RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254780252|ref|YP_003064665.1| 30S ribosomal protein S17
[Candidatus Liberibacter asiaticus str. psy62]
(79 letters)
>2vqe_Q 30S ribosomal protein S17; tRNA-binding, rRNA-binding,
metal-binding, zinc-finger, translation; HET: TM2 PAR;
2.5A {Thermus thermophilus} (Q:)
Length = 105
Score = 86.0 bits (213), Expect = 1e-18
Identities = 44/75 (58%), Positives = 56/75 (74%)
Query: 1 MPKRVLQGMVVSDKSEKTIIVLVERRFSHPRFQKTIRRSKRYAVHDENNKYKVGDFVSIE 60
MPK+VL G+VVSDK +KT+ VLVER+F HP + K I+RSK+Y HD KYK+GD V I
Sbjct: 1 MPKKVLTGVVVSDKMQKTVTVLVERQFPHPLYGKVIKRSKKYLAHDPEEKYKLGDVVEII 60
Query: 61 ESAPISKKKSWLVID 75
ES PISK+K + V+
Sbjct: 61 ESRPISKRKRFRVLR 75
>3i1m_Q 30S ribosomal protein S17; ribosome structure, protein-RNA
complex, ribonucleoprotein, ribosomal protein,
RNA-binding, rRNA-binding, antibiotic resistance; 3.19A
{Escherichia coli k-12} PDB: 1vs7_Q* 3e1a_J 3e1c_J
1vs5_Q 3i1o_Q 3i1q_Q 3i1s_Q 3i1z_Q 3i21_Q 2qal_Q*
1p6g_Q 1p87_Q 2aw7_Q 2avy_Q 2i2u_Q 2i2p_Q* 2qan_Q*
2qb9_Q* 2qbb_Q* 2qbd_Q ... (Q:)
Length = 84
Score = 80.5 bits (199), Expect = 6e-17
Identities = 37/73 (50%), Positives = 49/73 (67%)
Query: 3 KRVLQGMVVSDKSEKTIIVLVERRFSHPRFQKTIRRSKRYAVHDENNKYKVGDFVSIEES 62
R LQG VVSDK EK+I+V +ER HP + K I+R+ + VHDENN+ +GD V I E
Sbjct: 5 IRTLQGRVVSDKMEKSIVVAIERFVKHPIYGKFIKRTTKLHVHDENNECGIGDVVEIREC 64
Query: 63 APISKKKSWLVID 75
P+SK KSW ++
Sbjct: 65 RPLSKTKSWTLVR 77
>1qd7_I S17 ribosomal protein; 30S ribosomal subunit, low
resolution model, ribosome; 5.50A {Thermus
thermophilus} (I:)
Length = 89
Score = 80.6 bits (199), Expect = 6e-17
Identities = 34/73 (46%), Positives = 49/73 (67%)
Query: 3 KRVLQGMVVSDKSEKTIIVLVERRFSHPRFQKTIRRSKRYAVHDENNKYKVGDFVSIEES 62
++V G VVSDK +KTI VLVE HP + K ++ SK+Y HDE+N+ KVGD V I E+
Sbjct: 2 RKVYVGRVVSDKMDKTITVLVETYKKHPLYGKRVKYSKKYKAHDEHNEAKVGDIVKIMET 61
Query: 63 APISKKKSWLVID 75
P+S K + +++
Sbjct: 62 RPLSATKRFRLVE 74
>3bbn_Q Ribosomal protein S17; small ribosomal subunit, spinach
chloroplast ribosome, ribonucleoprotein particle,
macromolecular complex; 9.40A {Arabidopsis thaliana}
(Q:)
Length = 142
Score = 77.2 bits (190), Expect = 8e-16
Identities = 31/73 (42%), Positives = 49/73 (67%)
Query: 3 KRVLQGMVVSDKSEKTIIVLVERRFSHPRFQKTIRRSKRYAVHDENNKYKVGDFVSIEES 62
+ +QG VV S+KT+ V V R HP++++ +R K+Y HD +N++KVGD V +E+S
Sbjct: 60 MKTMQGRVVCATSDKTVAVEVVRLAPHPKYKRRVRMKKKYQAHDPDNQFKVGDVVRLEKS 119
Query: 63 APISKKKSWLVID 75
PISK KS++ +
Sbjct: 120 RPISKTKSFVALP 132
>2zkq_q 40S ribosomal protein S11E; protein-RNA complex, 40S
ribosomal subunit, ribosomal protein/RNA complex; 8.70A
{Canis familiaris} PDB: 1s1h_Q (q:)
Length = 158
Score = 76.5 bits (188), Expect = 1e-15
Identities = 19/76 (25%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Query: 1 MPKRVLQGMVVSDKSEKTIIVLVERRFSHPRFQKTIRRSKRYAVHDEN--NKYKVGDFVS 58
+ R+L G+V K ++TI++ + ++ + +R K +VH ++GD V+
Sbjct: 68 IRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDVQIGDIVT 127
Query: 59 IEESAPISKKKSWLVI 74
+ E P+SK + V+
Sbjct: 128 VGECRPLSKTVRFNVL 143
>3gms_A Putative NADPH:quinone reductase; structural genomics,
putative quinone oxidoreductase, unknown function,
PSI-2; 1.76A {Bacillus thuringiensis}
(A:1-126,A:276-340)
Length = 191
Score = 26.2 bits (57), Expect = 1.5
Identities = 4/30 (13%), Positives = 9/30 (30%)
Query: 42 YAVHDENNKYKVGDFVSIEESAPISKKKSW 71
Y + + D + +A + W
Sbjct: 102 YVKTSADFVVPIPDSIDDFTAAQMYSPYKW 131
>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural
genomics, NPPSFA; 2.30A {Thermus thermophilus HB8}
(A:1-148,A:294-343)
Length = 198
Score = 25.6 bits (55), Expect = 2.5
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 42 YAVHDENNKYKVGDFVSIEESAPISKKKSWLVID 75
Y V E N +S EE+A I K + + ++
Sbjct: 124 YVVLPEANLAPKPKNLSFEEAAAIPKSRLFPILR 157
>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain
dehydrogenase/reductase, oxidoreductase, fatty acid
synthesis (type 2), structural genomics; 1.75A {Homo
sapiens} PDB: 2vcy_A (A:1-149,A:305-357)
Length = 202
Score = 25.0 bits (54), Expect = 3.4
Identities = 6/34 (17%), Positives = 14/34 (41%)
Query: 42 YAVHDENNKYKVGDFVSIEESAPISKKKSWLVID 75
AV E +V + ++ +A + + +I
Sbjct: 125 EAVFSEEALIQVPSDIPLQSAATLGPDQFKELIL 158
>3ju4_A Endo-N-acetylneuraminidase; endonf, polysia,
high-resolution, glycosidase, hydrolase; HET: SLB;
0.98A {Enterobacteria phage K1F} PDB: 1v0e_A 1v0f_A*
(A:141-281)
Length = 141
Score = 25.0 bits (54), Expect = 3.5
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 26 RFSHPRFQKTIRRSKRYA-VHDENNKYKVGDFVSIEESA 63
R H T ++RYA +H ++ VGDFV+ SA
Sbjct: 45 RSLHLTGGITKAANQRYATIHVPDHGLFVGDFVNFSNSA 83
>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase;
HET: NAD; 2.20A {Acinetobacter calcoaceticus}
(A:1-166,A:318-371)
Length = 220
Score = 24.8 bits (53), Expect = 4.5
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 42 YAVHDENNKYKVGDFVSIEESAP 64
YA+ ENN KV V IE +P
Sbjct: 148 YALSRENNTVKVTKDVPIESGSP 170
>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea,
hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum
pernix} (A:1-166,A:310-359)
Length = 216
Score = 24.4 bits (52), Expect = 5.2
Identities = 3/25 (12%), Positives = 10/25 (40%)
Query: 42 YAVHDENNKYKVGDFVSIEESAPIS 66
+ + K+ +S E+ ++
Sbjct: 140 FMRTSHRSVIKLPKDISREKLVEMA 164
>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural
genomics, JCSG, PSI, protein structure initiative; 2.00A
{Thermotoga maritima} (A:41-178,A:327-380)
Length = 192
Score = 24.0 bits (51), Expect = 7.8
Identities = 5/27 (18%), Positives = 10/27 (37%)
Query: 39 SKRYAVHDENNKYKVGDFVSIEESAPI 65
S + E + KV + ++ A
Sbjct: 110 SSHIVLDPETDVLKVSEKDDLDVLAMA 136
>1yb5_A Quinone oxidoreductase; medium-chain
dehydrogenase/reductase, quinone reduction, structural
genomics, structural genomics consortium, SGC; HET: NAP;
1.85A {Homo sapiens} (A:1-153,A:319-351)
Length = 186
Score = 23.9 bits (51), Expect = 8.2
Identities = 6/24 (25%), Positives = 14/24 (58%)
Query: 42 YAVHDENNKYKVGDFVSIEESAPI 65
YA+ ++ YK+ + + ++ A I
Sbjct: 128 YALAADHTVYKLPEKLDFKQGAAI 151
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair
cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus
acidocaldarius} PDB: 3crw_1* (A:352-551)
Length = 200
Score = 23.9 bits (51), Expect = 8.3
Identities = 7/32 (21%), Positives = 18/32 (56%)
Query: 8 GMVVSDKSEKTIIVLVERRFSHPRFQKTIRRS 39
G + D ++K + L+++RF ++K ++
Sbjct: 162 GRAIRDVNDKCNVWLLDKRFESLYWKKNLKCL 193
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.317 0.132 0.368
Gapped
Lambda K H
0.267 0.0552 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 561,414
Number of extensions: 20056
Number of successful extensions: 80
Number of sequences better than 10.0: 1
Number of HSP's gapped: 79
Number of HSP's successfully gapped: 19
Length of query: 79
Length of database: 4,956,049
Length adjustment: 44
Effective length of query: 35
Effective length of database: 3,468,629
Effective search space: 121402015
Effective search space used: 121402015
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.4 bits)