RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780253|ref|YP_003064666.1| ribosomal protein L29 [Candidatus Liberibacter asiaticus str. psy62] (67 letters) >gnl|CDD|178971 PRK00306, PRK00306, 50S ribosomal protein L29; Reviewed. Length = 66 Score = 65.6 bits (161), Expect = 3e-12 Identities = 32/59 (54%), Positives = 47/59 (79%) Query: 3 KFKDISVMSIDQLTEKLIQLKKDQMSLRFQKASGQIEKPFRMREVSRDIARIKTMMNSR 61 K K++ +S+++L EKL++LKK+ +LRFQKA+GQ+E R+REV RDIARIKT++ R Sbjct: 2 KAKELRELSVEELNEKLLELKKELFNLRFQKATGQLENTHRLREVRRDIARIKTVLRER 60 >gnl|CDD|129124 TIGR00012, L29, ribosomal protein L29. called L29 in prokaryotic (50S) large subunits and L35 in eukaryotic (60S) large subunits. Length = 55 Score = 53.8 bits (130), Expect = 1e-08 Identities = 26/55 (47%), Positives = 40/55 (72%) Query: 6 DISVMSIDQLTEKLIQLKKDQMSLRFQKASGQIEKPFRMREVSRDIARIKTMMNS 60 ++ S ++L +KL +LKK+ LRFQKA+GQ+ KP R+R+V RDIAR+ T++ Sbjct: 1 ELREKSKEELAKKLDELKKELFELRFQKATGQLAKPHRIRQVRRDIARLLTVLRE 55 >gnl|CDD|179037 PRK00461, rpmC, 50S ribosomal protein L29; Reviewed. Length = 87 Score = 48.6 bits (116), Expect = 3e-07 Identities = 21/59 (35%), Positives = 43/59 (72%) Query: 3 KFKDISVMSIDQLTEKLIQLKKDQMSLRFQKASGQIEKPFRMREVSRDIARIKTMMNSR 61 FK++ S+++L + +I+LK + +LRF+ A+G +++ +++E+ +DIARI T++N R Sbjct: 1 LFKELRKKSVEELEKLVIELKAELFTLRFKNATGSLDQTHKIKEIRKDIARILTILNER 59 >gnl|CDD|184737 PRK14549, PRK14549, 50S ribosomal protein L29P; Provisional. Length = 69 Score = 46.5 bits (111), Expect = 1e-06 Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 1/59 (1%) Query: 2 LKFKDISVMSIDQLTEKLIQLKKDQMSLRFQKASG-QIEKPFRMREVSRDIARIKTMMN 59 L+ +I MS ++ EKL +LK + + R Q A G E P R+RE+ R IARI T+ Sbjct: 4 LRASEIREMSPEEREEKLEELKLELLKERAQAAMGGAPENPGRIREIRRTIARILTIQR 62 >gnl|CDD|177359 PHA02310, PHA02310, hypothetical protein. Length = 130 Score = 26.0 bits (57), Expect = 2.0 Identities = 14/42 (33%), Positives = 22/42 (52%) Query: 26 QMSLRFQKASGQIEKPFRMREVSRDIARIKTMMNSRVFKNNS 67 Q +L FQ+ I F M ++ RD+A + + RVF+ S Sbjct: 61 QFNLEFQRNYVMIFANFEMVDLDRDMAGDQFIWTGRVFQLES 102 >gnl|CDD|183875 PRK13168, rumA, 23S rRNA m(5)U1939 methyltransferase; Reviewed. Length = 443 Score = 25.5 bits (57), Expect = 3.4 Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 1/30 (3%) Query: 27 MSLRFQKASGQIEKPFRMREVSRDIARIKT 56 +S+R+ GQ+ FR + S DI I Sbjct: 139 LSVRYVPKKGQLLVGFREKN-SSDIVDIDQ 167 >gnl|CDD|184052 PRK13435, PRK13435, response regulator; Provisional. Length = 145 Score = 24.6 bits (54), Expect = 6.0 Identities = 9/28 (32%), Positives = 14/28 (50%) Query: 30 RFQKASGQIEKPFRMREVSRDIARIKTM 57 F A G I KP+ R V+R ++ + Sbjct: 94 DFAGALGVIAKPYSPRGVARALSYLSAR 121 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.322 0.132 0.338 Gapped Lambda K H 0.267 0.0753 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 985,443 Number of extensions: 45834 Number of successful extensions: 157 Number of sequences better than 10.0: 1 Number of HSP's gapped: 156 Number of HSP's successfully gapped: 24 Length of query: 67 Length of database: 5,994,473 Length adjustment: 38 Effective length of query: 29 Effective length of database: 5,173,369 Effective search space: 150027701 Effective search space used: 150027701 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 50 (23.0 bits)