Query gi|254780251|ref|YP_003064664.1| 50S ribosomal protein L14 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 122
No_of_seqs 112 out of 994
Neff 5.2
Searched_HMMs 13730
Date Tue May 24 05:09:20 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780251.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1whia_ b.39.1.1 (A:) Ribosoma 100.0 0 0 324.9 11.6 122 1-122 1-122 (122)
2 d2j01o1 b.39.1.1 (O:1-122) Rib 100.0 0 0 322.9 11.0 122 1-122 1-122 (122)
3 d2gyci1 b.39.1.1 (I:2-122) Rib 100.0 0 0 312.5 8.7 120 2-121 1-121 (121)
4 d1vqok1 b.39.1.1 (K:1-132) Rib 100.0 0 0 298.0 10.8 118 1-122 11-132 (132)
5 d1oj5a_ d.110.3.8 (A:) PAS dom 27.5 15 0.0011 15.2 2.0 31 64-94 67-97 (109)
6 d2ey4c1 b.43.3.5 (C:1-73) Gar1 20.9 21 0.0015 14.4 1.7 22 84-105 28-51 (73)
7 d1n9la_ d.110.3.6 (A:) Putativ 19.9 25 0.0018 13.9 4.0 29 68-96 72-100 (109)
8 d1zv9a1 b.2.2.2 (A:3-173) Cell 19.8 25 0.0019 13.9 2.4 16 30-45 11-26 (171)
9 d2bm3a1 b.2.2.2 (A:5-166) Scaf 19.6 26 0.0019 13.9 2.4 16 30-45 11-26 (162)
10 d1tyja1 b.2.2.2 (A:2-171) Cell 19.2 26 0.0019 13.8 2.2 16 30-45 9-24 (170)
No 1
>d1whia_ b.39.1.1 (A:) Ribosomal protein L14 {Bacillus stearothermophilus [TaxId: 1422]}
Probab=100.00 E-value=0 Score=324.94 Aligned_cols=122 Identities=56% Similarity=0.849 Sum_probs=120.6
Q ss_pred CCCCCCEEEEEECCCCEEEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCEEEEEEEEECCCEECCCCCEEEEC
Q ss_conf 96778689999678942999999726887642573888999998205787214773789999971135176898888618
Q gi|254780251|r 1 MIQMQTSLSISDNSGARLVKCIKVLGGSKRKCASIGDTVVVAVKEVIPRSKVKKGSVQKAIIVRVSYGIRRSDGSVVRFD 80 (122)
Q Consensus 1 MIq~~t~l~v~DNSGak~v~cI~v~~~~~~~~a~vGD~I~vsVk~~~p~~k~kkg~v~~avIVrtkk~~~R~dG~~i~F~ 80 (122)
|||.+|+|+|+|||||+.++||++++++++++|++||+|++|||+++|+++++||++++|+||||||+++|+||++++||
T Consensus 1 MIq~~t~l~v~DNSGak~v~cI~v~~~~~~~~a~vGD~I~vsVk~~~~~~~vkkg~v~~AvIVrtkk~~~R~dG~~i~F~ 80 (122)
T d1whia_ 1 MIQQESRLKVADNSGAREVLVIKVLGGSGRRYANIGDVVVATVKDATPGGVVKKGQVVKAVVVRTKRGVRRPDGSYIRFD 80 (122)
T ss_dssp CBCTTCEEEECBSSSEEEEEEEEECSSTTCCCBCTTCEEEEEEEEECTTSSSCTTCEEEEEEEECSSCEECTTSCEECCS
T ss_pred CCCCCCEEEEEECCCCCEEEEEEEECCCCCCCCCCCCEEEEEEEECCCCCEEECCCCEEEEEEEEEEEEECCCCCEEEEC
T ss_conf 97657679874689987899999978878511332879999992301377067265102589988631431688668858
Q ss_pred CEEEEEECCCCCEECCEEECCHHHHHHCCCCEEEEEECCCCC
Q ss_conf 805999989997602266331006664179808875243129
Q gi|254780251|r 81 KNAAVLIDNKKDLLASRVFGPVPRELRIKGHLKILSLAAEVV 122 (122)
Q Consensus 81 ~Na~VLin~~~~p~GtRI~Gpv~~elr~~~~~Ki~slA~~vi 122 (122)
||||||+|++++|+|||||||+|+|||+++|+||+||||+||
T Consensus 81 ~Na~VLl~~~~~P~GTrI~Gpv~~elr~~~~~Ki~sLA~~vi 122 (122)
T d1whia_ 81 ENACVIIRDDKSPRGTRIFGPVARELRDKDFMKIISLAPEVI 122 (122)
T ss_dssp SCEEEEECTTSCBSSSCBCSCBCTHHHHTTCHHHHHHCSCBC
T ss_pred CCEEEEECCCCCEEEEEEECCCHHHHHHCCCCHHHCCCCHHC
T ss_conf 987999979999912369504019986468825650420029
No 2
>d2j01o1 b.39.1.1 (O:1-122) Ribosomal protein L14 {Thermus thermophilus [TaxId: 274]}
Probab=100.00 E-value=0 Score=322.88 Aligned_cols=122 Identities=57% Similarity=0.881 Sum_probs=120.6
Q ss_pred CCCCCCEEEEEECCCCEEEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCEEEEEEEEECCCEECCCCCEEEEC
Q ss_conf 96778689999678942999999726887642573888999998205787214773789999971135176898888618
Q gi|254780251|r 1 MIQMQTSLSISDNSGARLVKCIKVLGGSKRKCASIGDTVVVAVKEVIPRSKVKKGSVQKAIIVRVSYGIRRSDGSVVRFD 80 (122)
Q Consensus 1 MIq~~t~l~v~DNSGak~v~cI~v~~~~~~~~a~vGD~I~vsVk~~~p~~k~kkg~v~~avIVrtkk~~~R~dG~~i~F~ 80 (122)
|||.+|+|+|+|||||+.++||++|+++++++|++||+|++|||+++|+++++||++++|+|||||++++|.||++++||
T Consensus 1 MIq~~t~l~v~DNSGak~v~cI~v~~~~~~~~a~vGD~I~vsVkk~~~~~~vkkg~v~~AvIVrtkk~~~r~dG~~i~F~ 80 (122)
T d2j01o1 1 MIQPQTYLEVADNTGARKIMCIRVLKGSNAKYATVGDVIVASVKEAIPRGAVKEGDVVKAVVVRTKKEIKRPDGSAIRFD 80 (122)
T ss_dssp CCCTTCEEEECSSSSCCEEEEEEECSSTTCCCCCTTCEEEEEEEECCTTCSSCSSCEEEEEEEECSSCEECTTSCEEECS
T ss_pred CCCCCCEEEEEECCCCCEEEEEEEECCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCEEEEEEECCEECCCCCEEECC
T ss_conf 97667678882589875999999958888766644729999995025577223574734067753063486999999828
Q ss_pred CEEEEEECCCCCEECCEEECCHHHHHHCCCCEEEEEECCCCC
Q ss_conf 805999989997602266331006664179808875243129
Q gi|254780251|r 81 KNAAVLIDNKKDLLASRVFGPVPRELRIKGHLKILSLAAEVV 122 (122)
Q Consensus 81 ~Na~VLin~~~~p~GtRI~Gpv~~elr~~~~~Ki~slA~~vi 122 (122)
||||||+|++++|+||||+||+|+|||+++|+||+||||+||
T Consensus 81 ~Na~VLl~~~~~p~GTrI~Gpv~~elr~~~~~Ki~slA~~vi 122 (122)
T d2j01o1 81 DNAAVIINNQLEPRGTRVFGPVARELREKGFMKIVSLAPEVL 122 (122)
T ss_dssp SCEEEEECTTSCCSSSCCCSCCCTHHHHHCCHHHHHHCSCCC
T ss_pred CCEEEEECCCCCEEEEEEECCCHHHHHHCCCCHHHCCCCCCC
T ss_conf 977999989999935379635239986468832203541009
No 3
>d2gyci1 b.39.1.1 (I:2-122) Ribosomal protein L14 {Escherichia coli [TaxId: 562]}
Probab=100.00 E-value=0 Score=312.46 Aligned_cols=120 Identities=58% Similarity=0.937 Sum_probs=117.6
Q ss_pred CCCCCEEEEEECCCCEEEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCEEEEEEEEECCCEECCCCCEEEECC
Q ss_conf 67786899996789429999997268876425738889999982057872147737899999711351768988886188
Q gi|254780251|r 2 IQMQTSLSISDNSGARLVKCIKVLGGSKRKCASIGDTVVVAVKEVIPRSKVKKGSVQKAIIVRVSYGIRRSDGSVVRFDK 81 (122)
Q Consensus 2 Iq~~t~l~v~DNSGak~v~cI~v~~~~~~~~a~vGD~I~vsVk~~~p~~k~kkg~v~~avIVrtkk~~~R~dG~~i~F~~ 81 (122)
||.+|+|+|+|||||++++||++|+++++++|.+||+|++|||++.|+++++||++++|+|||||++++|+||++++|||
T Consensus 1 IQ~~S~l~v~DNSGak~v~cI~vl~~~~~~~a~vGD~I~vsVk~~~~~~~vkkg~v~~AvIVrtkk~~~R~dG~~i~F~~ 80 (121)
T d2gyci1 1 IQEQTMLNVADNSGARRVMCIKVLGGSHRRYAGVGDIIKITIKEAIPRGKVKKGDVLKAVVVRTKKGVRRPDGSVIRFDG 80 (121)
T ss_dssp CCTTCEEEECSCSSBCEEEEEEETTCCSSSCCCTTCEEEECCCSBCSSSSCCTTCCEEEEEEECSSCEECTTSCEECCSS
T ss_pred CCCCCEEEEEECCCCCEEEEEEEECCCCCCCCCCCCEEEEEEEECCCCCCCCCCCEEEEEEEEEEEEEECCCCEEEEECC
T ss_conf 97677588723898347999999688777657648389999998267984234638999998786327525980999489
Q ss_pred EEEEEECCCC-CEECCEEECCHHHHHHCCCCEEEEEECCCC
Q ss_conf 0599998999-760226633100666417980887524312
Q gi|254780251|r 82 NAAVLIDNKK-DLLASRVFGPVPRELRIKGHLKILSLAAEV 121 (122)
Q Consensus 82 Na~VLin~~~-~p~GtRI~Gpv~~elr~~~~~Ki~slA~~v 121 (122)
|||||+|+++ +|+|||||||||+|||.++|+||+||||+|
T Consensus 81 Na~VLi~~~~~~p~GTrI~Gpv~~elr~~~~~Ki~slA~~v 121 (121)
T d2gyci1 81 NACVLLNNNSEQPIGTRIFGPVTRELRSEKFMKIISLAPEV 121 (121)
T ss_dssp CEEEEECSSSSCBSSSCCCSCBCSTTSSSSCSHHHHTCSCB
T ss_pred CEEEEECCCCCCCCCCEEECCCHHHHHHCCCCHHHCCCCCC
T ss_conf 87999807999846676974565988675883335115669
No 4
>d1vqok1 b.39.1.1 (K:1-132) Ribosomal protein L14 {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=100.00 E-value=0 Score=297.97 Aligned_cols=118 Identities=34% Similarity=0.519 Sum_probs=111.3
Q ss_pred CCCCCCEEEEEECCCCEEEEEEEECCCCCC----CCCCCCCEEEEEEEECCCCCCCCCCCEEEEEEEEECCCEECCCCCE
Q ss_conf 967786899996789429999997268876----4257388899999820578721477378999997113517689888
Q gi|254780251|r 1 MIQMQTSLSISDNSGARLVKCIKVLGGSKR----KCASIGDTVVVAVKEVIPRSKVKKGSVQKAIIVRVSYGIRRSDGSV 76 (122)
Q Consensus 1 MIq~~t~l~v~DNSGak~v~cI~v~~~~~~----~~a~vGD~I~vsVk~~~p~~k~kkg~v~~avIVrtkk~~~R~dG~~ 76 (122)
|||.+|+|+|+|||||+.++||++++++.+ ++|++||+|++|||++.|+ +||++++|+|||||++++|+||++
T Consensus 11 ~Iq~~s~L~v~DNSGak~v~cI~V~~~~~~k~r~~~a~vGD~IvvsVk~~~~~---~k~~v~~AvIVrtkk~~~R~dG~~ 87 (132)
T d1vqok1 11 GLEKGSLITCADNTGARELKVISVHGYSGTKNRLPKAGLGDKITVSVTKGTPE---MRRQVLEAVVVRQRKPIRRPDGTR 87 (132)
T ss_dssp CEETTCEEEECBSSSEEEEEEEEETTCCCCTTCCCEECTTCEEEEEEEEECTT---TTTCEEEEEEEECSSCEECTTSCE
T ss_pred CCCCCCEEEEEECCCCCEEEEEEEECCCCCCCCCCCCCCCEEEEEEEEECCCC---CCCCEEEEEEEEECCCEECCCCCE
T ss_conf 13516789982188876699999945456445465465050999999406777---666607999998567478799998
Q ss_pred EEECCEEEEEECCCCCEECCEEECCHHHHHHCCCCEEEEEECCCCC
Q ss_conf 8618805999989997602266331006664179808875243129
Q gi|254780251|r 77 VRFDKNAAVLIDNKKDLLASRVFGPVPRELRIKGHLKILSLAAEVV 122 (122)
Q Consensus 77 i~F~~Na~VLin~~~~p~GtRI~Gpv~~elr~~~~~Ki~slA~~vi 122 (122)
++||||||||+|++++|+|||||||||+|||++ |+||+|||++||
T Consensus 88 i~FddNa~VLi~~~~~p~GTRI~GpV~~Elr~k-~~Ki~sLA~~iv 132 (132)
T d1vqok1 88 VKFEDNAAVIVDENEDPRGTELKGPIAREVAQR-FGSVASAATMIV 132 (132)
T ss_dssp EEESSCEEEEECTTSCBSSSCBCSCBCHHHHHH-SHHHHTTCSCBC
T ss_pred EECCCCEEEEECCCCCEEEEEEECCHHHHHHHH-HHHHHHCCCCCC
T ss_conf 981797799998999992607956476999865-058885120019
No 5
>d1oj5a_ d.110.3.8 (A:) PAS domain of steroid receptor coactivator 1A, NCo-A1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=27.55 E-value=15 Score=15.25 Aligned_cols=31 Identities=16% Similarity=0.259 Sum_probs=25.1
Q ss_pred EECCCEECCCCCEEEECCEEEEEECCCCCEE
Q ss_conf 7113517689888861880599998999760
Q gi|254780251|r 64 RVSYGIRRSDGSVVRFDKNAAVLIDNKKDLL 94 (122)
Q Consensus 64 rtkk~~~R~dG~~i~F~~Na~VLin~~~~p~ 94 (122)
..-+-++++||.++-...++-+..|++++|.
T Consensus 67 ~~~yR~~~kdG~~vWv~t~~~~~~~~~~~~~ 97 (109)
T d1oj5a_ 67 SPSYRFILNDGTMLSAHTRCKLCYPQSPDMQ 97 (109)
T ss_dssp CCCEEEECTTSCEEEEEEEEEEECC----CC
T ss_pred HHHHHHHHCCCCEEEEEEEEEEEECCCCCCC
T ss_conf 0556440236838999999999999999963
No 6
>d2ey4c1 b.43.3.5 (C:1-73) Gar1 homolog PF1791 {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=20.88 E-value=21 Score=14.45 Aligned_cols=22 Identities=27% Similarity=0.561 Sum_probs=17.0
Q ss_pred EEEECCCCCEECC--EEECCHHHH
Q ss_conf 9999899976022--663310066
Q gi|254780251|r 84 AVLIDNKKDLLAS--RVFGPVPRE 105 (122)
Q Consensus 84 ~VLin~~~~p~Gt--RI~Gpv~~e 105 (122)
.++.+++++.+|. .||||+..-
T Consensus 28 ~~v~~~~~~~iG~v~evfGpv~~P 51 (73)
T d2ey4c1 28 DRVVDKRLQFVGIVKDVFGPVKMP 51 (73)
T ss_dssp CEEECTTCCCCEEEEEEEEESSSC
T ss_pred CEEECCCCCEEEEEEEEECCCCCC
T ss_conf 996976895878999988888985
No 7
>d1n9la_ d.110.3.6 (A:) Putative blue light receptor, phot-lov1 domain {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}
Probab=19.94 E-value=25 Score=13.94 Aligned_cols=29 Identities=10% Similarity=-0.102 Sum_probs=24.5
Q ss_pred CEECCCCCEEEECCEEEEEECCCCCEECC
Q ss_conf 51768988886188059999899976022
Q gi|254780251|r 68 GIRRSDGSVVRFDKNAAVLIDNKKDLLAS 96 (122)
Q Consensus 68 ~~~R~dG~~i~F~~Na~VLin~~~~p~Gt 96 (122)
..+|+||+.+-.+-+...+.|++|++.|-
T Consensus 72 ~~~~kdG~~~w~~~~~~pi~d~~G~v~~~ 100 (109)
T d1n9la_ 72 LNYRKDGTPFWNLLTVTPIKTPDGRVSKF 100 (109)
T ss_dssp EEECTTSCEEEEEEEEEEEECTTSCEEEE
T ss_pred EEEECCCEEEEEEEEEEEEECCCCCEEEE
T ss_conf 88706883999998998899999999999
No 8
>d1zv9a1 b.2.2.2 (A:3-173) Cellulosomal scaffoldin adaptor protein B, ScaB {Acetivibrio cellulolyticus [TaxId: 35830]}
Probab=19.82 E-value=25 Score=13.93 Aligned_cols=16 Identities=25% Similarity=0.511 Sum_probs=13.2
Q ss_pred CCCCCCCCEEEEEEEE
Q ss_conf 6425738889999982
Q gi|254780251|r 30 RKCASIGDTVVVAVKE 45 (122)
Q Consensus 30 ~~~a~vGD~I~vsVk~ 45 (122)
+..|.+||+|.++|+-
T Consensus 11 Ktta~VGDII~AtI~v 26 (171)
T d1zv9a1 11 KTTASVGEIVTASINI 26 (171)
T ss_dssp CSCCCTTCEEEEEEEE
T ss_pred CCCEECCCEEEEEEEE
T ss_conf 6620024389999997
No 9
>d2bm3a1 b.2.2.2 (A:5-166) Scaffolding dockerin binding protein A, SdbA {Clostridium thermocellum [TaxId: 1515]}
Probab=19.60 E-value=26 Score=13.90 Aligned_cols=16 Identities=25% Similarity=0.476 Sum_probs=13.3
Q ss_pred CCCCCCCCEEEEEEEE
Q ss_conf 6425738889999982
Q gi|254780251|r 30 RKCASIGDTVVVAVKE 45 (122)
Q Consensus 30 ~~~a~vGD~I~vsVk~ 45 (122)
+..|.+||+|.++|+-
T Consensus 11 Kt~a~vGDiItAtI~v 26 (162)
T d2bm3a1 11 RNKGEVGDILIGTVRI 26 (162)
T ss_dssp CSCCCTTCEEEEEEEE
T ss_pred CCCEECCCEEEEEEEE
T ss_conf 5521024389999995
No 10
>d1tyja1 b.2.2.2 (A:2-171) Cellulosomal scaffoldin ScaA {Bacteroides cellulosolvens [TaxId: 35825]}
Probab=19.21 E-value=26 Score=13.85 Aligned_cols=16 Identities=19% Similarity=0.449 Sum_probs=13.2
Q ss_pred CCCCCCCCEEEEEEEE
Q ss_conf 6425738889999982
Q gi|254780251|r 30 RKCASIGDTVVVAVKE 45 (122)
Q Consensus 30 ~~~a~vGD~I~vsVk~ 45 (122)
+..|.+||+|.++|+-
T Consensus 9 Ktta~VGDII~AtI~v 24 (170)
T d1tyja1 9 NDKVAVGDKVTLTINV 24 (170)
T ss_dssp CSEECTTCEEEEEEEE
T ss_pred CCCEECCCEEEEEEEE
T ss_conf 6630024389999996
Done!