RPS-BLAST 2.2.22 [Sep-27-2009]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= gi|254780250|ref|YP_003064663.1| 50S ribosomal protein L24
[Candidatus Liberibacter asiaticus str. psy62]
(102 letters)
>d2gycs1 b.34.5.1 (S:3-101) Ribosomal proteins L24 (L24p)
{Escherichia coli [TaxId: 562]}
Length = 99
Score = 95.1 bits (237), Expect = 1e-21
Identities = 48/99 (48%), Positives = 67/99 (67%), Gaps = 4/99 (4%)
Query: 3 KIRTGDRVLVLAGKDKGKAGQVMGVVRKSGRAFVQGVNIVKRHQRQTP--NKEAGIISKE 60
KIR D V+VL GKDKGK G+V V+ G+ V+G+N+VK+HQ+ P N+ GI+ KE
Sbjct: 1 KIRRDDEVIVLTGKDKGKRGKVKNVLSS-GKVIVEGINLVKKHQKPVPALNQPGGIVEKE 59
Query: 61 ASIHLSNLSLID-KDGKQVRVGFSFVDGKKIRIAKRSGE 98
A+I +SN+++ + GK RVGF F DGKK+R K + E
Sbjct: 60 AAIQVSNVAIFNAATGKADRVGFRFEDGKKVRFFKSNSE 98
>d2zjrr1 b.34.5.1 (R:4-113) Ribosomal proteins L24 (L24p)
{Deinococcus radiodurans [TaxId: 1299]}
Length = 110
Score = 92.9 bits (231), Expect = 7e-21
Identities = 35/98 (35%), Positives = 62/98 (63%), Gaps = 2/98 (2%)
Query: 3 KIRTGDRVLVLAGKDKGKAGQVMGVVRKSGRAFVQGVNIVKRHQRQTP-NKEAGIISKEA 61
+ GD V+VL+GK KG+ G+V+ + + + V+GVN++ ++ + + N + G +E
Sbjct: 12 HFKKGDTVIVLSGKHKGQTGKVLLALPRDQKVVVEGVNVITKNVKPSMTNPQGGQEQREL 71
Query: 62 SIHLSNLSLID-KDGKQVRVGFSFVDGKKIRIAKRSGE 98
++H S ++L+D + GK RV VDGKK+R+A SG+
Sbjct: 72 ALHASKVALVDPETGKATRVRKQIVDGKKVRVAVASGK 109
>d2j01y1 b.34.5.1 (Y:2-102) Ribosomal proteins L24 (L24p) {Thermus
thermophilus [TaxId: 274]}
Length = 101
Score = 87.5 bits (217), Expect = 3e-19
Identities = 40/96 (41%), Positives = 56/96 (58%), Gaps = 3/96 (3%)
Query: 3 KIRTGDRVLVLAGKDKGKAGQVMGVVRKSGRAFVQGVNIVKRHQRQTPN-KEAGIISKEA 61
++ GD VLV +GK KG+ G+V V+ K V+GVNIVK+ R +P + G I KEA
Sbjct: 5 HVKKGDTVLVASGKYKGRVGKVKEVLPKKYAVIVEGVNIVKKAVRVSPKYPQGGFIEKEA 64
Query: 62 SIHLSNLSLID-KDGKQVRVGFSFV-DGKKIRIAKR 95
+H S + I GK RV F+ +GKKIR+ +
Sbjct: 65 PLHASKVRPICPACGKPTRVRKKFLENGKKIRVCAK 100
>d1vqot1 b.34.5.1 (T:1-119) Ribosomal proteins L24 (L24p) {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 119
Score = 63.6 bits (155), Expect = 5e-12
Identities = 17/81 (20%), Positives = 29/81 (35%), Gaps = 11/81 (13%)
Query: 3 KIRTGDRVLVLAGKDKGKAGQVMGVVRKSGRAFVQGVNIVKRHQRQTPNKEAGIISKEAS 62
++ GD V VL G G+ G+V+ V V+ V + K +
Sbjct: 41 RVNAGDTVEVLRGDFAGEEGEVINVDLDKAVIHVEDVTLEKTDGEE----------VPRP 90
Query: 63 IHLSNLSLID-KDGKQVRVGF 82
+ SN+ + D + R
Sbjct: 91 LDTSNVRVTDLDLEDEKREAR 111
>d1b34a_ b.38.1.1 (A:) D1 core SNRNP protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 80
Score = 27.0 bits (60), Expect = 0.48
Identities = 7/30 (23%), Positives = 15/30 (50%)
Query: 62 SIHLSNLSLIDKDGKQVRVGFSFVDGKKIR 91
+ HL + + K+ + V++ + G IR
Sbjct: 36 NTHLKAVKMTLKNREPVQLETLSIRGNNIR 65
>g1qd6.1 f.4.2.1 (A:,C:) Outer membrane phospholipase A (OMPLA)
{Escherichia coli [TaxId: 562]}
Length = 253
Score = 25.5 bits (56), Expect = 1.2
Identities = 9/20 (45%), Positives = 10/20 (50%), Gaps = 2/20 (10%)
Query: 69 SLIDKDGKQ--VRVGFSFVD 86
SLID + Q V VG D
Sbjct: 232 SLIDYNFNQTRVGVGVMLND 251
>d1d3ba_ b.38.1.1 (A:) D3 core SNRNP protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 72
Score = 24.4 bits (53), Expect = 2.7
Identities = 8/30 (26%), Positives = 19/30 (63%)
Query: 62 SIHLSNLSLIDKDGKQVRVGFSFVDGKKIR 91
+ +SN+++ +DG+ ++ ++ G KIR
Sbjct: 37 NCQMSNITVTYRDGRVAQLEQVYIRGCKIR 66
>d2joya1 b.34.5.7 (A:1-96) Ribosomal protein L14e {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 96
Score = 23.9 bits (52), Expect = 3.7
Identities = 10/49 (20%), Positives = 20/49 (40%), Gaps = 4/49 (8%)
Query: 1 MEKIRTGDRVLVLAGKDKGKAGQVMGVVRKSGRAFVQG---VNIVKRHQ 46
M I G + + G++ G ++ ++ V G + VKR +
Sbjct: 1 MPAIEVGRICVKVKGREAGSKCVIVDII-DDNFVLVTGPKDITGVKRRR 48
>d1f9ka_ b.29.1.1 (A:) Legume lectin {Winged bean (Psophocarpus
tetragonolobus), acidic lectin [TaxId: 3891]}
Length = 234
Score = 23.9 bits (51), Expect = 4.2
Identities = 5/17 (29%), Positives = 8/17 (47%)
Query: 67 NLSLIDKDGKQVRVGFS 83
+L + + V VG S
Sbjct: 194 DLKQEFPNSEWVNVGLS 210
>d2do3a1 b.34.5.5 (A:462-523) Transcription elongation factor SPT5
{Human (Homo sapiens) [TaxId: 9606]}
Length = 62
Score = 23.8 bits (52), Expect = 4.2
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 4 IRTGDRVLVLAGKDKGKAGQVMGV 27
+ GD V V+AG+ +G G ++ V
Sbjct: 11 FKMGDHVKVIAGRFEGDTGLIVRV 34
>d1xzoa1 c.47.1.10 (A:3-174) Thioredoxin-like protein Sco1 (YpmQ),
soluble domain {Bacillus subtilis [TaxId: 1423]}
Length = 172
Score = 23.8 bits (50), Expect = 4.4
Identities = 9/30 (30%), Positives = 13/30 (43%), Gaps = 2/30 (6%)
Query: 63 IHLSNLSLIDKDGKQVRV--GFSFVDGKKI 90
IH S+ L+ DGK ++ G I
Sbjct: 132 IHQSSFYLVGPDGKVLKDYNGVENTPYDDI 161
>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 640
Score = 23.7 bits (50), Expect = 4.5
Identities = 9/15 (60%), Positives = 11/15 (73%)
Query: 40 NIVKRHQRQTPNKEA 54
N V RH +TPNK+A
Sbjct: 63 NCVDRHALKTPNKKA 77
>d1xdna_ d.142.2.4 (A:) RNA editing ligase MP52 {Trypanosoma
brucei [TaxId: 5691]}
Length = 265
Score = 23.0 bits (49), Expect = 8.0
Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 9/35 (25%)
Query: 63 IHLSNLSLIDKDGKQVRVGFSFVDGKKIRIAKRSG 97
+H +N + + D + +R AKRSG
Sbjct: 37 VHGTNFGIYLINQG---------DHEVVRFAKRSG 62
>d1qwya_ b.84.3.2 (A:) Peptidoglycan hydrolase LytM {Staphylococcus
aureus [TaxId: 1280]}
Length = 270
Score = 22.7 bits (48), Expect = 8.7
Identities = 7/32 (21%), Positives = 12/32 (37%), Gaps = 9/32 (28%)
Query: 3 KIRTGDRVLVLAGKDKGKAGQVMGVVRKSGRA 34
+ GD+V KAG + +G +
Sbjct: 221 TVSAGDKV---------KAGDQIAYSGSTGNS 243
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.137 0.373
Gapped
Lambda K H
0.267 0.0654 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 363,612
Number of extensions: 15075
Number of successful extensions: 75
Number of sequences better than 10.0: 1
Number of HSP's gapped: 65
Number of HSP's successfully gapped: 24
Length of query: 102
Length of database: 2,407,596
Length adjustment: 63
Effective length of query: 39
Effective length of database: 1,542,606
Effective search space: 60161634
Effective search space used: 60161634
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.0 bits)