Query gi|254780253|ref|YP_003064666.1| ribosomal protein L29 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 67
No_of_seqs 100 out of 1117
Neff 5.8
Searched_HMMs 13730
Date Tue May 24 06:22:13 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780253.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1vqov1 a.2.2.1 (V:1-65) Ribos 99.8 1.4E-19 1E-23 134.8 9.5 62 1-62 2-64 (65)
2 d1r73a_ a.2.2.1 (A:) Ribosomal 99.8 9.6E-20 7E-24 135.8 8.6 65 2-66 1-65 (66)
3 d2zjrv1 a.2.2.1 (V:1-66) Ribos 99.8 4.8E-20 3.5E-24 137.6 6.2 64 2-65 1-64 (66)
4 d2gycw1 a.2.2.1 (W:1-60) Ribos 99.8 9.7E-20 7.1E-24 135.8 5.0 60 2-61 1-60 (60)
5 d2j0121 a.2.2.1 (2:12-62) Ribo 99.3 3.9E-16 2.8E-20 114.3 -10.4 51 6-56 1-51 (51)
6 d1a62a1 a.140.3.1 (A:1-47) Rho 36.1 9.3 0.00067 16.7 2.1 21 2-22 1-21 (47)
7 d1tf5a3 c.37.1.19 (A:1-226,A:3 29.4 17 0.0012 15.1 3.4 23 5-27 31-53 (273)
8 d1nkta3 c.37.1.19 (A:-15-225,A 25.1 20 0.0015 14.7 3.5 23 5-27 45-67 (288)
9 d1xwya1 c.1.9.12 (A:1-260) Deo 23.0 16 0.0012 15.2 1.5 28 4-31 233-260 (260)
10 d2odgc1 a.140.1.1 (C:2-47) Inn 12.9 39 0.0028 13.0 1.7 16 6-21 2-17 (46)
No 1
>d1vqov1 a.2.2.1 (V:1-65) Ribosomal protein L29 (L29p) {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=99.79 E-value=1.4e-19 Score=134.84 Aligned_cols=62 Identities=32% Similarity=0.457 Sum_probs=60.5
Q ss_pred CCCHHHHHHCCHHHHHHHHHHHHHHHHHHH-HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 988899972999999999999999999999-99953786546999999999999999999999
Q gi|254780253|r 1 MLKFKDISVMSIDQLTEKLIQLKKDQMSLR-FQKASGQIEKPFRMREVSRDIARIKTMMNSRV 62 (67)
Q Consensus 1 mmk~~elr~~s~~eL~~~l~~l~~el~~lr-fq~~~gql~np~~ir~~Rk~IARi~Tvl~er~ 62 (67)
|||++|||+||.+||.+++.++++|||+|| ||+++||++|||+|+.+||+||||+||++|+.
T Consensus 2 ~mK~~elr~ls~~eL~~~l~elk~El~~LR~~q~~~gql~~~~~ik~~Rk~IARi~Tvl~ek~ 64 (65)
T d1vqov1 2 VLHVQEIRDMTPAEREAELDDLKTELLNARAVQAAGGAPENPGRIKELRKAIARIKTIQGEEG 64 (65)
T ss_dssp CSCHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 747899986899999999999999999999999980887761899999999999999998726
No 2
>d1r73a_ a.2.2.1 (A:) Ribosomal protein L29 (L29p) {Thermotoga maritima [TaxId: 2336]}
Probab=99.79 E-value=9.6e-20 Score=135.82 Aligned_cols=65 Identities=32% Similarity=0.455 Sum_probs=62.6
Q ss_pred CCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 88899972999999999999999999999999537865469999999999999999999998532
Q gi|254780253|r 2 LKFKDISVMSIDQLTEKLIQLKKDQMSLRFQKASGQIEKPFRMREVSRDIARIKTMMNSRVFKNN 66 (67)
Q Consensus 2 mk~~elr~~s~~eL~~~l~~l~~el~~lrfq~~~gql~np~~ir~~Rk~IARi~Tvl~er~~~~~ 66 (67)
||++|||++|++||.+.+.+++++||+||||+++||++|||+|+.+||+||||+||++|++...+
T Consensus 1 MK~~elr~ls~~eL~~~l~~l~~el~~LRfq~~~gql~~~~~i~~~Rk~IARi~Tvl~er~~~~~ 65 (66)
T d1r73a_ 1 MKASELRNYTDEELKNLLEEKKRQLMELRFQLAMGQLKNTSLIKLTKRDIARIKTILRERELGIR 65 (66)
T ss_dssp CCCSHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 98798873899999999999999999999999877887718999989999999999999986657
No 3
>d2zjrv1 a.2.2.1 (V:1-66) Ribosomal protein L29 (L29p) {Deinococcus radiodurans [TaxId: 1299]}
Probab=99.79 E-value=4.8e-20 Score=137.60 Aligned_cols=64 Identities=28% Similarity=0.509 Sum_probs=62.1
Q ss_pred CCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8889997299999999999999999999999953786546999999999999999999999853
Q gi|254780253|r 2 LKFKDISVMSIDQLTEKLIQLKKDQMSLRFQKASGQIEKPFRMREVSRDIARIKTMMNSRVFKN 65 (67)
Q Consensus 2 mk~~elr~~s~~eL~~~l~~l~~el~~lrfq~~~gql~np~~ir~~Rk~IARi~Tvl~er~~~~ 65 (67)
||++|||++|++||.++|.+++++||+||||+++||++|||+|+.+||+||||+||++|+....
T Consensus 1 MK~~elr~~s~~eL~~~l~~lk~elf~LRfq~~tgql~n~~~ik~~Rk~IARi~Tvl~er~~~~ 64 (66)
T d2zjrv1 1 MKPSEMRNLQATDFAKEIDARKKELMELRFQAAAGQLAQPHRVRQLRREVAQLNTVKAELARKG 64 (66)
T ss_dssp CCSTTTTTSCHHHHHHHHHTHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred CCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9889887489999999999999999999999987787662899999999999999999999760
No 4
>d2gycw1 a.2.2.1 (W:1-60) Ribosomal protein L29 (L29p) {Escherichia coli [TaxId: 562]}
Probab=99.77 E-value=9.7e-20 Score=135.78 Aligned_cols=60 Identities=37% Similarity=0.700 Sum_probs=59.1
Q ss_pred CCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 888999729999999999999999999999995378654699999999999999999999
Q gi|254780253|r 2 LKFKDISVMSIDQLTEKLIQLKKDQMSLRFQKASGQIEKPFRMREVSRDIARIKTMMNSR 61 (67)
Q Consensus 2 mk~~elr~~s~~eL~~~l~~l~~el~~lrfq~~~gql~np~~ir~~Rk~IARi~Tvl~er 61 (67)
||++|||++|++||.+++.+++++||+||||+++||++|||+|+.+||+||||+||++|+
T Consensus 1 Mk~~elr~ls~~eL~~~l~~l~~el~~lRfq~~~gql~~~~~i~~~Rk~IARi~Tvl~ek 60 (60)
T d2gycw1 1 MKAKELREKSVEELNTELLNLLREQFNLRMQAASGQLQQSHLLKQVRRDVARVKTLLNEK 60 (60)
T ss_dssp CCHHHHHHSCHHHHHHHHHHHHHHHHHCCCSTTTCSSCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf 987988738999999999999999999999998778776389999999999999999629
No 5
>d2j0121 a.2.2.1 (2:12-62) Ribosomal protein L29 (L29p) {Thermus thermophilus [TaxId: 274]}
Probab=99.34 E-value=3.9e-16 Score=114.32 Aligned_cols=51 Identities=31% Similarity=0.518 Sum_probs=49.9
Q ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 997299999999999999999999999953786546999999999999999
Q gi|254780253|r 6 DISVMSIDQLTEKLIQLKKDQMSLRFQKASGQIEKPFRMREVSRDIARIKT 56 (67)
Q Consensus 6 elr~~s~~eL~~~l~~l~~el~~lrfq~~~gql~np~~ir~~Rk~IARi~T 56 (67)
|||+||++||.+++.+++++||+||||+++||++|||+|+.+||+||||+|
T Consensus 1 EiR~ls~~eL~~~l~elk~el~~LRfq~atgql~n~~~ik~~rk~IARi~T 51 (51)
T d2j0121 1 EARKLSPVELEKLVREKKRELMELRFQASIGQLSQNHKIRDLKRQIARLLT 51 (51)
T ss_dssp CCTTTHHHHHHHHHHHHHHHSSSSCCTTSSTTTGGGTTSSSSSCCCCCCC-
T ss_pred CHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCC
T ss_conf 936579999999999999999999999987887664899999999887357
No 6
>d1a62a1 a.140.3.1 (A:1-47) Rho termination factor, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=36.09 E-value=9.3 Score=16.69 Aligned_cols=21 Identities=5% Similarity=0.189 Sum_probs=17.7
Q ss_pred CCHHHHHHCCHHHHHHHHHHH
Q ss_conf 888999729999999999999
Q gi|254780253|r 2 LKFKDISVMSIDQLTEKLIQL 22 (67)
Q Consensus 2 mk~~elr~~s~~eL~~~l~~l 22 (67)
|..+||+.++..||.+.-.++
T Consensus 1 M~lseLk~k~~~EL~~iA~~l 21 (47)
T d1a62a1 1 MNLTELKNTPVSELITLGENM 21 (47)
T ss_dssp CBHHHHHTSCHHHHHHHHHTT
T ss_pred CCHHHHHCCCHHHHHHHHHHC
T ss_conf 988988159999999999994
No 7
>d1tf5a3 c.37.1.19 (A:1-226,A:349-395) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]}
Probab=29.44 E-value=17 Score=15.13 Aligned_cols=23 Identities=30% Similarity=0.309 Sum_probs=19.7
Q ss_pred HHHHHCCHHHHHHHHHHHHHHHH
Q ss_conf 99972999999999999999999
Q gi|254780253|r 5 KDISVMSIDQLTEKLIQLKKDQM 27 (67)
Q Consensus 5 ~elr~~s~~eL~~~l~~l~~el~ 27 (67)
.++.++|++||..+..+++..+.
T Consensus 31 ~el~~LSDeEL~~kt~~lK~rl~ 53 (273)
T d1tf5a3 31 GDYENLSDDALKHKTIEFKERLE 53 (273)
T ss_dssp HHHHTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHHH
T ss_conf 99983899999999999999997
No 8
>d1nkta3 c.37.1.19 (A:-15-225,A:350-396) Translocation ATPase SecA, nucleotide-binding domains {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=25.06 E-value=20 Score=14.66 Aligned_cols=23 Identities=17% Similarity=0.257 Sum_probs=20.0
Q ss_pred HHHHHCCHHHHHHHHHHHHHHHH
Q ss_conf 99972999999999999999999
Q gi|254780253|r 5 KDISVMSIDQLTEKLIQLKKDQM 27 (67)
Q Consensus 5 ~elr~~s~~eL~~~l~~l~~el~ 27 (67)
.++..+|++||..+..+++..+.
T Consensus 45 ~el~~LSDeEL~~kT~eLK~rla 67 (288)
T d1nkta3 45 DDVEKLTDAELRAKTDEFKRRLA 67 (288)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHHH
T ss_conf 99881899999998999999876
No 9
>d1xwya1 c.1.9.12 (A:1-260) Deoxyribonuclease TatD (MttC) {Escherichia coli [TaxId: 562]}
Probab=22.96 E-value=16 Score=15.20 Aligned_cols=28 Identities=11% Similarity=-0.022 Sum_probs=18.8
Q ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8999729999999999999999999999
Q gi|254780253|r 4 FKDISVMSIDQLTEKLIQLKKDQMSLRF 31 (67)
Q Consensus 4 ~~elr~~s~~eL~~~l~~l~~el~~lrf 31 (67)
..+++.+|.+++.+.+.+.-..+|++.|
T Consensus 233 lA~~~g~~~~ev~~~~~~N~~~~f~l~f 260 (260)
T d1xwya1 233 IAHWRGEDAAWLAATTDANVKTLFGIAF 260 (260)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHCCCC
T ss_conf 9988695999999999999999858889
No 10
>d2odgc1 a.140.1.1 (C:2-47) Inner nuclear membrane protein emerin {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.89 E-value=39 Score=12.96 Aligned_cols=16 Identities=25% Similarity=0.210 Sum_probs=12.5
Q ss_pred HHHHCCHHHHHHHHHH
Q ss_conf 9972999999999999
Q gi|254780253|r 6 DISVMSIDQLTEKLIQ 21 (67)
Q Consensus 6 elr~~s~~eL~~~l~~ 21 (67)
+++.||++||.+.|.+
T Consensus 2 ~y~~lSd~El~~lL~~ 17 (46)
T d2odgc1 2 NYADLSDTELTTLLRR 17 (46)
T ss_dssp GGGGSCHHHHHHHHHH
T ss_pred CHHHHCHHHHHHHHHH
T ss_conf 2656068999999999
Done!