RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780253|ref|YP_003064666.1| ribosomal protein L29
[Candidatus Liberibacter asiaticus str. psy62]
         (67 letters)



>d1r73a_ a.2.2.1 (A:) Ribosomal protein L29 (L29p) {Thermotoga
          maritima [TaxId: 2336]}
          Length = 66

 Score = 61.9 bits (151), Expect = 1e-11
 Identities = 21/59 (35%), Positives = 34/59 (57%)

Query: 3  KFKDISVMSIDQLTEKLIQLKKDQMSLRFQKASGQIEKPFRMREVSRDIARIKTMMNSR 61
          K  ++   + ++L   L + K+  M LRFQ A GQ++    ++   RDIARIKT++  R
Sbjct: 2  KASELRNYTDEELKNLLEEKKRQLMELRFQLAMGQLKNTSLIKLTKRDIARIKTILRER 60


>d2gycw1 a.2.2.1 (W:1-60) Ribosomal protein L29 (L29p)
          {Escherichia coli [TaxId: 562]}
          Length = 60

 Score = 61.5 bits (150), Expect = 2e-11
 Identities = 22/59 (37%), Positives = 43/59 (72%)

Query: 3  KFKDISVMSIDQLTEKLIQLKKDQMSLRFQKASGQIEKPFRMREVSRDIARIKTMMNSR 61
          K K++   S+++L  +L+ L ++Q +LR Q ASGQ+++   +++V RD+AR+KT++N +
Sbjct: 2  KAKELREKSVEELNTELLNLLREQFNLRMQAASGQLQQSHLLKQVRRDVARVKTLLNEK 60


>d1vqov1 a.2.2.1 (V:1-65) Ribosomal protein L29 (L29p) {Archaeon
          Haloarcula marismortui [TaxId: 2238]}
          Length = 65

 Score = 60.0 bits (146), Expect = 6e-11
 Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 1/62 (1%)

Query: 1  MLKFKDISVMSIDQLTEKLIQLKKDQMSLR-FQKASGQIEKPFRMREVSRDIARIKTMMN 59
          +L  ++I  M+  +   +L  LK + ++ R  Q A G  E P R++E+ + IARIKT+  
Sbjct: 2  VLHVQEIRDMTPAEREAELDDLKTELLNARAVQAAGGAPENPGRIKELRKAIARIKTIQG 61

Query: 60 SR 61
            
Sbjct: 62 EE 63


>d2zjrv1 a.2.2.1 (V:1-66) Ribosomal protein L29 (L29p)
          {Deinococcus radiodurans [TaxId: 1299]}
          Length = 66

 Score = 59.6 bits (145), Expect = 6e-11
 Identities = 17/60 (28%), Positives = 36/60 (60%)

Query: 2  LKFKDISVMSIDQLTEKLIQLKKDQMSLRFQKASGQIEKPFRMREVSRDIARIKTMMNSR 61
          +K  ++  +      +++   KK+ M LRFQ A+GQ+ +P R+R++ R++A++ T+    
Sbjct: 1  MKPSEMRNLQATDFAKEIDARKKELMELRFQAAAGQLAQPHRVRQLRREVAQLNTVKAEL 60


>d2j0121 a.2.2.1 (2:12-62) Ribosomal protein L29 (L29p) {Thermus
          thermophilus [TaxId: 274]}
          Length = 51

 Score = 59.2 bits (144), Expect = 9e-11
 Identities = 16/51 (31%), Positives = 32/51 (62%)

Query: 6  DISVMSIDQLTEKLIQLKKDQMSLRFQKASGQIEKPFRMREVSRDIARIKT 56
          +   +S  +L + + + K++ M LRFQ + GQ+ +  ++R++ R IAR+ T
Sbjct: 1  EARKLSPVELEKLVREKKRELMELRFQASIGQLSQNHKIRDLKRQIARLLT 51


>d1d2da_ a.16.1.3 (A:) Multifunctional Glu-Pro-tRNA synthase
          (EPRS) second repeated element {Chinese hamster
          (Cricetulus griseus) [TaxId: 10029]}
          Length = 56

 Score = 22.7 bits (49), Expect = 9.2
 Identities = 8/40 (20%), Positives = 18/40 (45%), Gaps = 5/40 (12%)

Query: 2  LKFKDISVMSIDQLTEKLIQLKKDQMSLRFQKASGQIEKP 41
          LK +      + +  E L+ LK +     +++ +G+   P
Sbjct: 16 LKAEKAPKAKVTEAVECLLSLKAE-----YKEKTGKEYVP 50


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.132    0.338 

Gapped
Lambda     K      H
   0.267   0.0728    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 215,754
Number of extensions: 7670
Number of successful extensions: 64
Number of sequences better than 10.0: 1
Number of HSP's gapped: 63
Number of HSP's successfully gapped: 27
Length of query: 67
Length of database: 2,407,596
Length adjustment: 36
Effective length of query: 31
Effective length of database: 1,913,316
Effective search space: 59312796
Effective search space used: 59312796
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (21.9 bits)