HHsearch alignment of GI: 254780252 and MMDB domain: 2zkq_q_
>2zkq_q (q:) 40S ribosomal protein S11E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} PDB: 1s1h_Q
Probab=99.97 E-value=1.3e-30 Score=188.47 Aligned_cols=78 Identities=24% Similarity=0.420 Sum_probs=74.5
Q ss_pred CCCEEEEEEEEEECCCCEEEEEEEEEEECCCCCEEECCCEEEEECCCC--CCCCCCCEEEEEECCCCCCCEEEEEEEEEE
Q ss_conf 973479999996089861999997188786413087351038986886--604068789999637754320399997640
Q gi|254780252|r 1 MPKRVLQGMVVSDKSEKTIIVLVERRFSHPRFQKTIRRSKRYAVHDEN--NKYKVGDFVSIEESAPISKKKSWLVIDSEG 78 (79)
Q Consensus 1 m~~k~l~G~Vvs~km~KTv~V~v~r~~~~~ky~K~~~~~kk~~vHD~~--~~~~~GD~V~i~e~rPiSK~K~~~vve~~~ 78 (79)
|++|+|.|+|+|++|+|||+|+++|++|||+|+||++++++|+||||. |+|++||+|+|+|||||||+|+|+|+++..
T Consensus 68 irgril~G~VvS~KM~KTvvV~v~~~~~~~kY~K~~kr~kky~aHd~~~~n~~kvGD~V~I~EcRPlSKtkrf~V~~Ii~ 147 (158)
T 2zkq_q 68 IRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDVQIGDIVTVGECRPLSKTVRFNVLKVTK 147 (158)
T ss_dssp ---CEEEEEEEECSSSCEEEEEEEEECSSTTCCCEEEEEEEECCBCCSSCCCC-CCCEEEEECCSCSSSCC-CEEEEEEE
T ss_pred EEEEEEEEEEEECCCCCCEEEEEEEEEECCCCCEEEEEEEEEEEECCHHCCCCCCCCEEEEEECCCCCCCEEEEEEEEEE
T ss_conf 61489999999633888779999999962643229885066899883220768899999998755688848799999987