BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780250|ref|YP_003064663.1| 50S ribosomal protein L24
[Candidatus Liberibacter asiaticus str. psy62]
         (102 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780250|ref|YP_003064663.1| 50S ribosomal protein L24 [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 102

 Score =  200 bits (508), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 102/102 (100%), Positives = 102/102 (100%)

Query: 1   MEKIRTGDRVLVLAGKDKGKAGQVMGVVRKSGRAFVQGVNIVKRHQRQTPNKEAGIISKE 60
           MEKIRTGDRVLVLAGKDKGKAGQVMGVVRKSGRAFVQGVNIVKRHQRQTPNKEAGIISKE
Sbjct: 1   MEKIRTGDRVLVLAGKDKGKAGQVMGVVRKSGRAFVQGVNIVKRHQRQTPNKEAGIISKE 60

Query: 61  ASIHLSNLSLIDKDGKQVRVGFSFVDGKKIRIAKRSGEPIDG 102
           ASIHLSNLSLIDKDGKQVRVGFSFVDGKKIRIAKRSGEPIDG
Sbjct: 61  ASIHLSNLSLIDKDGKQVRVGFSFVDGKKIRIAKRSGEPIDG 102


>gi|254780932|ref|YP_003065345.1| hypothetical protein CLIBASIA_04155 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 236

 Score = 21.6 bits (44), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 13/61 (21%), Positives = 27/61 (44%), Gaps = 7/61 (11%)

Query: 27 VVRKSGRAFVQGVNIVKRHQRQTPNKEAGIISKEASIH---LSNLSLIDKDGKQVRVGFS 83
          ++  + + F    N+    Q Q P ++ G+I KE  +    +SN    D++    + G  
Sbjct: 22 ILENNDQEFSTSNNV----QTQVPARDEGVIEKEDFVQEDKMSNHLFADQNSHLKKYGVE 77

Query: 84 F 84
          +
Sbjct: 78 Y 78


>gi|254781114|ref|YP_003065527.1| glycosyl transferase family protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 263

 Score = 21.2 bits (43), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 9/20 (45%), Positives = 12/20 (60%)

Query: 49  TPNKEAGIISKEASIHLSNL 68
           +P      I KEA+IHL N+
Sbjct: 149 SPRTTGYFIGKEAAIHLLNV 168


>gi|254780641|ref|YP_003065054.1| hypothetical protein CLIBASIA_02640 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 121

 Score = 20.8 bits (42), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 8/22 (36%), Positives = 13/22 (59%)

Query: 77 QVRVGFSFVDGKKIRIAKRSGE 98
          Q+     F+DG+K  IA++  E
Sbjct: 2  QISAKIEFLDGQKYTIARQMHE 23


>gi|254780801|ref|YP_003065214.1| hypothetical protein CLIBASIA_03460 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 222

 Score = 20.8 bits (42), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 9/16 (56%), Positives = 11/16 (68%)

Query: 85  VDGKKIRIAKRSGEPI 100
           VD KKIR+A   G+ I
Sbjct: 37  VDSKKIRVALSCGQVI 52


>gi|254780424|ref|YP_003064837.1| transcriptional regulator protein [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 144

 Score = 20.0 bits (40), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 7/29 (24%), Positives = 17/29 (58%)

Query: 12 VLAGKDKGKAGQVMGVVRKSGRAFVQGVN 40
          ++ G  + K G+ +G+  +  + + +GVN
Sbjct: 24 MILGMSQEKLGECLGITFQQVQKYEKGVN 52


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.317    0.137    0.373 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,743
Number of Sequences: 1233
Number of extensions: 2333
Number of successful extensions: 9
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of query: 102
length of database: 328,796
effective HSP length: 62
effective length of query: 40
effective length of database: 252,350
effective search space: 10094000
effective search space used: 10094000
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.2 bits)
S2: 32 (16.9 bits)