi|254780250|r 2 EKIRTGDRVLVLAGK----------DKGKAGQVMGVVR 29 (102)
Q Consensus 2 ~kikkGD~V~VisGk----------dKGk~G~V~~V~~ 29 (102)
.+++.||.|.|..-. =+||+|+|..+.-
T Consensus 3 ~rF~vGD~Vrvr~~~~~~HtR~P~Y~RGk~G~I~~~~g 40 (92)
T 3hht_B 3 PRFKVGERIKTKNIHPTGHTRFPRYARDKYGVIDEVYG 40 (92)
T ss_dssp CSCCTTCEEEECCCCCSSCCSCCGGGTTCEEEEEEEEE
T ss_pred CCCCCCCEEEEECCCCCCCCCCHHHHCCCEEEEEEEEC
T ss_conf 85789987788437999751254676787459998836
No 23
>>1ugp_B NitrIle hydratase beta subunit; complex, N-butyric acid, non-corrin cobalt, hydration, lyase; HET: BUA; 1.63A {Pseudonocardia thermophila} (B:134-226)
Probab=53.52 E-value=17 Score=17.29 Aligned_cols=28 Identities=29% Similarity=0.379 Sum_probs=21.7
Q ss_pred CCCCCCCEEEEEECC----------CCCCEEEEEEEEC
Q ss_conf 722658699998437----------8886469999974
Q gi|254780250|r 2 EKIRTGDRVLVLAGK----------DKGKAGQVMGVVR 29 (102)
Q Consensus 2 ~kikkGD~V~VisGk----------dKGk~G~V~~V~~ 29 (102)
.+++.||.|.|..-. =+||+|+|..+.-
T Consensus 4 prF~vGD~Vrvr~~~~~~HtRlP~Y~RGk~G~I~~~~G 41 (93)
T 1ugp_B 4 PKFKEGDVVRFSTASPKGHARRARYVRGKTGTVVKHHG 41 (93)
T ss_dssp CSCCTTCEEEECCCCCSSCCCCCGGGTTCEEEEEEEEE
T ss_pred CCCCCCCEEEECCCCCCCCEECCHHHCCCEEEEEEEEC
T ss_conf 83579998898158999822176666687558999842
No 24
>>2zkr_q 60S ribosomal protein L21; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} (q:)
Probab=53.20 E-value=7.7 Score=19.09 Aligned_cols=54 Identities=22% Similarity=0.364 Sum_probs=36.3
Q ss_pred CCCCCCCCEEEEEECC----------CCCCEEEEEEEECCCCEEEE----------ECEEEEEEEECCCCCCCC
Q ss_conf 9722658699998437----------88864699999746998999----------060597432057776565
Q gi|254780250|r 1 MEKIRTGDRVLVLAGK----------DKGKAGQVMGVVRKSGRAFV----------QGVNIVKRHQRQTPNKEA 54 (102)
Q Consensus 1 M~kikkGD~V~VisGk----------dKGk~G~V~~V~~k~~~ViV----------eGiN~~kkh~k~~~~~~g 54 (102)
|.-++.||.|-|..-. +-|++|.|..+.+..--|+| .-+|+.--|++++...+.
T Consensus 31 l~~yk~GD~VdIk~~~svqKGMPhk~yhGkTG~V~nv~~~A~gV~Vnk~v~~r~l~Kri~vr~eHik~sk~r~~ 104 (160)
T 2zkr_q 31 MRIYKKGDIVDIKGMGTVQKGMPHKCYHGKTGRVYNVTQHAVGIIVNKQVKGKILAKRINVRIEHIKHSKSRDS 104 (160)
T ss_dssp HCCCCTTCEEEECCCTTCCSSCCCGGGTTCEEEECCCCSSSEEEEEEECCSSCCSCEEEEECGGGEEEC-----
T ss_pred HHHCCCCCEEEEEECCCEEECCCCCEECCCCEEEEEECCCEEEEEEEEEECCCCCCEEEEECHHHCCCCCCHHH
T ss_conf 64314898899973695550677533425304677123850799999840786233267851111357654589
No 25
>>1vhk_A Hypothetical protein YQEU; structural genomics, unknown function; 2.60A {Bacillus subtilis} (A:1-77)
Probab=51.24 E-value=18 Score=17.08 Aligned_cols=33 Identities=9% Similarity=0.199 Sum_probs=26.5
Q ss_pred CCCCCCCEEEEEECCCCCCEEEEEEEECCCCEE
Q ss_conf 722658699998437888646999997469989
Q gi|254780250|r 2 EKIRTGDRVLVLAGKDKGKAGQVMGVVRKSGRA 34 (102)
Q Consensus 2 ~kikkGD~V~VisGkdKGk~G~V~~V~~k~~~V 34 (102)
++++.||.|.+.-|...--.++|..+.++.-.+
T Consensus 35 lR~~~Gd~i~l~dg~g~~~~a~I~~i~~~~~~~ 67 (77)
T 1vhk_A 35 XRXNEGDQIICCSQDGFEAKCELQSVSKDKVSC 67 (77)
T ss_dssp TCCCTTCEEEEECTTSCEEEEEEEEECSSEEEE
T ss_pred CCCCCCCEEEEEECCCCEEEEEEEEEECCCCCH
T ss_conf 768999999999389988999999961566302
No 26
>>1z85_A Hypothetical protein TM1380; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI; 2.12A {Thermotoga maritima MSB8} (A:1-82)
Probab=49.60 E-value=19 Score=16.94 Aligned_cols=35 Identities=14% Similarity=0.229 Sum_probs=29.4
Q ss_pred CCCCCCCEEEEEECCCCCCEEEEEEEECCCCEEEE
Q ss_conf 72265869999843788864699999746998999
Q gi|254780250|r 2 EKIRTGDRVLVLAGKDKGKAGQVMGVVRKSGRAFV 36 (102)
Q Consensus 2 ~kikkGD~V~VisGkdKGk~G~V~~V~~k~~~ViV 36 (102)
++++.||.+.+..|...=-.++|..+.++.-.+-+
T Consensus 39 LRlk~Gd~i~l~dg~g~~~~a~I~~i~~~~~~~~i 73 (82)
T 1z85_A 39 VRLKEGDVIEATDGNGFSYTCILKSLKKKTAAAKI 73 (82)
T ss_dssp TTCCTTCEEEEECSBSEEEEEEEEEECSSCEEEEE
T ss_pred CCCCCCCEEEEEECCCCEEEEEEEEECCCCCCCCH
T ss_conf 65899999999989898999998651156532121
No 27
>>3jyw_Q 60S ribosomal protein L21(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_Q (Q:)
Probab=48.58 E-value=3.9 Score=20.71 Aligned_cols=53 Identities=23% Similarity=0.349 Sum_probs=37.2
Q ss_pred CCCCCCCCEEEEEECC----------CCCCEEEEEEEECCCCEEEE----------ECEEEEEEEECCCCCCC
Q ss_conf 9722658699998437----------88864699999746998999----------06059743205777656
Q gi|254780250|r 1 MEKIRTGDRVLVLAGK----------DKGKAGQVMGVVRKSGRAFV----------QGVNIVKRHQRQTPNKE 53 (102)
Q Consensus 1 M~kikkGD~V~VisGk----------dKGk~G~V~~V~~k~~~ViV----------eGiN~~kkh~k~~~~~~ 53 (102)
|.-++.||.|-+..-. +-|++|.|..+.+..-.|.| .-+|..--|++++...+
T Consensus 30 l~~yk~GD~VdIk~d~svqkGmPhk~yhGkTG~V~~v~~~A~gV~v~k~vk~r~~~Kri~Vr~EHik~sk~~~ 102 (116)
T 3jyw_Q 30 LKVYKVGDIVDIKANGSIQKGMPHKFYQGKTGVVYNVTKSSVGVIINKMVGNRYLEKRLNLRVEHIKHSKAAA 102 (116)
T ss_dssp TCCCCTTCBCCBCCCSSSCTTCCCSTTSSCCCBCCCCCSSSSSEEEECCCSSSSCCCEEEECGGGBCCCCCSG
T ss_pred HHHCCCCCEEEEEECCCEECCCCCCEECCCCEEEEEECCCEEEEEEEEEECCEECCEEEEEEHHHEECCCCCC
T ss_conf 4222599999997459745699843354776128866683799999998899672579998225511334333
No 28
>>2qdy_B NitrIle hydratase subunit beta; post translation, lyase; 1.30A {Rhodococcus erythropolis} (B:114-212)
Probab=39.92 E-value=28 Score=16.08 Aligned_cols=28 Identities=21% Similarity=0.316 Sum_probs=21.0
Q ss_pred CCCCCCCEEEEEECC----------CCCCEEEEEEEEC
Q ss_conf 722658699998437----------8886469999974
Q gi|254780250|r 2 EKIRTGDRVLVLAGK----------DKGKAGQVMGVVR 29 (102)
Q Consensus 2 ~kikkGD~V~VisGk----------dKGk~G~V~~V~~ 29 (102)
.+++.||.|.|..-. =+||+|+|...+.
T Consensus 8 ~rF~vGD~Vrvr~~~~~~HtRlP~YvRGk~G~I~~~~~ 45 (99)
T 2qdy_B 8 TTFEVGQRVRVRDEYVPGHIRMPAYCRGRVGTISHRTT 45 (99)
T ss_dssp CCCCTTCEEEECCCCCSSCCSCCGGGTTCEEEEEEECS
T ss_pred CCCCCCCEEEECCCCCCCCEECCHHHCCCEEEEEEECC
T ss_conf 86799998997648999842276566687579986336
No 29
>>2id0_A Exoribonuclease 2; RNAse, exonuclease, hydrolyase, mRNA decay, RNR family, hydrolase; 2.35A {Escherichia coli K12} (A:20-83)
Probab=39.68 E-value=28 Score=16.06 Aligned_cols=29 Identities=17% Similarity=0.431 Sum_probs=19.7
Q ss_pred CCCCCCCEEEEE-ECCCCCCEEEEEEEECC
Q ss_conf 722658699998-43788864699999746
Q gi|254780250|r 2 EKIRTGDRVLVL-AGKDKGKAGQVMGVVRK 30 (102)
Q Consensus 2 ~kikkGD~V~Vi-sGkdKGk~G~V~~V~~k 30 (102)
+.-.-||.|.|. .-..+..+|+|.+|+..
T Consensus 33 ~~A~~GD~V~v~i~~~~~~~eG~V~~Iler 62 (64)
T 2id0_A 33 KKVXHGDRIIAVIHSEKERESAEPEELVEP 62 (64)
T ss_dssp TTSCTTCEEEEEEECCSSSCEEEEEEEEEC
T ss_pred CCCCCCCEEEEEEECCCCCCCEEEEEEEEE
T ss_conf 048899999999965799860799999997
No 30
>>2p17_A Pirin-like protein; GK1651, structural genomics, southeast collaboratory for structural genomics, protein structure initiative; 1.52A {Geobacillus kaustophilus HTA426} (A:1-14,A:136-277)
Probab=36.88 E-value=20 Score=16.87 Aligned_cols=92 Identities=13% Similarity=0.201 Sum_probs=52.0
Q ss_pred CCCEEEEEECCCCCCEEEEEEEECCCCEEEEECEEEEE--EEECC-CCCCCCEEEEEE---------ECCCHHHEEEECC
Q ss_conf 58699998437888646999997469989990605974--32057-776565179997---------0468665788978
Q gi|254780250|r 6 TGDRVLVLAGKDKGKAGQVMGVVRKSGRAFVQGVNIVK--RHQRQ-TPNKEAGIISKE---------ASIHLSNLSLIDK 73 (102)
Q Consensus 6 kGD~V~VisGkdKGk~G~V~~V~~k~~~ViVeGiN~~k--kh~k~-~~~~~gGii~~E---------~pIh~SNV~lvd~ 73 (102)
-|=+|.||+|...|.+|-+.... -+..-.+.+.. ...-+ .+..+..+.-.+ .|++.-+.+++++
T Consensus 22 dg~~vrVIaG~~~g~~sPv~~~t----p~~~~di~l~~g~~~t~~~~~~~~~~iyv~~G~~~i~g~~~~i~~~~~~~l~~ 97 (156)
T 2p17_A 22 EGATIRVFSGSSKGVKAPTKNIV----PVTXVEXIVEPGTTVVQDLPGHYNGFLYILEGSGVFGADNIEGKAGQALFFSR 97 (156)
T ss_dssp TTEEEEEEESEETTEECCCCCSS----CEEEEEEEECTTCEEEEEEETTCEEEEEEEESEEEETTTTEEEETTEEEEECC
T ss_pred CCCEEECCCCCCCCCCEEEECCC----CHHHHHHHHCCCCEEEEECCCCCEEEEEEEEEEEEECCCCCCCCCEEEEEEEC
T ss_conf 54112023477667401220479----60665532078856987559997499999751489877411255325788613
Q ss_pred CCCEEEEEEEEECCEEEEEECCCCCEEC
Q ss_conf 9962288999999979999815687715
Q gi|254780250|r 74 DGKQVRVGFSFVDGKKIRIAKRSGEPID 101 (102)
Q Consensus 74 ~~k~trv~~~~~dG~kvRv~kksg~~id 101 (102)
.+.+..+.+.....+..|+.--+|+.|+
T Consensus 98 ~~~~~~v~i~~~~~~~a~~ll~~G~Pl~ 125 (156)
T 2p17_A 98 HNRGEETELNVTAREKLRLLLYAGEPVN 125 (156)
T ss_dssp CCTTCEEEEEEEESSSEEEEEEEECCCC
T ss_pred CCCCCCEEEEEECCCCCEEEEEECCCCC
T ss_conf 6667614999816889699999898589
No 31
>>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomics, JCSG, PSI, protein structure initiative; 1.65A {Thermotoga maritima} (A:1-80)
Probab=33.74 E-value=26 Score=16.21 Aligned_cols=18 Identities=28% Similarity=0.575 Sum_probs=14.3
Q ss_pred CCCCCCCCEEEEEECCCC
Q ss_conf 972265869999843788
Q gi|254780250|r 1 MEKIRTGDRVLVLAGKDK 18 (102)
Q Consensus 1 M~kikkGD~V~VisGkdK 18 (102)
|+.|+-||.|.+..++++
T Consensus 17 ~~~i~eGD~Vil~~~~~~ 34 (80)
T 1o54_A 17 ADTLKPGDRVLLSFEDES 34 (80)
T ss_dssp GGCCCTTCEEEEEETTSC
T ss_pred CCCCCCCCEEEEEECCCC
T ss_conf 143799998999979997
No 32
>>3gqh_A Preneck appendage protein; beta barrel, viral protein; 1.80A {Bacillus phage PHI29} PDB: 3gqk_A* (A:1-109)
Probab=27.79 E-value=19 Score=16.93 Aligned_cols=28 Identities=25% Similarity=0.458 Sum_probs=20.0
Q ss_pred CCCCEEEEEEEE-ECCEEEEEECCCCCEE
Q ss_conf 899622889999-9997999981568771
Q gi|254780250|r 73 KDGKQVRVGFSF-VDGKKIRIAKRSGEPI 100 (102)
Q Consensus 73 ~~~k~trv~~~~-~dG~kvRv~kksg~~i 100 (102)
.++.|.++|+-+ .+|.|+|.|......|
T Consensus 9 ~dg~pi~~G~~VTl~g~KIR~A~~~D~il 37 (109)
T 3gqh_A 9 LGGQVIETGYLVTLEKGKIRKAEKGEKII 37 (109)
T ss_dssp TTSSCCCTTCEEEEETTEEEECCTTCCCC
T ss_pred CCCCCCCCCEEEEEECCEEEECCCCCEEE
T ss_conf 68997656469996099887368898289
No 33
>>1vq8_Q 50S ribosomal protein L21E; ribosome 50S, protein-protein complex, RNA-RNA complex, protein-RNA complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} (Q:)
Probab=24.07 E-value=52 Score=14.56 Aligned_cols=31 Identities=23% Similarity=0.385 Sum_probs=22.8
Q ss_pred CCCCCCCCEEEEEECC----------CCCCEEEEEEEECCC
Q ss_conf 9722658699998437----------888646999997469
Q gi|254780250|r 1 MEKIRTGDRVLVLAGK----------DKGKAGQVMGVVRKS 31 (102)
Q Consensus 1 M~kikkGD~V~VisGk----------dKGk~G~V~~V~~k~ 31 (102)
|.-++.||.|-+..-. +-|++|+|..+-...
T Consensus 31 l~~fk~GD~VdI~~d~sv~kGmPhk~yhGkTG~V~~~~~~a 71 (96)
T 1vq8_Q 31 VEEFDDGEKVHLKIDPSVPNGRFHPRFDGQTGTVEGKQGDA 71 (96)
T ss_dssp HCCCCTTCEEEECCCTTCCSSCCCGGGTTCEEEEEEEETTE
T ss_pred EEECCCCCEEEEEECCCCCCCCEEEEECCCCEEEEEECCEE
T ss_conf 26603898999984698021740345426635799637749
No 34
>>1nlq_A Nucleoplasmin-like protein; DNLP, chaperone, histone binding, X-RAY crystallography, ligand binding; 1.50A {Drosophila melanogaster} (A:)
Probab=22.45 E-value=47 Score=14.81 Aligned_cols=38 Identities=16% Similarity=0.095 Sum_probs=25.0
Q ss_pred EECCCHHHEEEECC-C-CCEEEEEEEEE-CCEEEEEECCCC
Q ss_conf 70468665788978-9-96228899999-997999981568
Q gi|254780250|r 60 EASIHLSNLSLIDK-D-GKQVRVGFSFV-DGKKIRIAKRSG 97 (102)
Q Consensus 60 E~pIh~SNV~lvd~-~-~k~trv~~~~~-dG~kvRv~kksg 97 (102)
|.-+|+||++|-.. . +....|..... +++++-+|--..
T Consensus 29 ~~~lhit~a~L~~~~k~~~~~~V~v~~~~~~~~~~I~tL~~ 69 (108)
T 1nlq_A 29 GQKLVIKQILLGAEAKENEFNVVEVNTPKDSVQIPIAVLKA 69 (108)
T ss_dssp CCEEEEEEEEECTTSCBTCEEEEEEEEGGGTEEEEEEEEEB
T ss_pred CCEEEEEEEECCCCCCCCCCEEEEEEEEECCEEEEEEEECC
T ss_conf 44899998884898777985899999940898899999668
No 35
>>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, PSI, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} (A:1-67)
Probab=20.42 E-value=63 Score=14.14 Aligned_cols=18 Identities=22% Similarity=0.385 Sum_probs=13.7
Q ss_pred CCCCCCCCEEEEEECCCC
Q ss_conf 972265869999843788
Q gi|254780250|r 1 MEKIRTGDRVLVLAGKDK 18 (102)
Q Consensus 1 M~kikkGD~V~VisGkdK 18 (102)
+..|+-||.|.+..++++
T Consensus 4 ~~~i~eGD~Vil~~~~~~ 21 (67)
T 1i9g_A 4 TGPFSIGERVQLTDAKGR 21 (67)
T ss_dssp CCSCCTTCEEEEEETTCC
T ss_pred CCCCCCCCEEEEEECCCC
T ss_conf 888899988999978995
Done!