HHsearch alignment of GI: 254780253 and MMDB domain: 3i1n_Y_

>3i1n_Y (Y:) 50S ribosomal protein L29; ribosome structure, protein-RNA complex, acetylation, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA- binding, methylation; 3.19A {Escherichia coli k-12} PDB: 1p85_W 1p86_W 1vs8_X 2aw4_X 2awb_X 1vs6_X 2i2v_Y 2j28_X 2i2t_Y* 2qao_X* 2qba_X* 2qbc_X* 2qbe_X 2qbg_X 2qbi_X* 2qbk_X* 2qov_X 2qox_X 2qoz_X* 2qp1_X* ...
Probab=99.76  E-value=1.7e-19  Score=136.66  Aligned_cols=62  Identities=35%  Similarity=0.650  Sum_probs=60.4

Q ss_pred             CCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             88899972999999999999999999999999537865469999999999999999999998
Q gi|254780253|r    2 LKFKDISVMSIDQLTEKLIQLKKDQMSLRFQKASGQIEKPFRMREVSRDIARIKTMMNSRVF   63 (67)
Q Consensus         2 mk~~elr~~s~~eL~~~l~~l~~el~~lrfq~~~gql~np~~ir~~Rk~IARi~Tvl~er~~   63 (67)
                      ||++|||++|++||.+.+.++++|||+||||+++||++|||+|+.+||+||||+||++|++.
T Consensus         1 Mk~~elr~~s~~eL~~~l~~lk~el~~Lr~q~~~g~l~n~~~ir~~rk~IARi~Tvl~er~~   62 (63)
T 3i1n_Y            1 MKAKELREKSVEELNTELLNLLREQFNLRMQAASGQLQQSHLLKQVRRDVARVKTLLNEKAG   62 (63)
T ss_dssp             CCTTTSSSCTTHHHHHHHHHHHHHHHHHHHHHHTTCCSCTHHHHHHHHHHHHHHHTTTTTSC
T ss_pred             CCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             98798773899999999999999999999999878887738999989999999999998855