HHsearch results for GI: 254780250 and protein with PDBid: 1vq8_T

>1vq8_T 50S ribosomal protein L24P; ribosome 50S, protein-protein complex, RNA-RNA complex, protein-RNA complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.1 PDB: 1vq4_T* 1vq5_T* 1vq6_T* 1vq7_T* 1s72_T* 1vq9_T* 1vqk_T* 1vql_T* 1vqm_T* 1vqn_T* 1vqo_T* 1vqp_T* 1yhq_T* 1yi2_T* 1yij_T* 1yit_T* 1yj9_T* 1yjn_T* 1yjw_T* 2otj_T* ...
Probab=99.90  E-value=2.3e-24  Score=151.45  Aligned_cols=72  Identities=25%  Similarity=0.329  Sum_probs=66.3

Q ss_pred             CCCCCCCEEEEEECCCCCCEEEEEEEECCCCEEEEECEEEEEEEECCCCCCCCEEEEEEECCCHHHEEEECCC-CCEEEE
Q ss_conf             7226586999984378886469999974699899906059743205777656517999704686657889789-962288
Q gi|254780250|r    2 EKIRTGDRVLVLAGKDKGKAGQVMGVVRKSGRAFVQGVNIVKRHQRQTPNKEAGIISKEASIHLSNLSLIDKD-GKQVRV   80 (102)
Q Consensus         2 ~kikkGD~V~VisGkdKGk~G~V~~V~~k~~~ViVeGiN~~kkh~k~~~~~~gGii~~E~pIh~SNV~lvd~~-~k~trv   80 (102)
                      ++|++||+|+||+|+|+|++|+|++|+++.++|+|||+|+.++|.+          +.|+|||+|||||+||. ++++|+
T Consensus        41 ~~IkkGD~V~Vi~Gk~KGk~GkV~~V~~k~~rV~Vegvn~~k~~~k----------~~~~pIh~SNV~i~~~~~~~~~R~  110 (120)
T 1vq8_T           41 VRVNAGDTVEVLRGDFAGEEGEVINVDLDKAVIHVEDVTLEKTDGE----------EVPRPLDTSNVRVTDLDLEDEKRE  110 (120)
T ss_dssp             EECCTTCEEEECSSTTTTCEEEEEEEETTTTEEEETTCEEECSSSC----------EEECCBCGGGEEEEECCCCCHHHH
T ss_pred             CCEECCCEEEEEECCCCCCCCEEEEEECCCCEEEEECCEEEECCCC----------EEECCCCHHHEEEEECCCCCCHHH
T ss_conf             3150799999956676997532999986799999948289955897----------786434648889984767870476


Q ss_pred             EEE
Q ss_conf             999
Q gi|254780250|r   81 GFS   83 (102)
Q Consensus        81 ~~~   83 (102)
                      ++.
T Consensus       111 ~~l  113 (120)
T 1vq8_T          111 ARL  113 (120)
T ss_dssp             HHH
T ss_pred             HHH
T ss_conf             676