RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780251|ref|YP_003064664.1| 50S ribosomal protein L14
[Candidatus Liberibacter asiaticus str. psy62]
         (122 letters)



>1whi_A Ribosomal protein L14; rRNA-binding; 1.50A {Geobacillus
           stearothermophilus} (A:)
          Length = 122

 Score =  141 bits (357), Expect = 3e-35
 Identities = 68/122 (55%), Positives = 87/122 (71%)

Query: 1   MIQMQTSLSISDNSGARLVKCIKVLGGSKRKCASIGDTVVVAVKEVIPRSKVKKGSVQKA 60
           MIQ ++ L ++DNSGAR V  IKVLGGS R+ A+IGD VV  VK+  P   VKKG V KA
Sbjct: 1   MIQQESRLKVADNSGAREVLVIKVLGGSGRRYANIGDVVVATVKDATPGGVVKKGQVVKA 60

Query: 61  IIVRVSYGIRRSDGSVVRFDKNAAVLIDNKKDLLASRVFGPVPRELRIKGHLKILSLAAE 120
           ++VR   G+RR DGS +RFD+NA V+I + K    +R+FGPV RELR K  +KI+SLA E
Sbjct: 61  VVVRTKRGVRRPDGSYIRFDENACVIIRDDKSPRGTRIFGPVARELRDKDFMKIISLAPE 120

Query: 121 VV 122
           V+
Sbjct: 121 VI 122


>3bbo_M Ribosomal protein L14; large ribosomal subunit, spinach
           chloroplast ribosome, ribonucleoprotein particle,
           macromolecular complex; 9.40A {Spinacea oleracea} (M:)
          Length = 121

 Score =  136 bits (344), Expect = 9e-34
 Identities = 55/122 (45%), Positives = 86/122 (70%), Gaps = 1/122 (0%)

Query: 1   MIQMQTSLSISDNSGARLVKCIKVLGGSKRKCASIGDTVVVAVKEVIPRSKVKKGSVQKA 60
           MIQ QT L+++DNSGAR + CI+++G S R+ A IGD +V  +KE IP + +++  V +A
Sbjct: 1   MIQPQTHLNVADNSGARELMCIRIIGASNRRYARIGDVIVAVIKEAIPNTPLERSEVIRA 60

Query: 61  IIVRVSYGIRRSDGSVVRFDKNAAVLIDNKKDLLASRVFGPVPRELRIKGHLKILSLAAE 120
           ++VR    ++R +G ++R+D NAAV+ID + +   +R+FG + RELR K   KI+SLA E
Sbjct: 61  VVVRTCKELKRDNGMIIRYDDNAAVIIDQEGNPKGTRIFGAIARELRQK-FAKIVSLAPE 119

Query: 121 VV 122
           V+
Sbjct: 120 VL 121


>2j01_O 50S ribosomal protein L14; ribosome, tRNA, paromomycin,
          mRNA, translation; 2.8A {Thermus thermophilus} (O:1-99)
          Length = 99

 Score =  120 bits (304), Expect = 4e-29
 Identities = 53/99 (53%), Positives = 72/99 (72%)

Query: 1  MIQMQTSLSISDNSGARLVKCIKVLGGSKRKCASIGDTVVVAVKEVIPRSKVKKGSVQKA 60
          MIQ QT L ++DN+GAR + CI+VL GS  K A++GD +V +VKE IPR  VK+G V KA
Sbjct: 1  MIQPQTYLEVADNTGARKIMCIRVLKGSNAKYATVGDVIVASVKEAIPRGAVKEGDVVKA 60

Query: 61 IIVRVSYGIRRSDGSVVRFDKNAAVLIDNKKDLLASRVF 99
          ++VR    I+R DGS +RFD NAAV+I+N+ +   +RVF
Sbjct: 61 VVVRTKKEIKRPDGSAIRFDDNAAVIINNQLEPRGTRVF 99


>3i1n_K 50S ribosomal protein L14; ribosome structure, protein-RNA
          complex, acetylation, ribonucleoprotein, ribosomal
          protein, RNA-binding, rRNA- binding, methylation; 3.19A
          {Escherichia coli k-12} PDB: 1p85_I 1p86_I 1vs8_K
          2aw4_K 2awb_K 1vs6_K 2i2v_K 2i2t_K* 2qao_K* 2qba_K*
          2qbc_K* 2qbe_K 2qbg_K 2qbi_K* 2qbk_K* 2qov_K 2qox_K
          2qoz_K* 2qp1_K* 2rdo_K ... (K:1-99)
          Length = 99

 Score =  115 bits (290), Expect = 2e-27
 Identities = 56/99 (56%), Positives = 74/99 (74%), Gaps = 1/99 (1%)

Query: 1  MIQMQTSLSISDNSGARLVKCIKVLGGSKRKCASIGDTVVVAVKEVIPRSKVKKGSVQKA 60
          MIQ QT L+++DNSGAR V CIKVLGGS R+ A +GD + + +KE IPR KVKKG V KA
Sbjct: 1  MIQEQTMLNVADNSGARRVMCIKVLGGSHRRYAGVGDIIKITIKEAIPRGKVKKGDVLKA 60

Query: 61 IIVRVSYGIRRSDGSVVRFDKNAAVLIDNK-KDLLASRV 98
          ++VR   G+RR DGSV+RFD NA VL++N  +  + +R+
Sbjct: 61 VVVRTKKGVRRPDGSVIRFDGNACVLLNNNSEQPIGTRI 99


>1vq8_K 50S ribosomal protein L14P; ribosome 50S, protein-protein
           complex, RNA-RNA complex, protein-RNA complex, peptidyl
           transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS;
           2.20A {Haloarcula marismortui} (K:1-106)
          Length = 106

 Score = 93.8 bits (233), Expect = 7e-21
 Identities = 34/98 (34%), Positives = 56/98 (57%), Gaps = 7/98 (7%)

Query: 1   MIQMQTSLSISDNSGARLVKCIKVLGGSKRK----CASIGDTVVVAVKEVIPRSKVKKGS 56
            ++  + ++ +DN+GAR +K I V G S  K     A +GD + V+V +  P     +  
Sbjct: 11  GLEKGSLITCADNTGARELKVISVHGYSGTKNRLPKAGLGDKITVSVTKGTPE---MRRQ 67

Query: 57  VQKAIIVRVSYGIRRSDGSVVRFDKNAAVLIDNKKDLL 94
           V +A++VR    IRR DG+ V+F+ NAAV++D  +D  
Sbjct: 68  VLEAVVVRQRKPIRRPDGTRVKFEDNAAVIVDENEDPR 105


>2zkr_k 60S ribosomal protein L23; protein-RNA complex, 60S
           ribosomal subunit, ribosomal protein/RNA complex; 8.70A
           {Canis familiaris} PDB: 1s1i_R (k:1-114)
          Length = 114

 Score = 91.4 bits (227), Expect = 4e-20
 Identities = 28/98 (28%), Positives = 50/98 (51%), Gaps = 7/98 (7%)

Query: 1   MIQMQTSLSISDNSGARLVKCIKVLGGSKRK----CASIGDTVVVAVKEVIPRSKVKKGS 56
            + +   ++ +DN+GA+ +  I V G   R      A +GD V+  VK+  P     +  
Sbjct: 19  GLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKP---ELRKK 75

Query: 57  VQKAIIVRVSYGIRRSDGSVVRFDKNAAVLIDNKKDLL 94
           V  A+++R     RR DG  + F+ NA V+++NK ++ 
Sbjct: 76  VHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMK 113


>1iq8_A Archaeosine tRNA-guanine transglycosylase; (alpha/beta)8
           barrel, riken structural genomics/proteomics initiative,
           RSGI; 2.20A {Pyrococcus horikoshii} (A:359-429)
          Length = 71

 Score = 29.7 bits (67), Expect = 0.15
 Identities = 9/31 (29%), Positives = 15/31 (48%)

Query: 76  VVRFDKNAAVLIDNKKDLLASRVFGPVPREL 106
           V R  + A  + +   +L+   +FG V R L
Sbjct: 23  VRRAKERAKSINERFGELVEHPIFGRVSRYL 53


>1so7_A Sialidase 2; neuraminidase, ganglioside, sugar-induced form,
           hydrolase; 1.49A {Homo sapiens} (A:1-79,A:271-382)
          Length = 191

 Score = 28.0 bits (62), Expect = 0.42
 Identities = 8/41 (19%), Positives = 13/41 (31%), Gaps = 3/41 (7%)

Query: 74  GSVVRFDKNAAVLIDNKKDLLASRVFGPVPRELRIKGHLKI 114
           GSV+ F    +      + LL +    P     R      +
Sbjct: 85  GSVISFPSPRSGPGSPAQWLLYT---HPTHSWQRADLGAYL 122


>1b12_A Signal peptidase I; serine proteinase, serine-dependant
           hydrolase, signal peptide processing, protein
           translocation, membrane bound proteinase; HET: 1PN;
           1.95A {Escherichia coli} (A:72-99,A:175-215)
          Length = 69

 Score = 25.6 bits (56), Expect = 2.2
 Identities = 7/20 (35%), Positives = 12/20 (60%)

Query: 85  VLIDNKKDLLASRVFGPVPR 104
           ++ DN+ +   SR +G VP 
Sbjct: 49  MMGDNRDNSADSRYWGFVPE 68


>1ytl_A Acetyl-COA decarbonylase/synthase complex epsilon subunit 2;
           structural genomics, protein structure initiative; 1.80A
           {Archaeoglobus fulgidus} (A:)
          Length = 174

 Score = 24.6 bits (53), Expect = 4.7
 Identities = 4/39 (10%), Positives = 11/39 (28%)

Query: 84  AVLIDNKKDLLASRVFGPVPRELRIKGHLKILSLAAEVV 122
           A  ++   D+             + K    ++  A   +
Sbjct: 1   AKALEQPFDVANIPGPKMATLLEKGKPVANMIKKAKRPL 39


>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA
           degradation, kinase, transferase; 2.60A {Escherichia
           coli} PDB: 1sro_A (A:151-239,A:464-723)
          Length = 349

 Score = 23.6 bits (50), Expect = 9.0
 Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 8/50 (16%)

Query: 4   MQTSLSISDNSGARLVKCIKVLGGSKRKCASIGDTVVVAVKEVIPRSKVK 53
            +  + IS  +  R+ K    L         +G  V V V EV  + +++
Sbjct: 277 KEGLVHISQIADKRVEKVTDYL--------QMGQEVPVKVLEVDRQGRIR 318


>2k0m_A Uncharacterized protein; structural genomics, unknown
          function, PSI-2, protein structure initiative; NMR
          {Rhodospirillum rubrum atcc 11170} (A:)
          Length = 104

 Score = 23.5 bits (51), Expect = 9.7
 Identities = 13/48 (27%), Positives = 19/48 (39%), Gaps = 6/48 (12%)

Query: 38 TVVVAVKEVIPRSKVKKGSVQKAIIVRVSYG------IRRSDGSVVRF 79
            +V   +  P +  K G   +   VR +        I R+DGS  RF
Sbjct: 43 AFLVEALKRHPDATSKIGPGVRNFEVRSADYGTQCFWILRTDGSEERF 90


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.320    0.135    0.363 

Gapped
Lambda     K      H
   0.267   0.0767    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 829,705
Number of extensions: 33661
Number of successful extensions: 89
Number of sequences better than 10.0: 1
Number of HSP's gapped: 84
Number of HSP's successfully gapped: 19
Length of query: 122
Length of database: 4,956,049
Length adjustment: 73
Effective length of query: 49
Effective length of database: 2,488,284
Effective search space: 121925916
Effective search space used: 121925916
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.0 bits)