RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780251|ref|YP_003064664.1| 50S ribosomal protein L14 [Candidatus Liberibacter asiaticus str. psy62] (122 letters) >1whi_A Ribosomal protein L14; rRNA-binding; 1.50A {Geobacillus stearothermophilus} (A:) Length = 122 Score = 141 bits (357), Expect = 3e-35 Identities = 68/122 (55%), Positives = 87/122 (71%) Query: 1 MIQMQTSLSISDNSGARLVKCIKVLGGSKRKCASIGDTVVVAVKEVIPRSKVKKGSVQKA 60 MIQ ++ L ++DNSGAR V IKVLGGS R+ A+IGD VV VK+ P VKKG V KA Sbjct: 1 MIQQESRLKVADNSGAREVLVIKVLGGSGRRYANIGDVVVATVKDATPGGVVKKGQVVKA 60 Query: 61 IIVRVSYGIRRSDGSVVRFDKNAAVLIDNKKDLLASRVFGPVPRELRIKGHLKILSLAAE 120 ++VR G+RR DGS +RFD+NA V+I + K +R+FGPV RELR K +KI+SLA E Sbjct: 61 VVVRTKRGVRRPDGSYIRFDENACVIIRDDKSPRGTRIFGPVARELRDKDFMKIISLAPE 120 Query: 121 VV 122 V+ Sbjct: 121 VI 122 >3bbo_M Ribosomal protein L14; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} (M:) Length = 121 Score = 136 bits (344), Expect = 9e-34 Identities = 55/122 (45%), Positives = 86/122 (70%), Gaps = 1/122 (0%) Query: 1 MIQMQTSLSISDNSGARLVKCIKVLGGSKRKCASIGDTVVVAVKEVIPRSKVKKGSVQKA 60 MIQ QT L+++DNSGAR + CI+++G S R+ A IGD +V +KE IP + +++ V +A Sbjct: 1 MIQPQTHLNVADNSGARELMCIRIIGASNRRYARIGDVIVAVIKEAIPNTPLERSEVIRA 60 Query: 61 IIVRVSYGIRRSDGSVVRFDKNAAVLIDNKKDLLASRVFGPVPRELRIKGHLKILSLAAE 120 ++VR ++R +G ++R+D NAAV+ID + + +R+FG + RELR K KI+SLA E Sbjct: 61 VVVRTCKELKRDNGMIIRYDDNAAVIIDQEGNPKGTRIFGAIARELRQK-FAKIVSLAPE 119 Query: 121 VV 122 V+ Sbjct: 120 VL 121 >2j01_O 50S ribosomal protein L14; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} (O:1-99) Length = 99 Score = 120 bits (304), Expect = 4e-29 Identities = 53/99 (53%), Positives = 72/99 (72%) Query: 1 MIQMQTSLSISDNSGARLVKCIKVLGGSKRKCASIGDTVVVAVKEVIPRSKVKKGSVQKA 60 MIQ QT L ++DN+GAR + CI+VL GS K A++GD +V +VKE IPR VK+G V KA Sbjct: 1 MIQPQTYLEVADNTGARKIMCIRVLKGSNAKYATVGDVIVASVKEAIPRGAVKEGDVVKA 60 Query: 61 IIVRVSYGIRRSDGSVVRFDKNAAVLIDNKKDLLASRVF 99 ++VR I+R DGS +RFD NAAV+I+N+ + +RVF Sbjct: 61 VVVRTKKEIKRPDGSAIRFDDNAAVIINNQLEPRGTRVF 99 >3i1n_K 50S ribosomal protein L14; ribosome structure, protein-RNA complex, acetylation, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA- binding, methylation; 3.19A {Escherichia coli k-12} PDB: 1p85_I 1p86_I 1vs8_K 2aw4_K 2awb_K 1vs6_K 2i2v_K 2i2t_K* 2qao_K* 2qba_K* 2qbc_K* 2qbe_K 2qbg_K 2qbi_K* 2qbk_K* 2qov_K 2qox_K 2qoz_K* 2qp1_K* 2rdo_K ... (K:1-99) Length = 99 Score = 115 bits (290), Expect = 2e-27 Identities = 56/99 (56%), Positives = 74/99 (74%), Gaps = 1/99 (1%) Query: 1 MIQMQTSLSISDNSGARLVKCIKVLGGSKRKCASIGDTVVVAVKEVIPRSKVKKGSVQKA 60 MIQ QT L+++DNSGAR V CIKVLGGS R+ A +GD + + +KE IPR KVKKG V KA Sbjct: 1 MIQEQTMLNVADNSGARRVMCIKVLGGSHRRYAGVGDIIKITIKEAIPRGKVKKGDVLKA 60 Query: 61 IIVRVSYGIRRSDGSVVRFDKNAAVLIDNK-KDLLASRV 98 ++VR G+RR DGSV+RFD NA VL++N + + +R+ Sbjct: 61 VVVRTKKGVRRPDGSVIRFDGNACVLLNNNSEQPIGTRI 99 >1vq8_K 50S ribosomal protein L14P; ribosome 50S, protein-protein complex, RNA-RNA complex, protein-RNA complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} (K:1-106) Length = 106 Score = 93.8 bits (233), Expect = 7e-21 Identities = 34/98 (34%), Positives = 56/98 (57%), Gaps = 7/98 (7%) Query: 1 MIQMQTSLSISDNSGARLVKCIKVLGGSKRK----CASIGDTVVVAVKEVIPRSKVKKGS 56 ++ + ++ +DN+GAR +K I V G S K A +GD + V+V + P + Sbjct: 11 GLEKGSLITCADNTGARELKVISVHGYSGTKNRLPKAGLGDKITVSVTKGTPE---MRRQ 67 Query: 57 VQKAIIVRVSYGIRRSDGSVVRFDKNAAVLIDNKKDLL 94 V +A++VR IRR DG+ V+F+ NAAV++D +D Sbjct: 68 VLEAVVVRQRKPIRRPDGTRVKFEDNAAVIVDENEDPR 105 >2zkr_k 60S ribosomal protein L23; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} PDB: 1s1i_R (k:1-114) Length = 114 Score = 91.4 bits (227), Expect = 4e-20 Identities = 28/98 (28%), Positives = 50/98 (51%), Gaps = 7/98 (7%) Query: 1 MIQMQTSLSISDNSGARLVKCIKVLGGSKRK----CASIGDTVVVAVKEVIPRSKVKKGS 56 + + ++ +DN+GA+ + I V G R A +GD V+ VK+ P + Sbjct: 19 GLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKP---ELRKK 75 Query: 57 VQKAIIVRVSYGIRRSDGSVVRFDKNAAVLIDNKKDLL 94 V A+++R RR DG + F+ NA V+++NK ++ Sbjct: 76 VHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMK 113 >1iq8_A Archaeosine tRNA-guanine transglycosylase; (alpha/beta)8 barrel, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii} (A:359-429) Length = 71 Score = 29.7 bits (67), Expect = 0.15 Identities = 9/31 (29%), Positives = 15/31 (48%) Query: 76 VVRFDKNAAVLIDNKKDLLASRVFGPVPREL 106 V R + A + + +L+ +FG V R L Sbjct: 23 VRRAKERAKSINERFGELVEHPIFGRVSRYL 53 >1so7_A Sialidase 2; neuraminidase, ganglioside, sugar-induced form, hydrolase; 1.49A {Homo sapiens} (A:1-79,A:271-382) Length = 191 Score = 28.0 bits (62), Expect = 0.42 Identities = 8/41 (19%), Positives = 13/41 (31%), Gaps = 3/41 (7%) Query: 74 GSVVRFDKNAAVLIDNKKDLLASRVFGPVPRELRIKGHLKI 114 GSV+ F + + LL + P R + Sbjct: 85 GSVISFPSPRSGPGSPAQWLLYT---HPTHSWQRADLGAYL 122 >1b12_A Signal peptidase I; serine proteinase, serine-dependant hydrolase, signal peptide processing, protein translocation, membrane bound proteinase; HET: 1PN; 1.95A {Escherichia coli} (A:72-99,A:175-215) Length = 69 Score = 25.6 bits (56), Expect = 2.2 Identities = 7/20 (35%), Positives = 12/20 (60%) Query: 85 VLIDNKKDLLASRVFGPVPR 104 ++ DN+ + SR +G VP Sbjct: 49 MMGDNRDNSADSRYWGFVPE 68 >1ytl_A Acetyl-COA decarbonylase/synthase complex epsilon subunit 2; structural genomics, protein structure initiative; 1.80A {Archaeoglobus fulgidus} (A:) Length = 174 Score = 24.6 bits (53), Expect = 4.7 Identities = 4/39 (10%), Positives = 11/39 (28%) Query: 84 AVLIDNKKDLLASRVFGPVPRELRIKGHLKILSLAAEVV 122 A ++ D+ + K ++ A + Sbjct: 1 AKALEQPFDVANIPGPKMATLLEKGKPVANMIKKAKRPL 39 >3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A (A:151-239,A:464-723) Length = 349 Score = 23.6 bits (50), Expect = 9.0 Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 8/50 (16%) Query: 4 MQTSLSISDNSGARLVKCIKVLGGSKRKCASIGDTVVVAVKEVIPRSKVK 53 + + IS + R+ K L +G V V V EV + +++ Sbjct: 277 KEGLVHISQIADKRVEKVTDYL--------QMGQEVPVKVLEVDRQGRIR 318 >2k0m_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Rhodospirillum rubrum atcc 11170} (A:) Length = 104 Score = 23.5 bits (51), Expect = 9.7 Identities = 13/48 (27%), Positives = 19/48 (39%), Gaps = 6/48 (12%) Query: 38 TVVVAVKEVIPRSKVKKGSVQKAIIVRVSYG------IRRSDGSVVRF 79 +V + P + K G + VR + I R+DGS RF Sbjct: 43 AFLVEALKRHPDATSKIGPGVRNFEVRSADYGTQCFWILRTDGSEERF 90 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.320 0.135 0.363 Gapped Lambda K H 0.267 0.0767 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 829,705 Number of extensions: 33661 Number of successful extensions: 89 Number of sequences better than 10.0: 1 Number of HSP's gapped: 84 Number of HSP's successfully gapped: 19 Length of query: 122 Length of database: 4,956,049 Length adjustment: 73 Effective length of query: 49 Effective length of database: 2,488,284 Effective search space: 121925916 Effective search space used: 121925916 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 50 (23.0 bits)