Query gi|254780251|ref|YP_003064664.1| 50S ribosomal protein L14 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 122
No_of_seqs 112 out of 994
Neff 5.2
Searched_HMMs 33803
Date Tue May 24 04:03:08 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780251.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >1whi_A Ribosomal protein L14; 100.0 0 0 317.3 11.6 122 1-122 1-122 (122)
2 >3bbo_M Ribosomal protein L14; 100.0 0 0 317.9 10.8 121 1-122 1-121 (121)
3 >2j01_O 50S ribosomal protein 100.0 4.5E-41 1.4E-45 257.6 12.9 99 1-99 1-99 (99)
4 >3i1n_K 50S ribosomal protein 100.0 1E-39 3.1E-44 249.7 9.8 98 1-98 1-99 (99)
5 >2zkr_k 60S ribosomal protein 100.0 3.9E-35 1.2E-39 223.3 11.5 92 1-95 19-114 (114)
6 >1vq8_K 50S ribosomal protein 100.0 2.8E-34 8.2E-39 218.4 12.4 92 1-95 11-106 (106)
7 >1pyb_A Methionyl-tRNA synthet 41.8 6.9 0.0002 19.5 0.2 86 4-98 19-110 (111)
8 >3icy_A Sensor protein; sensor 40.3 27 0.00079 16.1 3.5 31 66-96 39-69 (77)
9 >2hvy_B GAR1, small nucleolar 27.8 37 0.0011 15.2 2.1 20 85-104 36-57 (104)
10 >1mkh_A Metrs;, C-terminal dom 27.1 16 0.00049 17.3 0.2 92 2-99 13-107 (107)
11 >3lhn_A Lipoprotein; structura 25.4 44 0.0013 14.8 2.1 32 64-95 81-112 (126)
12 >1rqg_A Methionyl-tRNA synthet 23.4 20 0.00058 16.8 0.0 91 3-99 95-188 (188)
13 >3bwz_A Cellulosomal scaffoldi 21.5 58 0.0017 14.1 2.4 63 30-112 13-75 (181)
14 >3kcp_B Cellulosome anchoring 21.0 59 0.0017 14.1 3.1 16 30-45 27-42 (187)
15 >2bm3_A Type 2 cohesin, scaffo 20.0 62 0.0018 14.0 2.4 16 30-45 15-30 (166)
No 1
>>1whi_A Ribosomal protein L14; rRNA-binding; 1.50A {Geobacillus stearothermophilus} (A:)
Probab=100.00 E-value=0 Score=317.34 Aligned_cols=122 Identities=56% Similarity=0.849 Sum_probs=120.8
Q ss_pred CCCCCCEEEEEECCCCEEEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCEEEEEEEEECCCEECCCCCEEEEC
Q ss_conf 96778689999678942999999726887642573888999998205787214773789999971135176898888618
Q gi|254780251|r 1 MIQMQTSLSISDNSGARLVKCIKVLGGSKRKCASIGDTVVVAVKEVIPRSKVKKGSVQKAIIVRVSYGIRRSDGSVVRFD 80 (122)
Q Consensus 1 MIq~~t~l~v~DNSGak~v~cI~v~~~~~~~~a~vGD~I~vsVk~~~p~~k~kkg~v~~avIVrtkk~~~R~dG~~i~F~ 80 (122)
|||.+|+|+|+|||||+.++||++|+++++++|.+||+|++|||++.|+++++||++++|+|||||++++|.||++++||
T Consensus 1 MIq~~T~l~v~DNSGak~v~cI~v~~~~~~~~a~vGD~I~vsVKk~~~~~kvkkg~v~~avIVrtkk~~~r~dg~~i~F~ 80 (122)
T 1whi_A 1 MIQQESRLKVADNSGAREVLVIKVLGGSGRRYANIGDVVVATVKDATPGGVVKKGQVVKAVVVRTKRGVRRPDGSYIRFD 80 (122)
T ss_dssp CBCTTCEEEECBSSSEEEEEEEEECSSTTCCCBCTTCEEEEEEEEECTTSSSCTTCEEEEEEEECSSCEECTTSCEECCS
T ss_pred CCCCCCEEEEEECCCCCEEEEEEEECCCCCCCCCCCCEEEEEEEECCCCCCEECCCEEEEEEEEEEEEEECCCCCEEEEC
T ss_conf 97656679882789976899999979778401242759999997315787237474778999997100775898899828
Q ss_pred CEEEEEECCCCCEECCEEECCHHHHHHCCCCEEEEEECCCCC
Q ss_conf 805999989997602266331006664179808875243129
Q gi|254780251|r 81 KNAAVLIDNKKDLLASRVFGPVPRELRIKGHLKILSLAAEVV 122 (122)
Q Consensus 81 ~Na~VLin~~~~p~GtRI~Gpv~~elr~~~~~Ki~slA~~vi 122 (122)
|||+||+|++++|+||||+||+|+|||+++|+||+|||+++|
T Consensus 81 ~Na~VLin~~~~p~GTrI~Gpv~~elr~~~~~Ki~sla~~iv 122 (122)
T 1whi_A 81 ENACVIIRDDKSPRGTRIFGPVARELRDKDFMKIISLAPEVI 122 (122)
T ss_dssp SCEEEEECTTSCBSSSCBCSCBCTHHHHTTCHHHHHHCSCBC
T ss_pred CCEEEEECCCCCEEEEEEEECCHHHHHHCCCCHHHCCCCHHC
T ss_conf 827999969999902279604239986458942303530019
No 2
>>3bbo_M Ribosomal protein L14; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} (M:)
Probab=100.00 E-value=0 Score=317.94 Aligned_cols=121 Identities=45% Similarity=0.797 Sum_probs=119.5
Q ss_pred CCCCCCEEEEEECCCCEEEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCEEEEEEEEECCCEECCCCCEEEEC
Q ss_conf 96778689999678942999999726887642573888999998205787214773789999971135176898888618
Q gi|254780251|r 1 MIQMQTSLSISDNSGARLVKCIKVLGGSKRKCASIGDTVVVAVKEVIPRSKVKKGSVQKAIIVRVSYGIRRSDGSVVRFD 80 (122)
Q Consensus 1 MIq~~t~l~v~DNSGak~v~cI~v~~~~~~~~a~vGD~I~vsVk~~~p~~k~kkg~v~~avIVrtkk~~~R~dG~~i~F~ 80 (122)
|||.+|+|+|+|||||++++||++|+++++++|.+||+|++|||+++|+++++||++++|+|||||++++|+||++++||
T Consensus 1 MIq~~t~l~v~DNSGak~v~cI~v~~~~~~~~a~vGD~I~vsVkk~~p~~kvkkg~v~~avIVrtkk~~~r~dG~~i~Fd 80 (121)
T 3bbo_M 1 MIQPQTHLNVADNSGARELMCIRIIGASNRRYARIGDVIVAVIKEAIPNTPLERSEVIRAVVVRTCKELKRDNGMIIRYD 80 (121)
T ss_dssp CCCSSCEEEECSSSSEEEEEEEEECSSSCCCCCCTTCEEEEEEEEECSSSSSCSSCEEEEEEEECSSCEECTTSCEECCS
T ss_pred CCCCCCEEEEEECCCCCEEEEEEECCCCCCEECCCCCEEEEEEEEECCCCCCCCCCEEEEEEEEECCCEECCCCCEEECC
T ss_conf 96545668874789986899999769987501536839999999604688312564722578863132180899999818
Q ss_pred CEEEEEECCCCCEECCEEECCHHHHHHCCCCEEEEEECCCCC
Q ss_conf 805999989997602266331006664179808875243129
Q gi|254780251|r 81 KNAAVLIDNKKDLLASRVFGPVPRELRIKGHLKILSLAAEVV 122 (122)
Q Consensus 81 ~Na~VLin~~~~p~GtRI~Gpv~~elr~~~~~Ki~slA~~vi 122 (122)
||||||+|++++|+||||+||+++|||++ |+||+|||++++
T Consensus 81 ~Na~VLin~~~~p~GTrI~Gpv~~elr~k-~~Ki~slA~~iv 121 (121)
T 3bbo_M 81 DNAAVIIDQEGNPKGTRIFGAIARELRQK-FAKIVSLAPEVL 121 (121)
T ss_dssp SCEEEECCTTSSCSSSCCCSCCCGGGTTT-CHHHHHHSSCCC
T ss_pred CCEEEEECCCCCEEEEEEECCCCHHHHHH-CHHHHHCCHHHC
T ss_conf 85799998999991617962427999865-428874030019
No 3
>>2j01_O 50S ribosomal protein L14; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} (O:1-99)
Probab=100.00 E-value=4.5e-41 Score=257.63 Aligned_cols=99 Identities=54% Similarity=0.845 Sum_probs=98.2
Q ss_pred CCCCCCEEEEEECCCCEEEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCEEEEEEEEECCCEECCCCCEEEEC
Q ss_conf 96778689999678942999999726887642573888999998205787214773789999971135176898888618
Q gi|254780251|r 1 MIQMQTSLSISDNSGARLVKCIKVLGGSKRKCASIGDTVVVAVKEVIPRSKVKKGSVQKAIIVRVSYGIRRSDGSVVRFD 80 (122)
Q Consensus 1 MIq~~t~l~v~DNSGak~v~cI~v~~~~~~~~a~vGD~I~vsVk~~~p~~k~kkg~v~~avIVrtkk~~~R~dG~~i~F~ 80 (122)
|||.+|+|+|+|||||++++||++|+++++++|++||+|++|||+++|++++|||++++|+|||||++++|.||++++||
T Consensus 1 MIq~~t~l~v~DNSGak~v~cI~v~~~~~~~~a~iGD~I~vsVkk~~p~~~vkkg~v~~avIVrtkk~~~r~dG~~i~F~ 80 (99)
T 2j01_O 1 MIQPQTYLEVADNTGARKIMCIRVLKGSNAKYATVGDVIVASVKEAIPRGAVKEGDVVKAVVVRTKKEIKRPDGSAIRFD 80 (99)
T ss_dssp CCCTTCEEEECSSSSCCEEEEEEECSSTTCCCCCTTCEEEEEEEECCTTCSSCSSCEEEEEEEECSSCEECTTSCEEECS
T ss_pred CCCCCCEEEEEECCCCCEEEEEEEECCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCEEEEEECCCEECCCCCEEECC
T ss_conf 97667678882589864999999968888776644719999997136577214785423388860154396999999738
Q ss_pred CEEEEEECCCCCEECCEEE
Q ss_conf 8059999899976022663
Q gi|254780251|r 81 KNAAVLIDNKKDLLASRVF 99 (122)
Q Consensus 81 ~Na~VLin~~~~p~GtRI~ 99 (122)
|||+||+|++++|+|||||
T Consensus 81 ~Na~VLi~~~~~p~GTrIf 99 (99)
T 2j01_O 81 DNAAVIINNQLEPRGTRVF 99 (99)
T ss_dssp SCEEEEECTTSCCSSSCCC
T ss_pred CCEEEEECCCCCEEEEEEE
T ss_conf 9779999899999574696
No 4
>>3i1n_K 50S ribosomal protein L14; ribosome structure, protein-RNA complex, acetylation, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA- binding, methylation; 3.19A {Escherichia coli k-12} PDB: 1p85_I 1p86_I 1vs8_K 2aw4_K 2awb_K 1vs6_K 2i2v_K 2i2t_K* 2qao_K* 2qba_K* 2qbc_K* 2qbe_K 2qbg_K 2qbi_K* 2qbk_K* 2qov_K 2qox_K 2qoz_K* 2qp1_K* 2rdo_K ... (K:1-99)
Probab=100.00 E-value=1e-39 Score=249.75 Aligned_cols=98 Identities=57% Similarity=0.928 Sum_probs=96.4
Q ss_pred CCCCCCEEEEEECCCCEEEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCEEEEEEEEECCCEECCCCCEEEEC
Q ss_conf 96778689999678942999999726887642573888999998205787214773789999971135176898888618
Q gi|254780251|r 1 MIQMQTSLSISDNSGARLVKCIKVLGGSKRKCASIGDTVVVAVKEVIPRSKVKKGSVQKAIIVRVSYGIRRSDGSVVRFD 80 (122)
Q Consensus 1 MIq~~t~l~v~DNSGak~v~cI~v~~~~~~~~a~vGD~I~vsVk~~~p~~k~kkg~v~~avIVrtkk~~~R~dG~~i~F~ 80 (122)
|||.+|+|+|+|||||++++||++|+++++++|.+||+|++|||+++|+++++||++++|+|||||++++|+||++++||
T Consensus 1 MIq~~T~l~v~DNSGak~v~cI~v~~~~~~~~a~iGD~I~vsVK~~~p~~kvkkg~v~~avIVrtkk~~~r~dG~~i~F~ 80 (99)
T 3i1n_K 1 MIQEQTMLNVADNSGARRVMCIKVLGGSHRRYAGVGDIIKITIKEAIPRGKVKKGDVLKAVVVRTKKGVRRPDGSVIRFD 80 (99)
T ss_dssp CCCSEEEEEESBCSSCSCEEEEEECSSTTCCCCCTTCEEEEEESSCCSSSSCCTTCEEEEEEEECSSCCCCSSSCCEEES
T ss_pred CCCCCCEEEEEECCCCCEEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCEECCCEEEEEEEEEEEEEECCCCCEEEEC
T ss_conf 97656678873589975899999718887875764828999999736687325076015899978634874898489808
Q ss_pred CEEEEEECCCC-CEECCEE
Q ss_conf 80599998999-7602266
Q gi|254780251|r 81 KNAAVLIDNKK-DLLASRV 98 (122)
Q Consensus 81 ~Na~VLin~~~-~p~GtRI 98 (122)
|||+||+|+++ +|+||||
T Consensus 81 ~Na~VLin~k~~~P~GTrI 99 (99)
T 3i1n_K 81 GNACVLLNNNSEQPIGTRI 99 (99)
T ss_dssp SCEEEEEETTTEEESCSCB
T ss_pred CCEEEEEECCCCCCCCCEE
T ss_conf 9769998089998356779
No 5
>>2zkr_k 60S ribosomal protein L23; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} PDB: 1s1i_R (k:1-114)
Probab=100.00 E-value=3.9e-35 Score=223.28 Aligned_cols=92 Identities=30% Similarity=0.501 Sum_probs=87.5
Q ss_pred CCCCCCEEEEEECCCCEEEEEEEECCCCCC----CCCCCCCEEEEEEEECCCCCCCCCCCEEEEEEEEECCCEECCCCCE
Q ss_conf 967786899996789429999997268876----4257388899999820578721477378999997113517689888
Q gi|254780251|r 1 MIQMQTSLSISDNSGARLVKCIKVLGGSKR----KCASIGDTVVVAVKEVIPRSKVKKGSVQKAIIVRVSYGIRRSDGSV 76 (122)
Q Consensus 1 MIq~~t~l~v~DNSGak~v~cI~v~~~~~~----~~a~vGD~I~vsVk~~~p~~k~kkg~v~~avIVrtkk~~~R~dG~~ 76 (122)
|||.+|+|+|+|||||++++||++++++++ ++|.+||+|++|||++.|++ +||+++|||||||++++|+||++
T Consensus 19 mIq~~T~L~VaDNSGak~v~cI~v~~~~~~~~~~~~a~iGD~IvvsVKk~~p~~---kg~v~~AVIVrtkk~~rR~dG~~ 95 (114)
T 2zkr_k 19 GLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPEL---RKKVHPAVVIRQRKSYRRKDGVF 95 (114)
T ss_dssp CEETTCEEEECBSSSEEEEEEEEETTCCCCTTCCCEECTTCEEEEEEEEECTTT---TTCEEEEEEEECSSCEECTTSCE
T ss_pred ECCCCCEEEEECCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEEEEECCCCCC---CCCCEEEEEEEEEEEEECCCCCE
T ss_conf 434378999713877237999998676786434545635269999996057766---65636999999823588379958
Q ss_pred EEECCEEEEEECCCCCEEC
Q ss_conf 8618805999989997602
Q gi|254780251|r 77 VRFDKNAAVLIDNKKDLLA 95 (122)
Q Consensus 77 i~F~~Na~VLin~~~~p~G 95 (122)
++||||||||+|++++|+|
T Consensus 96 i~FddNavVLi~~~~~P~G 114 (114)
T 2zkr_k 96 LYFEDNAGVIVNNKGEMKG 114 (114)
T ss_dssp ECCSSCEEEEBCTTSCBSS
T ss_pred EECCCCEEEEECCCCCEEE
T ss_conf 9748965999989998714
No 6
>>1vq8_K 50S ribosomal protein L14P; ribosome 50S, protein-protein complex, RNA-RNA complex, protein-RNA complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} (K:1-106)
Probab=100.00 E-value=2.8e-34 Score=218.35 Aligned_cols=92 Identities=36% Similarity=0.548 Sum_probs=86.9
Q ss_pred CCCCCCEEEEEECCCCEEEEEEEECCCC----CCCCCCCCCEEEEEEEECCCCCCCCCCCEEEEEEEEECCCEECCCCCE
Q ss_conf 9677868999967894299999972688----764257388899999820578721477378999997113517689888
Q gi|254780251|r 1 MIQMQTSLSISDNSGARLVKCIKVLGGS----KRKCASIGDTVVVAVKEVIPRSKVKKGSVQKAIIVRVSYGIRRSDGSV 76 (122)
Q Consensus 1 MIq~~t~l~v~DNSGak~v~cI~v~~~~----~~~~a~vGD~I~vsVk~~~p~~k~kkg~v~~avIVrtkk~~~R~dG~~ 76 (122)
|||.+|+|+|+|||||++++||++++++ ++++|.+||+|++|||+++|.. ||++++|+||||+++++|+||++
T Consensus 11 mIq~~t~l~v~DNSGak~v~cI~v~~~~~~~~~~~~a~iGD~I~vsVKk~~p~~---kg~v~~AvIVrtk~~~~r~dG~~ 87 (106)
T 1vq8_K 11 GLEKGSLITCADNTGARELKVISVHGYSGTKNRLPKAGLGDKITVSVTKGTPEM---RRQVLEAVVVRQRKPIRRPDGTR 87 (106)
T ss_dssp CEETTCEEEECBSSSEEEEEEEEETTCCCCTTCCCEECTTCEEEEEEEEECTTT---TTCEEEEEEEECSSCEECTTSCE
T ss_pred CCCCCCEEEEEECCCCCEEEEEEEECCCCCCCCCCCCCCCEEEEEEEEECCCCC---CCCEEEEEEEEECCCEECCCCCE
T ss_conf 235067899822898747999998444564445776864619999997378876---65500578999757239899998
Q ss_pred EEECCEEEEEECCCCCEEC
Q ss_conf 8618805999989997602
Q gi|254780251|r 77 VRFDKNAAVLIDNKKDLLA 95 (122)
Q Consensus 77 i~F~~Na~VLin~~~~p~G 95 (122)
++|||||+||+|++++|+|
T Consensus 88 i~FddNa~VLin~~~~p~G 106 (106)
T 1vq8_K 88 VKFEDNAAVIVDENEDPRG 106 (106)
T ss_dssp EEESSCEEEEECTTSCBSS
T ss_pred EECCCCEEEEECCCCCEEE
T ss_conf 9817977999989999936
No 7
>>1pyb_A Methionyl-tRNA synthetase beta subunit; oligonucleotide, oligosaccharide-binding fold, OB-fold, beta-barrel, RNA binding protein; 2.50A {Aquifex aeolicus} (A:)
Probab=41.84 E-value=6.9 Score=19.46 Aligned_cols=86 Identities=12% Similarity=0.151 Sum_probs=43.7
Q ss_pred CCCEEEEEECCCCEEEEEEEECCCCCCCCCCCCCEEEEEEEECCCCC---CCCCCCEEEEEEEEECCCEE-CCCCCEEEE
Q ss_conf 78689999678942999999726887642573888999998205787---21477378999997113517-689888861
Q gi|254780251|r 4 MQTSLSISDNSGARLVKCIKVLGGSKRKCASIGDTVVVAVKEVIPRS---KVKKGSVQKAIIVRVSYGIR-RSDGSVVRF 79 (122)
Q Consensus 4 ~~t~l~v~DNSGak~v~cI~v~~~~~~~~a~vGD~I~vsVk~~~p~~---k~kkg~v~~avIVrtkk~~~-R~dG~~i~F 79 (122)
.+..+.|-+...+....+.++- +|+-..-.|-.+..-. .+.-..+.....+..++-.. -..||...|
T Consensus 19 vG~V~~~~~hp~adkL~v~~Vd---------~G~~~~~ivt~~~n~~~~~~l~~~~~~~~~~i~~~~~~Gv~S~GMl~s~ 89 (111)
T 1pyb_A 19 VAKVLSAERVEGSEKLLKLTLS---------LGDEERTVVAGIAKYYTPEELVGKKIVIVANLKPRKIFGIESQGMILAA 89 (111)
T ss_dssp EEEEEEEECCSSCSCCEEEEEE---------ETTEEEEEEECCTTTSCHHHHTTCEEEEETTSCSSCTTSCCBSSEECEE
T ss_pred EEEEEEEEECCCCCEEEEEEEE---------CCCCCEEEEEEECCCCCCHHHCCCEEEEEECCCCCEECCCCCCEEEEEE
T ss_conf 9999999866885200877863---------2872127998643123821205725788961476037583341799998
Q ss_pred CC--EEEEEECCCCCEECCEE
Q ss_conf 88--05999989997602266
Q gi|254780251|r 80 DK--NAAVLIDNKKDLLASRV 98 (122)
Q Consensus 80 ~~--Na~VLin~~~~p~GtRI 98 (122)
++ ...+|.=++.-|.|++|
T Consensus 90 ~elg~~~il~~~~~~~~G~~i 110 (111)
T 1pyb_A 90 SDGENLSVIVPDRDVKEGAKL 110 (111)
T ss_dssp ECSSCEEEEEESSCCCTTEEC
T ss_pred ECCCCEEEEECCCCCCCCCCC
T ss_conf 769966998589998897866
No 8
>>3icy_A Sensor protein; sensory box histidine kinase/response regulator domain, kinase, chlorobium tepidum TLS, PSI-2; 2.68A {Chlorobaculum tepidum} (A:1-14,A:56-118)
Probab=40.30 E-value=27 Score=16.06 Aligned_cols=31 Identities=10% Similarity=0.163 Sum_probs=26.6
Q ss_pred CCCEECCCCCEEEECCEEEEEECCCCCEECC
Q ss_conf 1351768988886188059999899976022
Q gi|254780251|r 66 SYGIRRSDGSVVRFDKNAAVLIDNKKDLLAS 96 (122)
Q Consensus 66 kk~~~R~dG~~i~F~~Na~VLin~~~~p~Gt 96 (122)
-+-+.++||.+.-+..++..+.|++|++++-
T Consensus 39 E~Ri~~kdG~~~Wv~~~~~pi~d~~G~i~~~ 69 (77)
T 3icy_A 39 VYRIVTPEGKLHWIEDHXRSSFSDDGLFSGI 69 (77)
T ss_dssp EEEEECTTCCEEEEEEEEEEEECTTSCEEEE
T ss_pred CEEEECCCCCEEEEEEEEEEEECCCCCEEEE
T ss_conf 0157825997999999999999999799999
No 9
>>2hvy_B GAR1, small nucleolar RNP similar to GAR1; H/ACA RNA, RNP, pseudouridine synthase, guide RNA, isomerase/biosynthetic protein/RNA complex; HET: ATP; 2.30A {Pyrococcus furiosus} (B:)
Probab=27.78 E-value=37 Score=15.24 Aligned_cols=20 Identities=30% Similarity=0.630 Sum_probs=11.4
Q ss_pred EEECCCCCEECC--EEECCHHH
Q ss_conf 999899976022--66331006
Q gi|254780251|r 85 VLIDNKKDLLAS--RVFGPVPR 104 (122)
Q Consensus 85 VLin~~~~p~Gt--RI~Gpv~~ 104 (122)
+|.++++.++|. .|||||..
T Consensus 36 ~v~~e~~~~iG~V~evFGpV~~ 57 (104)
T 2hvy_B 36 RVVDKRLQFVGIVKDVFGPVKM 57 (104)
T ss_dssp EEECTTCCEEEEEEEEEEESSS
T ss_pred EEEECCCCEEEEEEEEECCCCC
T ss_conf 9993399698999999888898
No 10
>>1mkh_A Metrs;, C-terminal domain of methionyl-tRNA synthetase; beta barrel, dimerization domain, ligase; 2.01A {Pyrococcus abyssi} (A:)
Probab=27.10 E-value=16 Score=17.30 Aligned_cols=92 Identities=18% Similarity=0.204 Sum_probs=43.4
Q ss_pred CCCCCEEEEEECCCCEEEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCEEEEEEEEECCCE-ECCCCCEEEEC
Q ss_conf 67786899996789429999997268876425738889999982057872147737899999711351-76898888618
Q gi|254780251|r 2 IQMQTSLSISDNSGARLVKCIKVLGGSKRKCASIGDTVVVAVKEVIPRSKVKKGSVQKAIIVRVSYGI-RRSDGSVVRFD 80 (122)
Q Consensus 2 Iq~~t~l~v~DNSGak~v~cI~v~~~~~~~~a~vGD~I~vsVk~~~p~~k~kkg~v~~avIVrtkk~~-~R~dG~~i~F~ 80 (122)
|..+..+.+-++.++..+....+--|...+ .|+...+...+...+--..+.-.+.+..++-. -...|+...++
T Consensus 13 i~vg~V~~~~~hp~adkL~v~~Vd~G~~~~------~ivtg~~n~~~~~~l~ga~v~~~~ni~~~ki~Gv~SeGMl~s~~ 86 (107)
T 1mkh_A 13 LRVGKIIEVKDHPNADKLYVVKVDLGDEVR------TLVAGLKKYYKPEELLNRYVVVVANLEPKKLRGIGSQGMLLAAD 86 (107)
T ss_dssp EEEEEEEEEEECTTCSSCEEEEEECSSCEE------EEEECCTTTCCHHHHTTCEEEEETTSCCEEC-CCEECCCBCEEE
T ss_pred EEEEEEEEEEECCCCCCEEEEEEECCCCEE------EEEEECCEEECCCCCCCCEEEEECCCCCCCCCCCCCCEEEEEEE
T ss_conf 899999999766998733899998389046------89970010417400069898364277863499914788999765
Q ss_pred C--EEEEEECCCCCEECCEEE
Q ss_conf 8--059999899976022663
Q gi|254780251|r 81 K--NAAVLIDNKKDLLASRVF 99 (122)
Q Consensus 81 ~--Na~VLin~~~~p~GtRI~ 99 (122)
+ ...++.=++..|.|+|+.
T Consensus 87 elg~~~il~~~~~~~~G~~i~ 107 (107)
T 1mkh_A 87 DGERVALLMPDKEVKLGAKVR 107 (107)
T ss_dssp CSSCEEECCCSSCCCTTCEEC
T ss_pred CCCCEEEEECCCCCCCCCCCC
T ss_conf 699379997999988888169
No 11
>>3lhn_A Lipoprotein; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2, lipid binding protein; HET: MSE GOL; 1.42A {Shewanella oneidensis} (A:)
Probab=25.44 E-value=44 Score=14.84 Aligned_cols=32 Identities=22% Similarity=0.256 Sum_probs=25.7
Q ss_pred EECCCEECCCCCEEEECCEEEEEECCCCCEEC
Q ss_conf 71135176898888618805999989997602
Q gi|254780251|r 64 RVSYGIRRSDGSVVRFDKNAAVLIDNKKDLLA 95 (122)
Q Consensus 64 rtkk~~~R~dG~~i~F~~Na~VLin~~~~p~G 95 (122)
++...+.-.++++.+.++|...++|.+++|+-
T Consensus 81 ~~~~~i~l~~~~~y~v~~~~L~~ld~~g~~i~ 112 (126)
T 3lhn_A 81 SNGSKITLSDGSKYLVGENQLLXLDTEGNRIT 112 (126)
T ss_dssp TTSCEEEETTSCEEEEETTEEEEBCTTSCBCC
T ss_pred CCCCEEEECCCCEEEECCCEEEEECCCCCCCC
T ss_conf 78769996599889988999998567999666
No 12
>>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} (A:535-722)
Probab=23.43 E-value=20 Score=16.84 Aligned_cols=91 Identities=18% Similarity=0.191 Sum_probs=43.3
Q ss_pred CCCCEEEEEECCCCEEEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCEEEEEEEEECCCEE-CCCCCEEEECC
Q ss_conf 77868999967894299999972688764257388899999820578721477378999997113517-68988886188
Q gi|254780251|r 3 QMQTSLSISDNSGARLVKCIKVLGGSKRKCASIGDTVVVAVKEVIPRSKVKKGSVQKAIIVRVSYGIR-RSDGSVVRFDK 81 (122)
Q Consensus 3 q~~t~l~v~DNSGak~v~cI~v~~~~~~~~a~vGD~I~vsVk~~~p~~k~kkg~v~~avIVrtkk~~~-R~dG~~i~F~~ 81 (122)
..+..+.|.+..++....+..+--|...+ .|+...+...+...+--..+.-...+..++-.. ...||...+++
T Consensus 95 ~vg~I~~ve~hp~adkL~v~~Vd~G~~~r------~Ivsg~~~~~~~~~l~g~~v~~~~nlkp~kl~Gv~SeGMl~sa~e 168 (188)
T 1rqg_A 95 RVGKIIEVKDHPNADKLYVVKVDLGDEVR------TLVAGLKKYYKPEELLNRYVVVVANLEPKKLRGIGSQGMLLAADD 168 (188)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEEEEEEECCCCCEEEEEEEECCCCCC------EEEECHHHHCCHHHHCCCEEEEEECCCCCHHCCCCCCEEEEEEEC
T ss_conf 78999996767998725889997389750------898453455999894799899997377300167664407999737
Q ss_pred EEE--EEECCCCCEECCEEE
Q ss_conf 059--999899976022663
Q gi|254780251|r 82 NAA--VLIDNKKDLLASRVF 99 (122)
Q Consensus 82 Na~--VLin~~~~p~GtRI~ 99 (122)
-.- +|.-++.-|.||+|.
T Consensus 169 lg~~~il~~~~~~~~G~~i~ 188 (188)
T 1rqg_A 169 GERVALLMPDKEVKLGAKVR 188 (188)
T ss_dssp --------------------
T ss_pred CCEEEEECCCCCCCCCCCCC
T ss_conf 99789976899988989289
No 13
>>3bwz_A Cellulosomal scaffoldin adaptor protein B; cohesins II, cellulosome, structural protein; 1.20A {Acetivibrio cellulolyticus} PDB: 3f2l_A 1qzn_A 1zv9_A* (A:)
Probab=21.52 E-value=58 Score=14.14 Aligned_cols=63 Identities=10% Similarity=0.121 Sum_probs=34.1
Q ss_pred CCCCCCCCEEEEEEEECCCCCCCCCCCEEEEEEEEECCCEECCCCCEEEECCEEEEEECCCCCEECCEEECCHHHHHHCC
Q ss_conf 64257388899999820578721477378999997113517689888861880599998999760226633100666417
Q gi|254780251|r 30 RKCASIGDTVVVAVKEVIPRSKVKKGSVQKAIIVRVSYGIRRSDGSVVRFDKNAAVLIDNKKDLLASRVFGPVPRELRIK 109 (122)
Q Consensus 30 ~~~a~vGD~I~vsVk~~~p~~k~kkg~v~~avIVrtkk~~~R~dG~~i~F~~Na~VLin~~~~p~GtRI~Gpv~~elr~~ 109 (122)
+..|.+||+|.++|+--. ++. +-+.= ..|+||-+..=-+++.++|..++-+ |..-+|-.+
T Consensus 13 Ktta~VGdIItATIkv~n----i~n---fAGYQ------------vNIKYDP~vLQpV~~tg~~y~~st~-P~~G~lLn~ 72 (181)
T 3bwz_A 13 KTTASVGEIVTASINIKN----ITN---FSGCQ------------LNMKYDPAVLQPVTSSGVAYTKSTM-PGAGTILNS 72 (181)
T ss_dssp CSCCCTTCEEEEEEEEES----CTT---EEEEE------------EEEECCTTTEEEECTTSCBCCTTCC-CEECSSSCS
T ss_pred CCCCCCCCEEEEEEEECC----CCC---CCEEE------------EEEEECHHHEECCCCCCCCCCCCCC-CCCCCEECC
T ss_conf 563002438999999757----764---00058------------9746585782641888874445668-988756054
Q ss_pred CCE
Q ss_conf 980
Q gi|254780251|r 110 GHL 112 (122)
Q Consensus 110 ~~~ 112 (122)
+|.
T Consensus 73 ~Y~ 75 (181)
T 3bwz_A 73 DFN 75 (181)
T ss_dssp SSC
T ss_pred CCC
T ss_conf 667
No 14
>>3kcp_B Cellulosome anchoring protein, cohesin region; dockerin, X-module, carbohydrate metabolism, cell WALL biogenesis/degradation; 1.94A {Clostridium thermocellum atcc 27405} PDB: 2b59_A (B:)
Probab=21.04 E-value=59 Score=14.08 Aligned_cols=16 Identities=25% Similarity=0.476 Sum_probs=13.3
Q ss_pred CCCCCCCCEEEEEEEE
Q ss_conf 6425738889999982
Q gi|254780251|r 30 RKCASIGDTVVVAVKE 45 (122)
Q Consensus 30 ~~~a~vGD~I~vsVk~ 45 (122)
+..|.+||+|.++|+-
T Consensus 27 Kt~a~VGdIItATIkv 42 (187)
T 3kcp_B 27 RNKGEVGDILIGTVRI 42 (187)
T ss_dssp CSCCCTTCEEEEEEEE
T ss_pred CCCCCCCCEEEEEEEE
T ss_conf 6501369899999996
No 15
>>2bm3_A Type 2 cohesin, scaffolding dockerin binding protein A; cellulosome, nuclear protein; 1.8A {Clostridium thermocellum} (A:)
Probab=20.03 E-value=62 Score=13.95 Aligned_cols=16 Identities=25% Similarity=0.476 Sum_probs=13.2
Q ss_pred CCCCCCCCEEEEEEEE
Q ss_conf 6425738889999982
Q gi|254780251|r 30 RKCASIGDTVVVAVKE 45 (122)
Q Consensus 30 ~~~a~vGD~I~vsVk~ 45 (122)
+..|.+||+|.++|+-
T Consensus 15 Kt~a~VGdIItAtI~v 30 (166)
T 2bm3_A 15 RNKGEVGDILIGTVRI 30 (166)
T ss_dssp CSCCCTTCEEEEEEEE
T ss_pred CCCCCCCCEEEEEEEE
T ss_conf 5630124389999995
Done!