Query gi|254780253|ref|YP_003064666.1| ribosomal protein L29 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 67
No_of_seqs 100 out of 1117
Neff 5.8
Searched_HMMs 23785
Date Tue May 24 06:47:43 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780253.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vq8_V 50S ribosomal protein L 99.8 7E-20 3E-24 138.0 8.7 66 1-66 3-69 (71)
2 1r73_A TM1492, 50S ribosomal p 99.8 2.3E-19 9.7E-24 135.0 8.6 65 2-66 1-65 (66)
3 2go5_5 Ribosomal protein L35; 99.8 2.1E-19 9E-24 135.2 8.3 65 1-65 5-69 (124)
4 2zjr_V 50S ribosomal protein L 99.8 1.2E-19 5E-24 136.7 6.4 65 2-66 1-65 (67)
5 2zkr_v 60S ribosomal protein L 99.8 1.5E-18 6.3E-23 130.1 8.4 65 1-65 3-68 (123)
6 3bbo_Z Ribosomal protein L29; 99.8 9.9E-19 4.2E-23 131.2 6.8 65 2-66 65-129 (173)
7 3ofq_Y 50S ribosomal protein L 99.7 6.7E-20 2.8E-24 138.2 -3.9 62 2-63 1-62 (63)
8 3jyw_X 60S ribosomal protein L 99.7 1E-18 4.2E-23 131.2 1.8 63 1-65 2-64 (86)
9 2wwb_N 60S ribosomal protein L 99.7 7.6E-18 3.2E-22 125.9 4.4 62 2-65 4-65 (120)
10 2j01_2 50S ribosomal protein L 99.6 2.5E-19 1.1E-23 134.7 -10.4 65 1-65 7-71 (72)
11 1xwy_A DNAse TATD, deoxyribonu 28.6 16 0.00066 16.7 1.1 28 4-31 237-264 (264)
12 1a62_A RHO; transcription term 22.6 38 0.0016 14.4 2.1 21 2-22 1-21 (130)
13 2wq1_A General control protein 22.4 28 0.0012 15.2 1.4 23 39-61 11-33 (33)
No 1
>1vq8_V 50S ribosomal protein L29P; ribosome 50S, protein-protein complex, RNA-RNA complex, protein-RNA complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: a.2.2.1 PDB: 1vq4_V* 1vq5_V* 1vq6_V* 1vq7_V* 1s72_V* 1vq9_V* 1vqk_V* 1vql_V* 1vqm_V* 1vqn_V* 1vqo_V* 1vqp_V* 1yhq_V* 1yi2_V* 1yij_V* 1yit_V* 1yj9_V* 1yjn_V* 1yjw_V* 2otj_V* ...
Probab=99.81 E-value=7e-20 Score=138.04 Aligned_cols=66 Identities=30% Similarity=0.405 Sum_probs=63.3
Q ss_pred CCCHHHHHHCCHHHHHHHHHHHHHHHHHHH-HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 988899972999999999999999999999-999537865469999999999999999999998532
Q gi|254780253|r 1 MLKFKDISVMSIDQLTEKLIQLKKDQMSLR-FQKASGQIEKPFRMREVSRDIARIKTMMNSRVFKNN 66 (67)
Q Consensus 1 mmk~~elr~~s~~eL~~~l~~l~~el~~lr-fq~~~gql~np~~ir~~Rk~IARi~Tvl~er~~~~~ 66 (67)
|||++|||++|.+||.+++.++++|||+|| ||+++||++|||+|+.+||+||||+||++|+..++.
T Consensus 3 ~mk~~elR~~s~eeL~~~l~elk~el~~LR~~q~~~gql~~~~~ir~~Rk~IARi~Til~Ek~~~~~ 69 (71)
T 1vq8_V 3 VLHVQEIRDMTPAEREAELDDLKTELLNARAVQAAGGAPENPGRIKELRKAIARIKTIQGEEGDLQE 69 (71)
T ss_dssp CSCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred CCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 6879999869999999999999999999999999818877708999999999999999999986250
No 2
>1r73_A TM1492, 50S ribosomal protein L29; ribosome, structural genomics, PSI, protein structure initiative, joint center for structural genomics; NMR {Thermotoga maritima} SCOP: a.2.2.1
Probab=99.79 E-value=2.3e-19 Score=134.98 Aligned_cols=65 Identities=32% Similarity=0.455 Sum_probs=62.6
Q ss_pred CCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 88899972999999999999999999999999537865469999999999999999999998532
Q gi|254780253|r 2 LKFKDISVMSIDQLTEKLIQLKKDQMSLRFQKASGQIEKPFRMREVSRDIARIKTMMNSRVFKNN 66 (67)
Q Consensus 2 mk~~elr~~s~~eL~~~l~~l~~el~~lrfq~~~gql~np~~ir~~Rk~IARi~Tvl~er~~~~~ 66 (67)
||++|||++|.+||.+++.+++++||+||||+++||++|||+|+.+||+||||+||++|++...+
T Consensus 1 Mk~~elr~ls~~eL~~~l~el~~el~~Lrfq~~~gql~~~~~ir~~Rk~IARi~Tvl~er~l~~~ 65 (66)
T 1r73_A 1 MKASELRNYTDEELKNLLEEKKRQLMELRFQLAMGQLKNTSLIKLTKRDIARIKTILRERELGIR 65 (66)
T ss_dssp CCCSHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 98798874899999999999999999999999877887718999999999999999999986657
No 3
>2go5_5 Ribosomal protein L35; SR, SRP, ribosome, translation/RNA complex; 7.40A {Triticum SP} PDB: 2j37_5
Probab=99.79 E-value=2.1e-19 Score=135.17 Aligned_cols=65 Identities=29% Similarity=0.376 Sum_probs=62.5
Q ss_pred CCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98889997299999999999999999999999953786546999999999999999999999853
Q gi|254780253|r 1 MLKFKDISVMSIDQLTEKLIQLKKDQMSLRFQKASGQIEKPFRMREVSRDIARIKTMMNSRVFKN 65 (67)
Q Consensus 1 mmk~~elr~~s~~eL~~~l~~l~~el~~lrfq~~~gql~np~~ir~~Rk~IARi~Tvl~er~~~~ 65 (67)
-||+.|||++|.+||.+.|.+++.|||+||||+++||++|||+|+.+||+||||+||++|++.++
T Consensus 5 kmKa~ELR~~s~eEL~~~L~eLK~EL~~LR~qk~tGql~k~skIk~vRK~IARilTVinekqke~ 69 (124)
T 2go5_5 5 KVKAGELWNKSKDDLTKQLAELKTELGQLRIQKVASSGSKLNRIHDIRKSIARVLTVINAKQRAQ 69 (124)
T ss_dssp CSCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTSCCCSCTHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred CCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 22399987099999999999999999999999996788763799999999999999987999999
No 4
>2zjr_V 50S ribosomal protein L29; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: a.2.2.1 PDB: 1nwx_W* 1nwy_W* 1sm1_W* 1xbp_W* 2aar_W 2d3o_W 2zjp_V* 2zjq_V 1nkw_W 3cf5_V* 3dll_V* 1pnu_W 1pny_W 1vor_Y 1vou_Y 1vow_Y 1voy_Y 1vp0_Y
Probab=99.78 E-value=1.2e-19 Score=136.69 Aligned_cols=65 Identities=28% Similarity=0.506 Sum_probs=62.7
Q ss_pred CCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 88899972999999999999999999999999537865469999999999999999999998532
Q gi|254780253|r 2 LKFKDISVMSIDQLTEKLIQLKKDQMSLRFQKASGQIEKPFRMREVSRDIARIKTMMNSRVFKNN 66 (67)
Q Consensus 2 mk~~elr~~s~~eL~~~l~~l~~el~~lrfq~~~gql~np~~ir~~Rk~IARi~Tvl~er~~~~~ 66 (67)
||++|||++|++||.+++.+++++||+|||++++||++|||+|+.+||+||||+||++|+..+..
T Consensus 1 MK~~elr~ls~~eL~~~l~~l~~eLf~LR~q~~tgql~~p~~i~~~Rk~IARi~Tvl~er~~~~~ 65 (67)
T 2zjr_V 1 MKPSEMRNLQATDFAKEIDARKKELMELRFQAAAGQLAQPHRVRQLRREVAQLNTVKAELARKGE 65 (67)
T ss_dssp CCSTTTTTSCHHHHHHHHHTHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHHTTTTT
T ss_pred CCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 98898875899999999999999999999999877887718999999999999999999998663
No 5
>2zkr_v 60S ribosomal protein L35; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=99.76 E-value=1.5e-18 Score=130.10 Aligned_cols=65 Identities=29% Similarity=0.388 Sum_probs=61.8
Q ss_pred CCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98889997299999999999999999999999953786-546999999999999999999999853
Q gi|254780253|r 1 MLKFKDISVMSIDQLTEKLIQLKKDQMSLRFQKASGQI-EKPFRMREVSRDIARIKTMMNSRVFKN 65 (67)
Q Consensus 1 mmk~~elr~~s~~eL~~~l~~l~~el~~lrfq~~~gql-~np~~ir~~Rk~IARi~Tvl~er~~~~ 65 (67)
.||++|||++|.+||.+.|.||+.|||+||||+++|++ +|||+|+.+||+||||+||++|+..++
T Consensus 3 k~Ka~ELR~~s~eEL~~~L~eLK~EL~~LR~qk~tg~~~~k~skIr~vRK~IARilTVinekqke~ 68 (123)
T 2zkr_v 3 KIKARDLRGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTVINQTQKEN 68 (123)
T ss_dssp -CCHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHHHC----
T ss_pred CCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 677899860999999999999999999999999975765554499999999999999985999999
No 6
>3bbo_Z Ribosomal protein L29; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Arabidopsis thaliana}
Probab=99.75 E-value=9.9e-19 Score=131.19 Aligned_cols=65 Identities=28% Similarity=0.432 Sum_probs=62.1
Q ss_pred CCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 88899972999999999999999999999999537865469999999999999999999998532
Q gi|254780253|r 2 LKFKDISVMSIDQLTEKLIQLKKDQMSLRFQKASGQIEKPFRMREVSRDIARIKTMMNSRVFKNN 66 (67)
Q Consensus 2 mk~~elr~~s~~eL~~~l~~l~~el~~lrfq~~~gql~np~~ir~~Rk~IARi~Tvl~er~~~~~ 66 (67)
++.+|||+||++||.++|.++++|||+|||++++||++|||+|+.+||+||||+||++|++.+++
T Consensus 65 ~klKELR~lS~eEL~~~L~elK~ELf~LRfqkatgqlenp~~Ik~~RK~IARilTVi~EReleeg 129 (173)
T 3bbo_Z 65 AELKEIRSKTTEQLQEEVVDLKGELFMLRLQKSARNEFKSSDFRRMKKQVARMLTVKREREIKEG 129 (173)
T ss_dssp SCHHHHHHSCHHHHHHHHHHHTTHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHSCC---
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 26999980899999999999999999999999867876438999999999999999999999986
No 7
>3ofq_Y 50S ribosomal protein L29; protein biosynthesis, ribosomes, RNA, tRNA, transfer, antibi EXIT, peptidyl, ribosomal subunit, large; 3.10A {Escherichia coli} PDB: 1p85_W 1p86_W 1vs8_X 1vs6_X 2aw4_X 2awb_X 1vt2_Y 2i2v_Y 2j28_X 2i2t_Y* 2qao_X* 2qba_X* 2qbc_X* 2qbe_X 2qbg_X 2qbi_X* 2qbk_X* 2qov_X 2qox_X 2qoz_X* ...
Probab=99.72 E-value=6.7e-20 Score=138.17 Aligned_cols=62 Identities=35% Similarity=0.650 Sum_probs=60.4
Q ss_pred CCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 88899972999999999999999999999999537865469999999999999999999998
Q gi|254780253|r 2 LKFKDISVMSIDQLTEKLIQLKKDQMSLRFQKASGQIEKPFRMREVSRDIARIKTMMNSRVF 63 (67)
Q Consensus 2 mk~~elr~~s~~eL~~~l~~l~~el~~lrfq~~~gql~np~~ir~~Rk~IARi~Tvl~er~~ 63 (67)
||++|||++|++||.+.|.+++++||+||||+++||++|||+|+.+||+||||+||++|+..
T Consensus 1 Mk~~elR~~s~~eL~~~l~~l~~el~~LRfq~~~gql~n~~~i~~~rk~IARi~Tvl~ek~~ 62 (63)
T 3ofq_Y 1 MKAKELREKSVEELNTELLNLLREQFNLRMQAASGQLQQSHLLKQVRRDVARVKTLLNEKAG 62 (63)
T ss_dssp CCSSSSSSCHHHHHHHHTTTSSHHHHTGGGHHHHTCCCCTHHHHTTTTTHHHHHHHHHTTSC
T ss_pred CCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 98798772899999999999999999999999878987648999999999999999998854
No 8
>3jyw_X 60S ribosomal protein L35; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=99.71 E-value=1e-18 Score=131.18 Aligned_cols=63 Identities=27% Similarity=0.347 Sum_probs=60.3
Q ss_pred CCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98889997299999999999999999999999953786546999999999999999999999853
Q gi|254780253|r 1 MLKFKDISVMSIDQLTEKLIQLKKDQMSLRFQKASGQIEKPFRMREVSRDIARIKTMMNSRVFKN 65 (67)
Q Consensus 1 mmk~~elr~~s~~eL~~~l~~l~~el~~lrfq~~~gql~np~~ir~~Rk~IARi~Tvl~er~~~~ 65 (67)
+||++|||+||.+||.++|.++++|||+||||+++|| |||+|+.+||+||||+|||+|..-..
T Consensus 2 ~MKa~ELR~lS~eEL~~~L~eLkkELf~LRfq~atgq--n~~~Ir~iRKdIARIkTVLnE~~~~~ 64 (86)
T 3jyw_X 2 GVKAYELRTKSKEQLASQLVDLKKELAELKVQKLSRP--SLPKIKTVRKSIACVLTVINEQQAAA 64 (86)
T ss_dssp CSCHHHHHTSCHHHHHHHHHHHTTTHHHHHHHHHTCC--CHHHHTCCSTTTHHHHTTTTHHHHHH
T ss_pred CCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHCHHHHC
T ss_conf 9777998709999999999999999999999998789--90799999999999999990101210
No 9
>2wwb_N 60S ribosomal protein L35; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Triticum aestivum} PDB: 1s1i_X 2wwa_N 2ww9_N
Probab=99.69 E-value=7.6e-18 Score=125.90 Aligned_cols=62 Identities=27% Similarity=0.375 Sum_probs=60.1
Q ss_pred CCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8889997299999999999999999999999953786546999999999999999999999853
Q gi|254780253|r 2 LKFKDISVMSIDQLTEKLIQLKKDQMSLRFQKASGQIEKPFRMREVSRDIARIKTMMNSRVFKN 65 (67)
Q Consensus 2 mk~~elr~~s~~eL~~~l~~l~~el~~lrfq~~~gql~np~~ir~~Rk~IARi~Tvl~er~~~~ 65 (67)
||+.|||++|.+||.++|.+++.|||+||||+++|+ +||+|+.+||+||||+||++|++.++
T Consensus 4 mKa~ELR~ks~eEL~~~L~eLK~EL~~LR~qk~TG~--~~skIk~vRK~IARvlTVinqkqke~ 65 (120)
T 2wwb_N 4 VKAYELRTKSKEQLASQLVDLKKELAELKVQKLSRP--SLPKIKTVRKSIACVLTVINEQQREA 65 (120)
T ss_dssp CSSHHHHTCCSHHHHHHHHHHHHHHHHTCSSCCCSC--CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 878999719999999999999999999899999788--80789999999999999984999999
No 10
>2j01_2 50S ribosomal protein L29; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} SCOP: a.2.2.1 PDB: 1vsp_W 1vsa_W 2j03_2 2jl6_2 2jl8_2 2v47_2 2v49_2 2wdi_2 2wdj_2 2wdl_2 2wdn_2 2wh2_2 2wh4_2 2wrj_2 2wrl_2 2wro_2 2wrr_2 2x9s_2 2x9u_2 2xg0_2 ...
Probab=99.62 E-value=2.5e-19 Score=134.71 Aligned_cols=65 Identities=28% Similarity=0.469 Sum_probs=62.6
Q ss_pred CCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98889997299999999999999999999999953786546999999999999999999999853
Q gi|254780253|r 1 MLKFKDISVMSIDQLTEKLIQLKKDQMSLRFQKASGQIEKPFRMREVSRDIARIKTMMNSRVFKN 65 (67)
Q Consensus 1 mmk~~elr~~s~~eL~~~l~~l~~el~~lrfq~~~gql~np~~ir~~Rk~IARi~Tvl~er~~~~ 65 (67)
+|+++|||++|++||.+++.+++++||+||||+++||++|||+|+.+||+||||+||++|+..++
T Consensus 7 ~~k~~eir~ls~~eL~~~l~elk~elf~lRfq~~~gql~n~~~i~~~Rk~IARi~Tvl~ek~~~~ 71 (72)
T 2j01_2 7 RKQLEEARKLSPVELEKLVREKKRELMELRFQASIGQLSQNHKIRDLKRQIARLLTVLNEKRRQN 71 (72)
T ss_dssp -----CCTTTHHHHHHHHHHHHHHHSSSSCCTTSSTTTGGGTTSSSSSCCCCCCC----------
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 87699998399999999999999999999999987788762899999999999999999987654
No 11
>1xwy_A DNAse TATD, deoxyribonuclease TATD; TIM barrael, zinc ION, structural genomics, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.1.9.12
Probab=28.61 E-value=16 Score=16.75 Aligned_cols=28 Identities=11% Similarity=-0.022 Sum_probs=21.6
Q ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8999729999999999999999999999
Q gi|254780253|r 4 FKDISVMSIDQLTEKLIQLKKDQMSLRF 31 (67)
Q Consensus 4 ~~elr~~s~~eL~~~l~~l~~el~~lrf 31 (67)
..+++.+|.+++...+.+.-..+|.+.|
T Consensus 237 iA~l~~~~~e~l~~~~~~N~~~lF~l~~ 264 (264)
T 1xwy_A 237 IAHWRGEDAAWLAATTDANVKTLFGIAF 264 (264)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHCCCC
T ss_conf 9988498999999999999999848899
No 12
>1a62_A RHO; transcription termination, termination, RNA binding domain, transcription regulation, OB fold, F1-ATPase; 1.55A {Escherichia coli BL21} SCOP: a.140.3.1 b.40.4.5 PDB: 1a63_A 2a8v_A 1a8v_A
Probab=22.61 E-value=38 Score=14.44 Aligned_cols=21 Identities=5% Similarity=0.189 Sum_probs=17.6
Q ss_pred CCHHHHHHCCHHHHHHHHHHH
Q ss_conf 888999729999999999999
Q gi|254780253|r 2 LKFKDISVMSIDQLTEKLIQL 22 (67)
Q Consensus 2 mk~~elr~~s~~eL~~~l~~l 22 (67)
|...||.+|+..||.+.-.++
T Consensus 1 mni~eL~~~~l~EL~eiAk~l 21 (130)
T 1a62_A 1 MNLTELKNTPVSELITLGENM 21 (130)
T ss_dssp CBHHHHHTSCHHHHHHHHHTT
T ss_pred CCHHHHHCCCHHHHHHHHHHC
T ss_conf 987998169999999999985
No 13
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=22.39 E-value=28 Score=15.21 Aligned_cols=23 Identities=22% Similarity=0.378 Sum_probs=17.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 54699999999999999999999
Q gi|254780253|r 39 EKPFRMREVSRDIARIKTMMNSR 61 (67)
Q Consensus 39 ~np~~ir~~Rk~IARi~Tvl~er 61 (67)
+..|++-.+--.|||++-.+.||
T Consensus 11 E~~SK~YH~~NEiAR~~KL~GER 33 (33)
T 2wq1_A 11 ENTSKIYHNTNEIARNTKLVGER 33 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99999998778999999986479
Done!