Query         gi|254780254|ref|YP_003064667.1| 50S ribosomal protein L16 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 138
No_of_seqs    112 out of 1127
Neff          5.2 
Searched_HMMs 33803
Date          Tue May 24 08:03:02 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780254.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >2zjr_J 50S ribosomal protein  100.0       0       0  331.2   6.5  138    1-138     1-138 (142)
  2 >3bbo_O Ribosomal protein L16; 100.0       0       0  313.6   8.9  134    2-135     1-134 (135)
  3 >3i1n_M 50S ribosomal protein  100.0       0       0  304.7  12.6  135    2-137     1-135 (136)
  4 >2ftc_I Mitochondrial ribosoma 100.0       0       0  294.2  11.1  114   18-131     2-118 (118)
  5 >2zkr_h 60S ribosomal protein  100.0       0       0  287.4  13.9  136    1-136    14-169 (214)
  6 >1vq8_H 50S ribosomal protein  100.0 2.8E-45       0  278.9  13.9  136    2-137    12-168 (171)
  7 >2pa2_A 60S ribosomal protein  100.0 1.8E-41       0  257.3  10.3  120   18-137     4-139 (151)
  8 >1ffk_F Ribosomal protein L10E 100.0   2E-38 5.9E-43  239.9  12.0  131    5-137    12-154 (157)
  9 >1zbr_A AAQ65385, conserved hy  48.9      13 0.00037   18.2   2.4   23   89-111     3-25  (59)
 10 >3hvm_A Agmatine deiminase; hy  46.6      13 0.00039   18.0   2.3   34   89-122     3-43  (67)
 11 >3a7s_A Ubiquitin carboxyl-ter  37.4      25 0.00073   16.5   2.5   22   89-110   160-181 (228)
 12 >3ihr_A Ubiquitin carboxyl-ter  37.3      25 0.00073   16.5   2.5   22   89-110   160-181 (227)
 13 >2yx5_A UPF0062 protein MJ1593  37.3      31 0.00091   15.9   3.2   33   95-127    34-67  (83)
 14 >1xd3_A Ubiquitin carboxyl-ter  36.7      27  0.0008   16.2   2.6   22   89-110   165-186 (230)
 15 >3h7c_X Agmatine deiminase; st  36.5      32 0.00094   15.8   3.3   58   41-112    26-84  (134)
 16 >2q9v_A Membrane-associated gu  35.9      29 0.00087   16.0   2.7   47   89-135    37-88  (90)
 17 >1cmx_A Protein (ubiquitin YUH  35.4      31 0.00092   15.9   2.7   20   91-110   164-183 (236)
 18 >1wi4_A Synip, syntaxin bindin  35.0      26 0.00077   16.3   2.3   46   89-134    51-101 (109)
 19 >3h9i_A Cation efflux system p  34.2      25 0.00073   16.5   2.1   31   96-126    24-54  (123)
 20 >2wdt_A Ubiquitin carboxyl-ter  32.7      37  0.0011   15.5   3.0   22   89-110   160-181 (232)
 21 >1vq3_A Phosphoribosylformylgl  31.7      38  0.0011   15.4   4.7   33   94-126    47-80  (94)
 22 >1u3b_A Amyloid beta A4 precur  30.4      25 0.00074   16.4   1.6   45   89-133    39-88  (90)
 23 >2yt7_A Amyloid beta A4 precur  29.1      38  0.0011   15.4   2.3   45   89-133    47-96  (101)
 24 >2f7l_A 455AA long hypothetica  27.6      45  0.0013   15.0   4.1   97   27-123     2-129 (149)
 25 >1wfv_A Membrane associated gu  26.8      28 0.00083   16.2   1.3   42   89-130    46-92  (103)
 26 >1v5q_A GRIP1 homolog, glutama  26.7      43  0.0013   15.1   2.2   44   89-132    55-103 (122)
 27 >2etl_A Ubiquitin carboxyl-ter  26.3      48  0.0014   14.8   2.6   41   89-129   162-216 (228)
 28 >2vwr_A Ligand of NUMB protein  26.2      20  0.0006   17.0   0.5   42   89-130    39-85  (95)
 29 >1v6b_A Harmonin isoform A1; s  25.9      49  0.0014   14.8   3.5   44   90-133    54-102 (118)
 30 >3e17_A Tight junction protein  25.8      24 0.00072   16.5   0.8   42   89-130    31-77  (88)
 31 >1vf7_A Multidrug resistance p  23.7      54  0.0016   14.5   3.2   19   96-114    23-41  (133)
 32 >2qv6_A MJ0145, GTP cyclohydro  23.1      55  0.0016   14.5   4.8   46   89-134    43-88  (127)
 33 >1ua4_A Glucokinase, ADP-depen  22.6      37  0.0011   15.5   1.3   32   78-109    76-109 (132)
 34 >2zw2_A Putative uncharacteriz  22.4      57  0.0017   14.4   4.9   34   94-127    37-71  (92)
 35 >2gzv_A PRKCA-binding protein;  22.2      28 0.00083   16.1   0.6   41   89-129    60-105 (114)
 36 >1xkn_A Putative peptidyl-argi  22.1      52  0.0015   14.6   2.0   56   41-110    26-81  (117)
 37 >2jer_A Agmatine deiminase; hy  21.6      54  0.0016   14.5   2.0   55   41-109    27-81  (133)
 38 >2rcz_A Tight junction protein  20.8      24 0.00072   16.5   0.0   41   89-129    31-76  (81)
 39 >2db5_A INAD-like protein; PDZ  20.6      31 0.00092   15.9   0.5   42   89-130    64-111 (128)
 40 >2qt5_A Glutamate receptor-int  20.5      39  0.0012   15.3   1.1   44   89-132    48-96  (103)
 41 >2e7k_A Maguk P55 subfamily me  20.3      45  0.0013   15.0   1.3   41   89-129    39-83  (91)

No 1  
>>2zjr_J 50S ribosomal protein L16; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} (J:)
Probab=100.00  E-value=0  Score=331.17  Aligned_cols=138  Identities=53%  Similarity=0.909  Sum_probs=135.9

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCEEECCCEEECHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEEECC
Q ss_conf             99888775510678989723477875312131032740531325999999999999742678468987549860786215
Q gi|254780254|r    1 MLRQPKNTKYPKQFKGRIKGVAKGGSRICFGNFALKAQEANRIGSSEIEAARRAISRGMKRAGRVWICVFPDVPVTAKPT   80 (138)
Q Consensus         1 mml~Pk~~KyrK~~kgr~~g~~~~~~~l~fG~yGL~a~e~g~it~~qiEaaR~~i~R~lkk~gkiwirv~P~~pvTkKp~   80 (138)
                      |||+||+++|+|+|+++++|.+.+++.|.||+|||+|+|+++|+++||||||++|+|+|++.+++|+++|||.|||+||+
T Consensus         1 m~~~Pkr~k~rK~~k~ri~g~~~~~~~l~~g~~gL~a~e~g~i~~~qlEaaR~~i~r~l~k~~~~~i~v~p~~~vt~k~~   80 (142)
T 2zjr_J            1 MMLLPKRTKFRKQFRGRMTGDAKGGDYVAFGDYGLIAMEPAWIKSNQIEACRIVMSRHFRRGGKIYIRIFPDKPVTKKPA   80 (142)
T ss_dssp             -----CCCSSCCCCCCCCCCSCSSCCSSSSSSCEEEECSCBCCBHHHHHHHHHHHHHHCSSCCCCCCCCCCCCEECCCSS
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCEEEHHHCCEEECCCCEECHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEECCC
T ss_conf             99887764314566899877167774620111165855384883999999999999743628569999838964686045


Q ss_pred             CCCCCCCCCCCCEEEEEECCCEEEEEECCCCHHHHHHHHHHHHHHCCCEEEEEEEECC
Q ss_conf             4400144788110699832150899974979999999999985438951799998629
Q gi|254780254|r   81 EVRMGKGKGNVEKWVCRVKPGRILFEIDGVSEEVARRAFRLGAAKLSVVTKFIQRVVE  138 (138)
Q Consensus        81 e~RMGkGKG~~~~wv~~Vk~G~ilfEi~gi~~~~a~~al~~a~~KLP~k~k~i~k~~~  138 (138)
                      |+|||+|||+||||||+|++|+||||++|+++++|++||++|++|||++|+||.++.+
T Consensus        81 ~~rMGkGKG~~~~~va~Vk~G~iifEi~~~~~~~a~~al~~a~~KLP~~~~iv~~~~~  138 (142)
T 2zjr_J           81 ETRMGKGKGAVEYWVSVVKPGRVMFEVAGVTEEQAKEAFRLAGHKLPIQTKMVKREVY  138 (142)
T ss_dssp             SCCCSSSCCTTSEEBCCBCTTEEEECCCSSCSTTTTTHHHHHHHTCSSCEEEECSCCC
T ss_pred             CCCCCCCCCCCCEEEEEECCCEEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEECCCC
T ss_conf             3347789898204899962364899956999999999999876518974799971643


No 2  
>>3bbo_O Ribosomal protein L16; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} (O:)
Probab=100.00  E-value=0  Score=313.60  Aligned_cols=134  Identities=51%  Similarity=0.966  Sum_probs=132.9

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCEEECCCEEECHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEEECCC
Q ss_conf             98887755106789897234778753121310327405313259999999999997426784689875498607862154
Q gi|254780254|r    2 LRQPKNTKYPKQFKGRIKGVAKGGSRICFGNFALKAQEANRIGSSEIEAARRAISRGMKRAGRVWICVFPDVPVTAKPTE   81 (138)
Q Consensus         2 ml~Pk~~KyrK~~kgr~~g~~~~~~~l~fG~yGL~a~e~g~it~~qiEaaR~~i~R~lkk~gkiwirv~P~~pvTkKp~e   81 (138)
                      ||+||+++|+|+|++++.|.++++++|.||+|||+|+|+++|+++|||++|++|+|++++.+++|+++|||+|+|+||+|
T Consensus         1 ml~Pkr~k~~k~~k~ri~g~~~~~~~l~~g~~gL~a~e~g~i~~~~lEaaR~~i~r~l~~~~~~~~~~~p~~~vT~k~~~   80 (135)
T 3bbo_O            1 MLSPKRTRFRKQHRGRMKGISYRGNRICFGRYALQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTVRPAE   80 (135)
T ss_dssp             CCCCCCCCCCCCCCCCCCCTTSCCCCCCSSSEEEEESSCCCCCHHHHHHHHHHHHHTTCSSSCCCCCCCCCSCCCCCCSS
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCEEEECCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEEECCHH
T ss_conf             98887552125458988775778888742326779833773348899999999997401387799983598224744201


Q ss_pred             CCCCCCCCCCCEEEEEECCCEEEEEECCCCHHHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf             400144788110699832150899974979999999999985438951799998
Q gi|254780254|r   82 VRMGKGKGNVEKWVCRVKPGRILFEIDGVSEEVARRAFRLGAAKLSVVTKFIQR  135 (138)
Q Consensus        82 ~RMGkGKG~~~~wv~~Vk~G~ilfEi~gi~~~~a~~al~~a~~KLP~k~k~i~k  135 (138)
                      +|||+|||+|+||||+|++|+||||++++++++|++||++|++|||++|+||.+
T Consensus        81 ~rMG~GKG~~~~~~arVk~G~iifEi~~~~~~~a~~al~~a~~KLp~~~~iv~k  134 (135)
T 3bbo_O           81 TRMGSGKGSPEYWVAVVKPGRILYEISGVAENIARRAVAIAASKMPIRTQFIIS  134 (135)
T ss_dssp             CCSSCCCSCSSCCCCCCCTTCEEEEECSSCTTHHHHHHHHHHHHCSSCEEEECC
T ss_pred             CCCCCCCCCCEEEEEEECCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf             235799988716899864891899965999999999999998728960899964


No 3  
>>3i1n_M 50S ribosomal protein L16; ribosome structure, protein-RNA complex, acetylation, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA- binding, methylation; 3.19A {Escherichia coli k-12} PDB: 1p85_K 1p86_K 1vs8_M 2aw4_M 2awb_M 1vs6_M 2i2v_M 2j28_M 2i2t_M* 2qao_M* 2qba_M* 2qbc_M* 2qbe_M 2qbg_M 2qbi_M* 2qbk_M* 2qov_M 2qox_M 2qoz_M* 2qp1_M* ... (M:)
Probab=100.00  E-value=0  Score=304.73  Aligned_cols=135  Identities=54%  Similarity=0.968  Sum_probs=131.7

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCEEECCCEEECHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEEECCC
Q ss_conf             98887755106789897234778753121310327405313259999999999997426784689875498607862154
Q gi|254780254|r    2 LRQPKNTKYPKQFKGRIKGVAKGGSRICFGNFALKAQEANRIGSSEIEAARRAISRGMKRAGRVWICVFPDVPVTAKPTE   81 (138)
Q Consensus         2 ml~Pk~~KyrK~~kgr~~g~~~~~~~l~fG~yGL~a~e~g~it~~qiEaaR~~i~R~lkk~gkiwirv~P~~pvTkKp~e   81 (138)
                      ||+|++++|+|+|++++.+ .+.+|.|.||+|||+|+|+++|+++||||+|++|+|+|++.|++|++++||.|+|+||+|
T Consensus         1 ml~pk~~k~~k~~~~ki~~-~~~gn~l~~g~~gl~a~e~~~i~~~~lEa~R~~i~r~lk~~~~~~~~~~~~~~vt~k~~~   79 (136)
T 3i1n_M            1 MLQPKRTKFRKMHKGRNRG-LAQGTDVSFGSFGLKAVGRGRLTARQIEAARRAMTRAVKRQGKIWIRVFPDKPITEKPLA   79 (136)
T ss_dssp             CCCCSCCSCSCCCCCCCCS-CCSSCSCCSSSEEEECCSCEEECSHHHHHHHHHHHHHHCSCSCEEECCCCCBCCEECCSS
T ss_pred             CCCCCCCCCCCCCCCCCCC-CCCCCCEECCEEEEEECCCCEECHHHHHHHHHHHHHHCCCCCEEEEEECCCEEEEECCCC
T ss_conf             9888767313566899977-576871100036058885871679999999999997434486599985286889933145


Q ss_pred             CCCCCCCCCCCEEEEEECCCEEEEEECCCCHHHHHHHHHHHHHHCCCEEEEEEEEC
Q ss_conf             40014478811069983215089997497999999999998543895179999862
Q gi|254780254|r   82 VRMGKGKGNVEKWVCRVKPGRILFEIDGVSEEVARRAFRLGAAKLSVVTKFIQRVV  137 (138)
Q Consensus        82 ~RMGkGKG~~~~wv~~Vk~G~ilfEi~gi~~~~a~~al~~a~~KLP~k~k~i~k~~  137 (138)
                      +|||+|||+++||||+|++|+||||++++++++|++||++|++|||++|+||.+++
T Consensus        80 ~rMG~GkG~~~~~~arV~~G~iifei~~~~~~~a~~al~~a~~KLP~~~~iv~~~~  135 (136)
T 3i1n_M           80 VRMGKGKGNVEYWVALIQPGKVLYEMDGVPEELAREAFKLAAAKLPIKTTFVTKTV  135 (136)
T ss_dssp             CCSCSSCCEECCCBEEECTTCEEEEECSSCHHHHHHHHHHHHHHCSSCCEEEECCC
T ss_pred             CCCCCCCCCCCEEEEEECCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEEEC
T ss_conf             60368978871689997589489996698999999999999871898779998625


No 4  
>>2ftc_I Mitochondrial ribosomal protein L16, 39S ribosomal protein L13, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal RNA; 12.10A {Bos taurus} PDB: 3iy9_I (I:)
Probab=100.00  E-value=0  Score=294.19  Aligned_cols=114  Identities=32%  Similarity=0.478  Sum_probs=110.4

Q ss_pred             CCCCCCCCCCCCHHHCCEEECCCEEECHHHHHHHHHHHHHHC--CCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCEEE
Q ss_conf             723477875312131032740531325999999999999742--678468987549860786215440014478811069
Q gi|254780254|r   18 IKGVAKGGSRICFGNFALKAQEANRIGSSEIEAARRAISRGM--KRAGRVWICVFPDVPVTAKPTEVRMGKGKGNVEKWV   95 (138)
Q Consensus        18 ~~g~~~~~~~l~fG~yGL~a~e~g~it~~qiEaaR~~i~R~l--kk~gkiwirv~P~~pvTkKp~e~RMGkGKG~~~~wv   95 (138)
                      ++|.++++|+|+||+|||+|+|+++|+++|||+||++|+|+|  ++++++|||+|||+|||+||+|+|||+|||++||||
T Consensus         2 ~rG~~~~~~~l~~G~yGL~a~e~g~i~~~qiEaaR~~i~R~l~~k~~~kiwirv~P~~pvTkKp~e~RMGkGKG~~~~wv   81 (118)
T 2ftc_I            2 IRGPSTEATEFTEGNFAILALGGGYLHWGHFEMMRLTINRSMDPKNMFAIWRVPAPFKPITRKSVGHRMGGGKGAIDHYV   81 (118)
T ss_pred             CCCCCCCCCEEEECCEEEEEEECCEECHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCEEECCCCCCCCCCCCCCCEEE
T ss_conf             86655678898514203587447688499999999999877321468248752289856363334321268988830368


Q ss_pred             EEECCCEEEEEECCCCH-HHHHHHHHHHHHHCCCEEE
Q ss_conf             98321508999749799-9999999998543895179
Q gi|254780254|r   96 CRVKPGRILFEIDGVSE-EVARRAFRLGAAKLSVVTK  131 (138)
Q Consensus        96 ~~Vk~G~ilfEi~gi~~-~~a~~al~~a~~KLP~k~k  131 (138)
                      |+|+||+||||++|+++ ++|++||+++++|||++|+
T Consensus        82 a~Vk~G~ilfEi~g~~~~~~a~~al~~aa~KLPiktk  118 (118)
T 2ftc_I           82 TPVKAGRLVVEMGGRCEFEEVQGFLDQVAHKLPFAAK  118 (118)
T ss_pred             EEECCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCC
T ss_conf             8871473999971789389999999988771897759


No 5  
>>2zkr_h 60S ribosomal protein L10; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} PDB: 1s1i_I (h:)
Probab=100.00  E-value=0  Score=287.41  Aligned_cols=136  Identities=19%  Similarity=0.179  Sum_probs=129.5

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCEE----ECCCEEECHHHHHHHHHHHHHHC-----CCCCEEEEEECC
Q ss_conf             998887755106789897234778753121310327----40531325999999999999742-----678468987549
Q gi|254780254|r    1 MLRQPKNTKYPKQFKGRIKGVAKGGSRICFGNFALK----AQEANRIGSSEIEAARRAISRGM-----KRAGRVWICVFP   71 (138)
Q Consensus         1 mml~Pk~~KyrK~~kgr~~g~~~~~~~l~fG~yGL~----a~e~g~it~~qiEaaR~~i~R~l-----kk~gkiwirv~P   71 (138)
                      ||++|++++|+|+|++++.+.+..++.+.+|+||++    |+|+++|+++||||+|++|+|+|     ++++++||++||
T Consensus        14 ~~~~Pkr~k~~K~~k~ki~~~~~g~~~~~~~~~~~~~~l~a~e~g~i~~~qlEaaR~ai~r~l~k~~~k~~~~~~ir~~P   93 (214)
T 2zkr_h           14 NKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLCGHMVSDEYEQLSSEALEAARICANKYMVKSCGKDGFHIRVRLHP   93 (214)
T ss_dssp             SCCCCCTTTCCCCCCCCCCSSCEECSSSCSTTCSEEEEEEESSCEEEEHHHHHHHHHHHHHHHHHHHCTTCCEEEECCCC
T ss_pred             CCCCCCHHHCCCCCCCCEEEECCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECC
T ss_conf             88986143228899982577316787666553662899987565222278899999999765543036567569999678


Q ss_pred             CCEEEEE---------CCCCCCCCCCCCCCEEEEEECCCEEEEEECCCC--HHHHHHHHHHHHHHCCCEEEEEEEE
Q ss_conf             8607862---------154400144788110699832150899974979--9999999999854389517999986
Q gi|254780254|r   72 DVPVTAK---------PTEVRMGKGKGNVEKWVCRVKPGRILFEIDGVS--EEVARRAFRLGAAKLSVVTKFIQRV  136 (138)
Q Consensus        72 ~~pvTkK---------p~e~RMGkGKG~~~~wv~~Vk~G~ilfEi~gi~--~~~a~~al~~a~~KLP~k~k~i~k~  136 (138)
                      |+|+|++         |+|+|||+|||+||||||+|++|+||||+.+++  +++|++||++|++|||++|+||++.
T Consensus        94 ~~~it~k~~~~~~~a~~~~~RMGkGKG~~~~~varVk~G~iIfEi~g~~~~~~~ak~alr~a~~KLP~~~kiv~~~  169 (214)
T 2zkr_h           94 FHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVAKVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISK  169 (214)
T ss_dssp             CEEEEECTTTCCSSCSSTTSSSTTCCCEEEEEEEEECTTCEEEEEEECSTTHHHHHHHHHHHHHTSSSCEEEEECC
T ss_pred             CCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEECCCCHHHHHHHHHHHCCCCCCCEEEEEEE
T ss_conf             8046742420134654300245577788777999763897899998447799999999997454389967999964


No 6  
>>1vq8_H 50S ribosomal protein L10E; ribosome 50S, protein-protein complex, RNA-RNA complex, protein-RNA complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} (H:)
Probab=100.00  E-value=2.8e-45  Score=278.85  Aligned_cols=136  Identities=16%  Similarity=0.170  Sum_probs=128.9

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCC----EEECCCEEECHHHHHHHHHHHHHHCC------CCCEEEEEECC
Q ss_conf             988877551067898972347787531213103----27405313259999999999997426------78468987549
Q gi|254780254|r    2 LRQPKNTKYPKQFKGRIKGVAKGGSRICFGNFA----LKAQEANRIGSSEIEAARRAISRGMK------RAGRVWICVFP   71 (138)
Q Consensus         2 ml~Pk~~KyrK~~kgr~~g~~~~~~~l~fG~yG----L~a~e~g~it~~qiEaaR~~i~R~lk------k~gkiwirv~P   71 (138)
                      .|+|++++|+|+|++++++.+..++.+.+|+||    |+|+|+++|+++||||||++|+|+|+      ++|++|||+||
T Consensus        12 ~~~Pk~~~~rk~~k~ki~~~~~g~~~~~~~~~~~~~~l~a~e~~~i~~~~lEaaR~~i~r~lk~~~g~~~~~~~~irv~P   91 (171)
T 1vq8_H           12 PAYTRREYITGIPGSKIAQHKMGRKQKDADDYPVQISLIVEETVQLRHGSLEASRLSANRHLIKELGEEGDYKMTLRKFP   91 (171)
T ss_dssp             CCCCCTTTCCCCCCCCCCCSBCSCTTSCSTTCSEEEEEEESSCEEEEHHHHHHHHHHHHHHHHHHHCTTCSCEEEECCCC
T ss_pred             CCCCCHHCCCCCCCCCEEEECCCCCCCCCCCCCEEEEEEECCCCEECHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECC
T ss_conf             88854000378998732782158743554667738999986762035899999999998410554075667259999568


Q ss_pred             CCEEEEECC---------CCCCCCCCCCCCEEEEEECCCEEEEEECCC--CHHHHHHHHHHHHHHCCCEEEEEEEEC
Q ss_conf             860786215---------440014478811069983215089997497--999999999998543895179999862
Q gi|254780254|r   72 DVPVTAKPT---------EVRMGKGKGNVEKWVCRVKPGRILFEIDGV--SEEVARRAFRLGAAKLSVVTKFIQRVV  137 (138)
Q Consensus        72 ~~pvTkKp~---------e~RMGkGKG~~~~wv~~Vk~G~ilfEi~gi--~~~~a~~al~~a~~KLP~k~k~i~k~~  137 (138)
                      |.|+|+||.         |+|||+|||+|+|||++|++|+||||+.|+  ++++|++||++|++|||++|+||+++.
T Consensus        92 ~~~it~k~~~~~~ga~rle~rMGkgkG~~~~~~arVk~G~iifei~g~~~~~~~a~~al~~a~~KLP~~~kiv~~~~  168 (171)
T 1vq8_H           92 HQVLRENKQATGAGADRVSDGMRAAFGKIVGTAARVQAGEQLFTAYCNVEDAEHVKEAFRRAYNKITPSCRIDSSPA  168 (171)
T ss_dssp             CEEEEECC-----------CCSTTCCCEEEEEEEEECTTCEEEEEEECTTTHHHHHHHHHHHGGGSSSCEEEEECSC
T ss_pred             CCEEEECHHHHCCCHHHHCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCEEEEEEEC
T ss_conf             82025065552012111133567787886679999628978999723620499999999987432999779999617


No 7  
>>2pa2_A 60S ribosomal protein L10; QM protein, , structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.50A {Homo sapiens} (A:)
Probab=100.00  E-value=1.8e-41  Score=257.30  Aligned_cols=120  Identities=19%  Similarity=0.121  Sum_probs=112.0

Q ss_pred             CCCCCCCCCCCCHHHCCEEECCCEEECHHHHHHHHHHHHHHC-----CCCCEEEEEECCCCEEEE---------ECCCCC
Q ss_conf             723477875312131032740531325999999999999742-----678468987549860786---------215440
Q gi|254780254|r   18 IKGVAKGGSRICFGNFALKAQEANRIGSSEIEAARRAISRGM-----KRAGRVWICVFPDVPVTA---------KPTEVR   83 (138)
Q Consensus        18 ~~g~~~~~~~l~fG~yGL~a~e~g~it~~qiEaaR~~i~R~l-----kk~gkiwirv~P~~pvTk---------Kp~e~R   83 (138)
                      .+|.++++++|.||+|||+|+|+++|+++||||+|++++|+|     ++++++||++|||.|+|+         +|+|+|
T Consensus         4 ~~G~~~~~~~l~~g~~gL~a~e~~~i~~~~lEaaR~~i~r~l~k~~~k~~~~~~i~~~P~~~~~~~~~~~~~~ak~~~~r   83 (151)
T 2pa2_A            4 DLGRKKAKVDEFPLCGHMVSDEYEQLSSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTG   83 (151)
T ss_dssp             -----CCCTTTCCEEEEEEECSCEEEEHHHHHHHHHHHHHHHHHHHCTTSEEEEECCSCC--------------------
T ss_pred             CCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCEEEECCHHHHCCCCCCCCCC
T ss_conf             56677466665876899987672110388899999999999998727676379999833400351733410364432335


Q ss_pred             CCCCCCCCCEEEEEECCCEEEEEECCCCH--HHHHHHHHHHHHHCCCEEEEEEEEC
Q ss_conf             01447881106998321508999749799--9999999998543895179999862
Q gi|254780254|r   84 MGKGKGNVEKWVCRVKPGRILFEIDGVSE--EVARRAFRLGAAKLSVVTKFIQRVV  137 (138)
Q Consensus        84 MGkGKG~~~~wv~~Vk~G~ilfEi~gi~~--~~a~~al~~a~~KLP~k~k~i~k~~  137 (138)
                      ||+|||+|+||||+|++|+||||+.|+++  ++|++||++|++|||++|+||.+..
T Consensus        84 MgkgkG~~~~~varVk~G~iifEi~g~~~~~e~ak~al~~a~~KLP~~~kiv~~~~  139 (151)
T 2pa2_A           84 MRGAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKK  139 (151)
T ss_dssp             ---------CCEEEECTTBEEEEEEECGGGHHHHHHHHHHHGGGSSSCEEEEEESC
T ss_pred             CCCCCCCCCEEEEEECCCCEEEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEEEE
T ss_conf             66666686679999538978999850445699999999986312899769999611


No 8  
>>1ffk_F Ribosomal protein L10E; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} (F:)
Probab=100.00  E-value=2e-38  Score=239.87  Aligned_cols=131  Identities=18%  Similarity=0.113  Sum_probs=112.8

Q ss_pred             CCCCCCCCCCCCCC---CCCCCCCCCCCHHHC----CEEECCCEEECHHHHHHHHHHHHHHCCCCC-----EEEEEECCC
Q ss_conf             87755106789897---234778753121310----327405313259999999999997426784-----689875498
Q gi|254780254|r    5 PKNTKYPKQFKGRI---KGVAKGGSRICFGNF----ALKAQEANRIGSSEIEAARRAISRGMKRAG-----RVWICVFPD   72 (138)
Q Consensus         5 Pk~~KyrK~~kgr~---~g~~~~~~~l~fG~y----GL~a~e~g~it~~qiEaaR~~i~R~lkk~g-----kiwirv~P~   72 (138)
                      |.+|+ ++|-+|-.   -..-.-||...+++|    +|+|+|++||+++||||||++|+|+|++.+     ++|||+|||
T Consensus        12 p~ytr-~~y~~gvP~~ki~~f~mGn~~~~~~fp~~~~L~a~e~~qI~~~alEAaR~ai~r~l~k~~G~~~f~~~irvfP~   90 (157)
T 1ffk_F           12 PAYTR-REYISGIPGKGIAQFKMGNNGAGPTYPAQVENVVEKPVQIRHNALEAARNAANRFVQNSGAAANYKFRIRKFPF   90 (157)
T ss_pred             CCCCH-HHHCCCCCCCCEECCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCC
T ss_conf             89744-45226899986010546775335677747899986553015999999999999876664276631899995898


Q ss_pred             CEEEEECCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCHHHHHHHHHHHHHHCCCEEEEEEEEC
Q ss_conf             60786215440014478811069983215089997497999999999998543895179999862
Q gi|254780254|r   73 VPVTAKPTEVRMGKGKGNVEKWVCRVKPGRILFEIDGVSEEVARRAFRLGAAKLSVVTKFIQRVV  137 (138)
Q Consensus        73 ~pvTkKp~e~RMGkGKG~~~~wv~~Vk~G~ilfEi~gi~~~~a~~al~~a~~KLP~k~k~i~k~~  137 (138)
                      . |+++++++|||+|||++++|||+|++|+||||+.++++++|++||++|++|||++|+|+++++
T Consensus        91 ~-v~rk~~~~rMg~gkGkp~~~varVk~G~iifei~g~~e~~ak~Alr~A~~KLp~~~ki~s~~~  154 (157)
T 1ffk_F           91 H-VIREQDGDGMRAPFGKSVGTAARSHGANHDFIAWVNPDPAVEFAWRRAYMKVTPTVNIDSSPA  154 (157)
T ss_pred             C-CCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEECCHHHHHHHHHHHHCCCCCCEEEEECCC
T ss_conf             5-322466674677779875689995589989999826889999999997443898569873268


No 9  
>>1zbr_A AAQ65385, conserved hypothetical protein; alpha-beta protein., structural genomics, PSI, protein structure initiative; 2.60A {Porphyromonas gingivalis W83} (A:205-263)
Probab=48.89  E-value=13  Score=18.16  Aligned_cols=23  Identities=13%  Similarity=0.209  Sum_probs=19.7

Q ss_pred             CCCCEEEEEECCCEEEEEECCCC
Q ss_conf             88110699832150899974979
Q gi|254780254|r   89 GNVEKWVCRVKPGRILFEIDGVS  111 (138)
Q Consensus        89 G~~~~wv~~Vk~G~ilfEi~gi~  111 (138)
                      |-||..+..|.||.||+....-+
T Consensus         3 GHID~larFv~p~~vl~~~~~d~   25 (59)
T 1zbr_A            3 GHIDTLARFVDTRTIVYVRSEDP   25 (59)
T ss_dssp             SCGGGSEEEEETTEEEEEECCCT
T ss_pred             CCCCCEEEECCCCCEEEEECCCC
T ss_conf             65123589807995688624787


No 10 
>>3hvm_A Agmatine deiminase; hydrolase; 2.10A {Helicobacter pylori J99} PDB: 2cmu_A (A:199-265)
Probab=46.63  E-value=13  Score=18.00  Aligned_cols=34  Identities=3%  Similarity=-0.000  Sum_probs=24.1

Q ss_pred             CCCCEEEEEECCCEEEEEECCCC----H---HHHHHHHHHH
Q ss_conf             88110699832150899974979----9---9999999998
Q gi|254780254|r   89 GNVEKWVCRVKPGRILFEIDGVS----E---EVARRAFRLG  122 (138)
Q Consensus        89 G~~~~wv~~Vk~G~ilfEi~gi~----~---~~a~~al~~a  122 (138)
                      |-||..+..|.+|.||+....-+    .   ..+++.|+.+
T Consensus         3 GHID~lArFv~p~~vl~~~~~d~~dp~~~~~~~~~~~L~~~   43 (67)
T 3hvm_A            3 SHTDTLARFLDKDTIVYSACEDKNDEHYTALKKMQEELKTF   43 (67)
T ss_dssp             CCGGGTEEEEETTEEEEEECCCTTSTTHHHHHHHHHHHHHC
T ss_pred             CCCCCCEEECCCCEEEEEEECCCCCCHHHHHHHHHHHHHHH
T ss_conf             77402104447983999971477631489999999999985


No 11 
>>3a7s_A Ubiquitin carboxyl-terminal hydrolase isozyme L5; ubiquitin-proteasome pathway, alternative splicing, polymorphism, protease, proteasome; 2.20A {Homo sapiens} (A:)
Probab=37.35  E-value=25  Score=16.48  Aligned_cols=22  Identities=27%  Similarity=0.457  Sum_probs=19.5

Q ss_pred             CCCCEEEEEECCCEEEEEECCC
Q ss_conf             8811069983215089997497
Q gi|254780254|r   89 GNVEKWVCRVKPGRILFEIDGV  110 (138)
Q Consensus        89 G~~~~wv~~Vk~G~ilfEi~gi  110 (138)
                      ..-.|++|.|+.+--|+|++|.
T Consensus       160 ~~~~HFI~fV~~~G~lyELDG~  181 (228)
T 3a7s_A          160 EDAFHFVSYVPVNGRLYELDGL  181 (228)
T ss_dssp             --CCEEEEEEEETTEEEEEETT
T ss_pred             CCCEEEEEEEEECCEEEEECCC
T ss_conf             8644899988639979994389


No 12 
>>3ihr_A Ubiquitin carboxyl-terminal hydrolase isozyme L5; center for eukaryotic structural genomics, UCH37, UCH-L5, ubiquitin hydrolase, proteasome, INO80; 2.95A {Homo sapiens} (A:1-227)
Probab=37.27  E-value=25  Score=16.46  Aligned_cols=22  Identities=27%  Similarity=0.457  Sum_probs=19.4

Q ss_pred             CCCCEEEEEECCCEEEEEECCC
Q ss_conf             8811069983215089997497
Q gi|254780254|r   89 GNVEKWVCRVKPGRILFEIDGV  110 (138)
Q Consensus        89 G~~~~wv~~Vk~G~ilfEi~gi  110 (138)
                      ..-.|++|.|+.+--|+|++|.
T Consensus       160 ~~~~HFIafV~~~G~lyELDG~  181 (227)
T 3ihr_A          160 EDAFHFVSYVPVNGRLYELDGL  181 (227)
T ss_dssp             --CEEEEEEEEETTEEEEEETT
T ss_pred             CCCEEEEEEEEECCEEEEECCC
T ss_conf             7663789999659999991289


No 13 
>>2yx5_A UPF0062 protein MJ1593; anti parallel beta sheet, NPPSFA, national project on protein structural and functional analyses; 2.30A {Methanocaldococcus jannaschii} (A:)
Probab=37.26  E-value=31  Score=15.91  Aligned_cols=33  Identities=21%  Similarity=0.276  Sum_probs=27.3

Q ss_pred             EEEECCCEEE-EEECCCCHHHHHHHHHHHHHHCC
Q ss_conf             9983215089-99749799999999999854389
Q gi|254780254|r   95 VCRVKPGRIL-FEIDGVSEEVARRAFRLGAAKLS  127 (138)
Q Consensus        95 v~~Vk~G~il-fEi~gi~~~~a~~al~~a~~KLP  127 (138)
                      |..|+.|+++ |++++.+.+.|.+-.+..+.+|=
T Consensus        34 V~~vRvgK~~~~~i~~~~~e~a~~~v~~i~~~LL   67 (83)
T 2yx5_A           34 VKEVQTYKMIDIIMEGENEEKVKEEVEEMCKKLL   67 (83)
T ss_dssp             CCCCCCCEEEEEEEC-CCHHHHHHHHHHHHHHTT
T ss_pred             CCEEEEEEEEEEEECCCCHHHHHHHHHHHHHHHC
T ss_conf             6635755599999857998999999999999863


No 14 
>>1xd3_A Ubiquitin carboxyl-terminal esterase L3; enzyme-ligand complex, active site crossover loop, hydrolase; HET: GVE; 1.45A {Homo sapiens} (A:)
Probab=36.71  E-value=27  Score=16.23  Aligned_cols=22  Identities=23%  Similarity=0.312  Sum_probs=19.5

Q ss_pred             CCCCEEEEEECCCEEEEEECCC
Q ss_conf             8811069983215089997497
Q gi|254780254|r   89 GNVEKWVCRVKPGRILFEIDGV  110 (138)
Q Consensus        89 G~~~~wv~~Vk~G~ilfEi~gi  110 (138)
                      ..-.|+||.|+.+--|+|++|.
T Consensus       165 ~~~~HFI~fV~~~G~lyELDG~  186 (230)
T 1xd3_A          165 KVDLHFIALVHVDGHLYELDGR  186 (230)
T ss_dssp             CCCEEEEEEEEETTEEEEECTT
T ss_pred             CCCEEEEEEEEECCEEEECCCC
T ss_conf             7552589999769999986699


No 15 
>>3h7c_X Agmatine deiminase; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; HET: MSE 211 1PE; 1.50A {Arabidopsis thaliana} PDB: 1vkp_A* 2q3u_A* 3h7k_A* (X:163-296)
Probab=36.51  E-value=32  Score=15.84  Aligned_cols=58  Identities=14%  Similarity=0.369  Sum_probs=39.6

Q ss_pred             EEECHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEEECCCCCCCC-CCCCCCEEEEEECCCEEEEEECCCCH
Q ss_conf             1325999999999999742678468987549860786215440014-47881106998321508999749799
Q gi|254780254|r   41 NRIGSSEIEAARRAISRGMKRAGRVWICVFPDVPVTAKPTEVRMGK-GKGNVEKWVCRVKPGRILFEIDGVSE  112 (138)
Q Consensus        41 g~it~~qiEaaR~~i~R~lkk~gkiwirv~P~~pvTkKp~e~RMGk-GKG~~~~wv~~Vk~G~ilfEi~gi~~  112 (138)
                      .-+|-.|||+   .+.++|.=.--+|+-           .+...+- .-|-||.|+..+.+|.|+.....-..
T Consensus        26 p~~s~~~ie~---~L~~~LGv~kviWL~-----------~G~~~dd~TdgHID~~arF~~~~~il~~~~~d~~   84 (134)
T 3h7c_X           26 PHXSKEQIEE---ELKKYLGVQSFIWLP-----------RGLYGDEDTNGHIDNXCCFARPGVVLLSWTDDET   84 (134)
T ss_dssp             TTSCHHHHHH---HHHHHHCCCEEEEES-----------CCCTTCGGGTCCGGGTEEEEETTEEEEEECCCTT
T ss_pred             CCCCHHHHHH---HHHHHHCCCEEEEEC-----------CCEECCCCCCCCCHHEEEECCCCEEEEEECCCCC
T ss_conf             9989999999---999862975599975-----------7120787876550004897289807987428876


No 16 
>>2q9v_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; Cys Ser mutant, structural genomics consortium, SGC, transferase; 2.00A {Homo sapiens} (A:)
Probab=35.95  E-value=29  Score=16.03  Aligned_cols=47  Identities=19%  Similarity=0.191  Sum_probs=34.3

Q ss_pred             CCCCEEEEEECCCEEEEEECCC-----CHHHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf             8811069983215089997497-----9999999999985438951799998
Q gi|254780254|r   89 GNVEKWVCRVKPGRILFEIDGV-----SEEVARRAFRLGAAKLSVVTKFIQR  135 (138)
Q Consensus        89 G~~~~wv~~Vk~G~ilfEi~gi-----~~~~a~~al~~a~~KLP~k~k~i~k  135 (138)
                      |++.+-.-.+++|..|.+++|+     +.+.+.+.|+.+....++...+-..
T Consensus        37 ~s~A~~~G~l~~GD~Il~VNg~~v~~~t~~ev~~~l~~~~~~~~~~l~v~r~   88 (90)
T 2q9v_A           37 LGAADTDGRLRSGDELISVDGTPVIGKSHQLVVQLMQQAAKQGHVNLTVRQT   88 (90)
T ss_dssp             TSHHHHHCCCCTTCEEEEETTEECTTSCHHHHHHHHHHHHHHTEEEEEEEEC
T ss_pred             CCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHHCCCCCEEEEEEEEC
T ss_conf             9979970999756799999999988998999999998489998899999823


No 17 
>>1cmx_A Protein (ubiquitin YUH1-UBAL); ubiquitin hydrolase, deubiquitinating enzyme, cysteine protease, enzyme specificity; 2.25A {Synthetic} (A:)
Probab=35.38  E-value=31  Score=15.90  Aligned_cols=20  Identities=25%  Similarity=0.418  Sum_probs=18.4

Q ss_pred             CCEEEEEECCCEEEEEECCC
Q ss_conf             11069983215089997497
Q gi|254780254|r   91 VEKWVCRVKPGRILFEIDGV  110 (138)
Q Consensus        91 ~~~wv~~Vk~G~ilfEi~gi  110 (138)
                      -.|+||.|+.+--|+|++|.
T Consensus       164 ~~HFI~fV~~~G~LyELDG~  183 (236)
T 1cmx_A          164 NLHYITYVEENGGIFELDGR  183 (236)
T ss_dssp             SEEEEEEEECSSEEEEECTT
T ss_pred             CEEEEEEEEECCEEEECCCC
T ss_conf             71689999679989984799


No 18 
>>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein, STXBP4 protein, structural genomics, NPPSFA; NMR {Mus musculus} (A:)
Probab=35.05  E-value=26  Score=16.33  Aligned_cols=46  Identities=22%  Similarity=0.109  Sum_probs=33.5

Q ss_pred             CCCCEEEEEECCCEEEEEECCC-----CHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf             8811069983215089997497-----999999999998543895179999
Q gi|254780254|r   89 GNVEKWVCRVKPGRILFEIDGV-----SEEVARRAFRLGAAKLSVVTKFIQ  134 (138)
Q Consensus        89 G~~~~wv~~Vk~G~ilfEi~gi-----~~~~a~~al~~a~~KLP~k~k~i~  134 (138)
                      |++.+-+-.+++|..|.+++|.     +.+.|.+.|+.+...+.+..+...
T Consensus        51 gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~ev~~~lk~~~~~~~~~V~~~~  101 (109)
T 1wi4_A           51 GGDCYKDGRLKPGDQLVSINKESMIGVSFEEAKSIITRAKLRSESPWEIAF  101 (109)
T ss_dssp             TSHHHHHCSCCTTCBEEEETTSCCTTCCHHHHHHHHHHSCCSSSSCEEEEE
T ss_pred             CCCHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHHCCCCCCCEEEEEE
T ss_conf             984754499999999999999998999799999999977799876799988


No 19 
>>3h9i_A Cation efflux system protein CUSB; three-helix bundle, beta barrel, copper, copper transport, ION transport, transport, transport protein; 3.40A {Escherichia coli k-12} PDB: 3h94_A 3h9t_B (A:119-241)
Probab=34.20  E-value=25  Score=16.46  Aligned_cols=31  Identities=16%  Similarity=0.072  Sum_probs=18.4

Q ss_pred             EEECCCEEEEEECCCCHHHHHHHHHHHHHHC
Q ss_conf             9832150899974979999999999985438
Q gi|254780254|r   96 CRVKPGRILFEIDGVSEEVARRAFRLGAAKL  126 (138)
Q Consensus        96 ~~Vk~G~ilfEi~gi~~~~a~~al~~a~~KL  126 (138)
                      ..|+.|++||+++......+...+..+...+
T Consensus        24 ~~V~kGq~l~~ld~~~~~~a~a~~~~a~~~~   54 (123)
T 3h9i_A           24 DKVQKGTPLLDLTIPDWVEAQSEYLLLRETG   54 (123)
T ss_dssp             CEESTTCCCEEEECHHHHHHHHHHHHHHHSC
T ss_pred             CEEECCCEEEEECCHHHHHHHHHHHHHHHHH
T ss_conf             8883796256875726899999999999999


No 20 
>>2wdt_A Ubiquitin carboxyl-terminal hydrolase L3; hydrolase protein binding complex, enzyme-ligand complex, UCH-L superfamily, cystein proteinase, peptidase_C12, phosphoprotein; 2.30A {Plasmodium falciparum} PDB: 2we6_A (A:)
Probab=32.72  E-value=37  Score=15.48  Aligned_cols=22  Identities=18%  Similarity=0.258  Sum_probs=19.9

Q ss_pred             CCCCEEEEEECCCEEEEEECCC
Q ss_conf             8811069983215089997497
Q gi|254780254|r   89 GNVEKWVCRVKPGRILFEIDGV  110 (138)
Q Consensus        89 G~~~~wv~~Vk~G~ilfEi~gi  110 (138)
                      ....|++|.|+.+--|+|++|.
T Consensus       160 ~~~~HFI~FV~~~G~l~ELDG~  181 (232)
T 2wdt_A          160 DVDTHFIVFVQIEGKIIELDGR  181 (232)
T ss_dssp             CCCEEEEEEEESSSEEEEECTT
T ss_pred             CCCEEEEEEEEECCEEEEECCC
T ss_conf             7770599999719989993388


No 21 
>>1vq3_A Phosphoribosylformylglycinamidine synthase, PURS subunit; TM1244, PURS subunit (EC 6.3.5.3), structural genomics; 1.90A {Thermotoga maritima MSB8} (A:)
Probab=31.69  E-value=38  Score=15.38  Aligned_cols=33  Identities=18%  Similarity=0.324  Sum_probs=28.1

Q ss_pred             EEEEECCCEEE-EEECCCCHHHHHHHHHHHHHHC
Q ss_conf             69983215089-9974979999999999985438
Q gi|254780254|r   94 WVCRVKPGRIL-FEIDGVSEEVARRAFRLGAAKL  126 (138)
Q Consensus        94 wv~~Vk~G~il-fEi~gi~~~~a~~al~~a~~KL  126 (138)
                      -|..|+.|+.+ |++++.+++.|.+-.+..+.+|
T Consensus        47 ~V~~vrvgK~~~~~i~~~~~e~a~~~v~~ia~~l   80 (94)
T 1vq3_A           47 PVKKLRLGKSIHLEVEAENKEKAYEIVKKACEEL   80 (94)
T ss_dssp             CEEEEEEEEEEEEEEECSSHHHHHHHHHHHHHHT
T ss_pred             CCCCEEEEEEEEEEEECCCHHHHHHHHHHHHHHH
T ss_conf             6460686789999980688789999999999987


No 22 
>>1u3b_A Amyloid beta A4 precursor protein-binding, family A, member 1; X11S/mints, PDZ domain, scaffold protein, protein trafficking, protein transport; NMR {Homo sapiens} (A:1-90)
Probab=30.44  E-value=25  Score=16.43  Aligned_cols=45  Identities=11%  Similarity=0.164  Sum_probs=32.1

Q ss_pred             CCCCEEEEEECCCEEEEEECCC-----CHHHHHHHHHHHHHHCCCEEEEE
Q ss_conf             8811069983215089997497-----99999999999854389517999
Q gi|254780254|r   89 GNVEKWVCRVKPGRILFEIDGV-----SEEVARRAFRLGAAKLSVVTKFI  133 (138)
Q Consensus        89 G~~~~wv~~Vk~G~ilfEi~gi-----~~~~a~~al~~a~~KLP~k~k~i  133 (138)
                      |++.+-.-.+++|..|.+++|.     +.+.+.+.++.+...+++...+.
T Consensus        39 gs~A~~~G~L~~GD~Il~INg~~v~~~~~~~~~~~i~~~~~~~~l~i~~~   88 (90)
T 1u3b_A           39 GGPAEKSGKLNIGDQIMSINGTSLVGLPLSTCQSIIKGLKNQSRVKLNIV   88 (90)
T ss_dssp             SSHHHHHSSCCTTCEEEEETTEECTTSCHHHHHHHHHHTTSCSEEEEEEE
T ss_pred             CCEEEECCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCEEEEEEEE
T ss_conf             99010369897451862515536789999999987751156504666641


No 23 
>>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3; neuron-specific X11L2 protein, neuronal MUNC18-1-interacting protein 3, MINT-3; NMR {Homo sapiens} (A:)
Probab=29.14  E-value=38  Score=15.42  Aligned_cols=45  Identities=20%  Similarity=0.230  Sum_probs=31.4

Q ss_pred             CCCCEEEEEECCCEEEEEECCC-----CHHHHHHHHHHHHHHCCCEEEEE
Q ss_conf             8811069983215089997497-----99999999999854389517999
Q gi|254780254|r   89 GNVEKWVCRVKPGRILFEIDGV-----SEEVARRAFRLGAAKLSVVTKFI  133 (138)
Q Consensus        89 G~~~~wv~~Vk~G~ilfEi~gi-----~~~~a~~al~~a~~KLP~k~k~i  133 (138)
                      |++.+-+-.+++|..|.||+|.     +.+.+.+.|+.+..-+++...+.
T Consensus        47 gspA~~~g~L~~GD~Il~Vng~~v~~~~~~ev~~~l~~~~~~~~i~l~v~   96 (101)
T 2yt7_A           47 GGPAERSGALSIGDRLTAINGTSLVGLPLAACQAAVRETKSQTSVTLSIV   96 (101)
T ss_dssp             TSTTGGGSSCCTTCEEEEESSCBCTTSCHHHHHHHHHHTTTSSEEEEEEC
T ss_pred             CCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCCCEEEEEEE
T ss_conf             99799729996446848899998899989999999976999988999998


No 24 
>>2f7l_A 455AA long hypothetical phospho-sugar mutase; phosphomannomutase, phosphoglucomutase, isomerase; 2.80A {Sulfolobus tokodaii} (A:1-149)
Probab=27.55  E-value=45  Score=14.96  Aligned_cols=97  Identities=12%  Similarity=0.071  Sum_probs=56.7

Q ss_pred             CCCHHHCCEEECCCEEECHHHHHHHHHHHHHHCCCCCEEEEEEC--CC---------------------CEEEEECC---
Q ss_conf             31213103274053132599999999999974267846898754--98---------------------60786215---
Q gi|254780254|r   27 RICFGNFALKAQEANRIGSSEIEAARRAISRGMKRAGRVWICVF--PD---------------------VPVTAKPT---   80 (138)
Q Consensus        27 ~l~fG~yGL~a~e~g~it~~qiEaaR~~i~R~lkk~gkiwirv~--P~---------------------~pvTkKp~---   80 (138)
                      .+.||.||++..-+..+|...++..=.++-.+++.++.+.+--=  +.                     ..++.-|.   
T Consensus         2 ~~~Fgt~giRG~~~~~lt~~~~~~lg~a~~~~l~~~~~VvvG~D~R~~s~~~~~~~~~gl~~~G~~V~~~g~~~tP~~~~   81 (149)
T 2f7l_A            2 GKLFGTDGVRGIVNKELTPELVLKLSKAIGTFFGKNSKILVGRDVRAGGDMLVKIVEGGLLSVGVEVYDGGMAPTPALQY   81 (149)
T ss_dssp             CSSCCSSSEEEEBTTTBCHHHHHHHHHHHHHHHCTTCEEEEEECSCTTHHHHHHHHHHHHHHTTCEEEEEEECCHHHHHH
T ss_pred             CCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHH
T ss_conf             86427887201408976999999999999999677983999979973699999999999997699799869678499999


Q ss_pred             CCCCCCCCCCCCEEEEEECCCEEEEEE---CC--CCHHHHHHHHHHHH
Q ss_conf             440014478811069983215089997---49--79999999999985
Q gi|254780254|r   81 EVRMGKGKGNVEKWVCRVKPGRILFEI---DG--VSEEVARRAFRLGA  123 (138)
Q Consensus        81 e~RMGkGKG~~~~wv~~Vk~G~ilfEi---~g--i~~~~a~~al~~a~  123 (138)
                      -++.-...|.+.--++.-+++..=|.+   +|  ++++..++......
T Consensus        82 ~~~~~~~~ggi~iTaShnp~~~nGiK~~~~~G~~i~~~~~~~I~~~~~  129 (149)
T 2f7l_A           82 AVKTLGYDGGVVITASHNPAPYNGIKVVDKDGIEIRREKENEIEDLFF  129 (149)
T ss_dssp             HHHHHCCSEEEEECCTTSCTTEEEEEEECTTSSBCCHHHHHHHHHHHH
T ss_pred             HHHHCCCCCCEECCCCCCCHHCCCCEEECCCCCCCCHHHHHHHHHHHH
T ss_conf             998469986202567888420278632114565211245555677764


No 25 
>>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1 interacting protein 1, activin receptor interacting protein 1; NMR {Homo sapiens} (A:)
Probab=26.82  E-value=28  Score=16.16  Aligned_cols=42  Identities=17%  Similarity=0.275  Sum_probs=30.2

Q ss_pred             CCCCEEEEEECCCEEEEEECCC-----CHHHHHHHHHHHHHHCCCEE
Q ss_conf             8811069983215089997497-----99999999999854389517
Q gi|254780254|r   89 GNVEKWVCRVKPGRILFEIDGV-----SEEVARRAFRLGAAKLSVVT  130 (138)
Q Consensus        89 G~~~~wv~~Vk~G~ilfEi~gi-----~~~~a~~al~~a~~KLP~k~  130 (138)
                      |++.+-+-.+++|..|+||+|.     +.+.+.+.|+.+...+-+..
T Consensus        46 ~~~A~~~G~L~~GD~Il~INg~~v~~~~~~ev~~ll~~~~~~v~L~V   92 (103)
T 1wfv_A           46 DGPAIRNGRMRVGDQIIEINGESTRDMTHARAIELIKSGGRRVRLLL   92 (103)
T ss_dssp             TSHHHHHCSSCTTCEEEEETTEECSSCCHHHHHHHHHHHCSEECEEE
T ss_pred             CCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCEEEEEE
T ss_conf             99589648877787999999999989979999999970899599999


No 26 
>>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog; PDZ domain, cellular signaling, structural genomics; NMR {Mus musculus} (A:)
Probab=26.67  E-value=43  Score=15.11  Aligned_cols=44  Identities=16%  Similarity=0.205  Sum_probs=32.5

Q ss_pred             CCCCEEEEEECCCEEEEEECCC-----CHHHHHHHHHHHHHHCCCEEEE
Q ss_conf             8811069983215089997497-----9999999999985438951799
Q gi|254780254|r   89 GNVEKWVCRVKPGRILFEIDGV-----SEEVARRAFRLGAAKLSVVTKF  132 (138)
Q Consensus        89 G~~~~wv~~Vk~G~ilfEi~gi-----~~~~a~~al~~a~~KLP~k~k~  132 (138)
                      |++..-+=.+++|..|.+|+|.     +...+.+.++.+...+.+...-
T Consensus        55 ~spA~~aG~L~~GD~Il~INg~~v~~~~~~~~~~~i~~~~~~v~l~v~r  103 (122)
T 1v5q_A           55 DSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDSSITSKVTLEI  103 (122)
T ss_dssp             TSHHHHSCCCCTTCCEEEETTEESSSSCHHHHHHHHHHHTTTTCEEEEE
T ss_pred             CCHHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCCEEEEEEE
T ss_conf             9989984899856498889999389998999999998389931899999


No 27 
>>2etl_A Ubiquitin carboxyl-terminal hydrolase isozyme L1; deubiquitinating thiol hydrolase, ligase; 2.40A {Homo sapiens} (A:)
Probab=26.35  E-value=48  Score=14.83  Aligned_cols=41  Identities=15%  Similarity=0.017  Sum_probs=28.5

Q ss_pred             CCCCEEEEEECCCEEEEEECCCC--------------HHHHHHHHHHHHHHCCCE
Q ss_conf             88110699832150899974979--------------999999999985438951
Q gi|254780254|r   89 GNVEKWVCRVKPGRILFEIDGVS--------------EEVARRAFRLGAAKLSVV  129 (138)
Q Consensus        89 G~~~~wv~~Vk~G~ilfEi~gi~--------------~~~a~~al~~a~~KLP~k  129 (138)
                      ....|+||.|..+--|+|++|..              .+.|.+.++.-..+-|..
T Consensus       162 ~~~~HFI~fV~~~g~lyELDG~~~~Pi~~G~~~~~~~l~~a~~vi~~~i~~~~~~  216 (228)
T 2etl_A          162 KVNFHFILFNNVDGHLYELDGRMPFPVNHGASSEDTLLKDAAKVCREFTEREQGE  216 (228)
T ss_dssp             CCCEEEEEEEEETTEEEEECTTSSSCEEEEECCTTSHHHHHHHHHHHHHHSSTTC
T ss_pred             CCCEEEEEEEEECCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC
T ss_conf             7555899999769989991288778832477883018999999999999718986


No 28 
>>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc, LNX2_human, zinc-finger, polymorphism, ring finger protein 1; 1.3A {Homo sapiens} (A:)
Probab=26.20  E-value=20  Score=16.96  Aligned_cols=42  Identities=14%  Similarity=0.302  Sum_probs=29.6

Q ss_pred             CCCCEEEEEECCCEEEEEECCC-----CHHHHHHHHHHHHHHCCCEE
Q ss_conf             8811069983215089997497-----99999999999854389517
Q gi|254780254|r   89 GNVEKWVCRVKPGRILFEIDGV-----SEEVARRAFRLGAAKLSVVT  130 (138)
Q Consensus        89 G~~~~wv~~Vk~G~ilfEi~gi-----~~~~a~~al~~a~~KLP~k~  130 (138)
                      |++...+-.+++|..|.+|+|.     +...+..+++.+..++.+..
T Consensus        39 gspA~~~G~L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~v~l~v   85 (95)
T 2vwr_A           39 GGLAAQDGRLSSNDRVLAINGHDLKYGTPELAAQIIQASGERVNLTI   85 (95)
T ss_dssp             TSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSEEEEEE
T ss_pred             CCHHHHHHHHCCCCEEEEECCEECCCCCHHHHHHHHHCCCCEEEEEE
T ss_conf             99678432310697999999999889989999999986998599999


No 29 
>>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} (A:)
Probab=25.87  E-value=49  Score=14.78  Aligned_cols=44  Identities=14%  Similarity=0.091  Sum_probs=31.3

Q ss_pred             CCCEEEEEECCCEEEEEECCC-----CHHHHHHHHHHHHHHCCCEEEEE
Q ss_conf             811069983215089997497-----99999999999854389517999
Q gi|254780254|r   90 NVEKWVCRVKPGRILFEIDGV-----SEEVARRAFRLGAAKLSVVTKFI  133 (138)
Q Consensus        90 ~~~~wv~~Vk~G~ilfEi~gi-----~~~~a~~al~~a~~KLP~k~k~i  133 (138)
                      ++...+=.+++|..|.+|+|.     +.+.|.+.|+.+.........+.
T Consensus        54 spA~~~G~L~~GD~Il~INg~~v~~~s~~ev~~~l~~~~~~~~~~v~l~  102 (118)
T 1v6b_A           54 GAAERHGGVVKGDEIMAINGKIVTDYTLAEAEAALQKAWNQGGDWIDLV  102 (118)
T ss_dssp             SHHHHHCSSCTTCEEEEESSCBCTTCBHHHHHHHHHHHHHHTCSEEEEE
T ss_pred             CHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHHCCCCCCCEEEEE
T ss_conf             9799719899899986399989989979999999986326899989999


No 30 
>>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter usage, alternative splicing, cell junction, cell membrane, disease mutation; 1.75A {Homo sapiens} (A:)
Probab=25.75  E-value=24  Score=16.50  Aligned_cols=42  Identities=24%  Similarity=0.329  Sum_probs=30.8

Q ss_pred             CCCCEEEEEECCCEEEEEECCC-----CHHHHHHHHHHHHHHCCCEE
Q ss_conf             8811069983215089997497-----99999999999854389517
Q gi|254780254|r   89 GNVEKWVCRVKPGRILFEIDGV-----SEEVARRAFRLGAAKLSVVT  130 (138)
Q Consensus        89 G~~~~wv~~Vk~G~ilfEi~gi-----~~~~a~~al~~a~~KLP~k~  130 (138)
                      |++...+-.+++|..|.||+|.     +...+.+.++.+..++.+..
T Consensus        31 ~g~A~~aG~L~~GD~Il~INg~~v~~~~~~~~~~~l~~~~~~v~l~v   77 (88)
T 3e17_A           31 TGLATKDGNLHEGDIILKINGTVTENMSLTDARKLIEKSRGKLQLVV   77 (88)
T ss_dssp             TSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHTTTEEEEEE
T ss_pred             CCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCEEEEEE
T ss_conf             99899849997899999999999179989999999986999799999


No 31 
>>1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel, membrane protein; 2.40A {Pseudomonas aeruginosa} (A:41-173)
Probab=23.73  E-value=54  Score=14.54  Aligned_cols=19  Identities=37%  Similarity=0.587  Sum_probs=14.8

Q ss_pred             EEECCCEEEEEECCCCHHH
Q ss_conf             9832150899974979999
Q gi|254780254|r   96 CRVKPGRILFEIDGVSEEV  114 (138)
Q Consensus        96 ~~Vk~G~ilfEi~gi~~~~  114 (138)
                      ..|+.|++|++++......
T Consensus        23 ~~V~kGq~L~~ld~~~~~~   41 (133)
T 1vf7_A           23 SDVKAGQQLYQIDPATYEA   41 (133)
T ss_dssp             EEECTTSEEEEECCHHHHH
T ss_pred             CEECCCCEEEEECCHHHHH
T ss_conf             9988999899984789999


No 32 
>>2qv6_A MJ0145, GTP cyclohydrolase III, MJGC; enzyme, FAPY; HET: GTP; 2.00A {Methanocaldococcus jannaschii} (A:1-127)
Probab=23.10  E-value=55  Score=14.47  Aligned_cols=46  Identities=9%  Similarity=0.096  Sum_probs=37.7

Q ss_pred             CCCCEEEEEECCCEEEEEECCCCHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf             8811069983215089997497999999999998543895179999
Q gi|254780254|r   89 GNVEKWVCRVKPGRILFEIDGVSEEVARRAFRLGAAKLSVVTKFIQ  134 (138)
Q Consensus        89 G~~~~wv~~Vk~G~ilfEi~gi~~~~a~~al~~a~~KLP~k~k~i~  134 (138)
                      ++...++...+-...+.=.+|++++...+++..+..+.|+..++-.
T Consensus        43 ~~~~gl~f~~R~Dn~iavtNGi~~e~~~~i~~~I~~~~PV~i~~~i   88 (127)
T 2qv6_A           43 GAHKGLVFYTRFDNLIAITNGIDLITHKRIQESIRNRYPFTVSMVI   88 (127)
T ss_dssp             HTTTCEEECTTSSEEEEECTTCCHHHHHHHHHHHHHHSSSCEEEEE
T ss_pred             HHCCCEEEEECCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf             6369688420234078885599979999999998635983279999


No 33 
>>1ua4_A Glucokinase, ADP-dependent glucokinase; transferase; HET: GLC BGC AMP; 1.90A {Pyrococcus furiosus} (A:29-113,A:169-215)
Probab=22.57  E-value=37  Score=15.46  Aligned_cols=32  Identities=25%  Similarity=0.416  Sum_probs=26.0

Q ss_pred             ECCCCCCCC--CCCCCCEEEEEECCCEEEEEECC
Q ss_conf             215440014--47881106998321508999749
Q gi|254780254|r   78 KPTEVRMGK--GKGNVEKWVCRVKPGRILFEIDG  109 (138)
Q Consensus        78 Kp~e~RMGk--GKG~~~~wv~~Vk~G~ilfEi~g  109 (138)
                      +..+.|||.  -+-++.|+|+-.+.|--|||+.-
T Consensus        76 ~~De~RMGGQ~~~~~~ih~v~~f~~gf~~~~~~~  109 (132)
T 1ua4_A           76 GWNELRMGGQGDEENCIHYIYEFPRGFRVFEFEA  109 (132)
T ss_dssp             CCSEEEEESHCCCCCCEEEEEEECTTCEETTEEC
T ss_pred             CCCCEEECCHCCCCCCEEEEEEECCCCEECCEEC
T ss_conf             6631630778789875279998089996278756


No 34 
>>2zw2_A Putative uncharacterized protein STS178; purine metabolism, ligase; 1.55A {Sulfolobus tokodaii} (A:)
Probab=22.42  E-value=57  Score=14.39  Aligned_cols=34  Identities=18%  Similarity=0.334  Sum_probs=29.3

Q ss_pred             EEEEECCCEEE-EEECCCCHHHHHHHHHHHHHHCC
Q ss_conf             69983215089-99749799999999999854389
Q gi|254780254|r   94 WVCRVKPGRIL-FEIDGVSEEVARRAFRLGAAKLS  127 (138)
Q Consensus        94 wv~~Vk~G~il-fEi~gi~~~~a~~al~~a~~KLP  127 (138)
                      -|..|+.|+.+ |++++.+.+.|.+.....+.+|+
T Consensus        37 ~V~~VRvgK~~~l~i~~~~~e~a~~~v~~~c~~L~   71 (92)
T 2zw2_A           37 KIIETRAGKYLVFRVNSSSQQEATELVKKLADEMR   71 (92)
T ss_dssp             TEEEEEEEEEEEEEEECSSHHHHHHHHHHHHHHTT
T ss_pred             CCCEEEEEEEEEEEECCCCHHHHHHHHHHHHHHCC
T ss_conf             65447876599999907998999999999996477


No 35 
>>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural genomics, structural genomics consortium, SGC, signaling protein; 1.12A {Homo sapiens} PDB: 2pku_A (A:)
Probab=22.20  E-value=28  Score=16.14  Aligned_cols=41  Identities=7%  Similarity=0.100  Sum_probs=28.6

Q ss_pred             CCCCEEEEEECCCEEEEEECCC-----CHHHHHHHHHHHHHHCCCE
Q ss_conf             8811069983215089997497-----9999999999985438951
Q gi|254780254|r   89 GNVEKWVCRVKPGRILFEIDGV-----SEEVARRAFRLGAAKLSVV  129 (138)
Q Consensus        89 G~~~~wv~~Vk~G~ilfEi~gi-----~~~~a~~al~~a~~KLP~k  129 (138)
                      |++.+-+-.+++|..|.||+|.     +.+.|..+|+.+...+.+.
T Consensus        60 gg~A~~~g~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~v~l~  105 (114)
T 2gzv_A           60 NTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH  105 (114)
T ss_dssp             TSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSEEEEE
T ss_pred             CCHHHCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHCCCCEEEEE
T ss_conf             9804347866644531358683768996999999998599809999


No 36 
>>1xkn_A Putative peptidyl-arginine deiminase; alpha-beta protein, NESG, structural genomics, protein structure initiative, PSI; 1.60A {Chlorobium tepidum tls} (A:157-273)
Probab=22.13  E-value=52  Score=14.60  Aligned_cols=56  Identities=18%  Similarity=0.332  Sum_probs=37.3

Q ss_pred             EEECHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCEEEEEECCCEEEEEECCC
Q ss_conf             1325999999999999742678468987549860786215440014478811069983215089997497
Q gi|254780254|r   41 NRIGSSEIEAARRAISRGMKRAGRVWICVFPDVPVTAKPTEVRMGKGKGNVEKWVCRVKPGRILFEIDGV  110 (138)
Q Consensus        41 g~it~~qiEaaR~~i~R~lkk~gkiwirv~P~~pvTkKp~e~RMGkGKG~~~~wv~~Vk~G~ilfEi~gi  110 (138)
                      .-+|-.|||+.   +.+++.=.--+|+--           +.-.--.-|-+|.||..+.+|.||.....-
T Consensus        26 p~~s~~~ie~~---l~~~LGv~~viwl~~-----------~~~~D~TdgHiD~~arF~~~~~il~~~~~d   81 (117)
T 1xkn_A           26 PSLGKAEIEAQ---LRRYLGIEKVLWLGD-----------GIAGDDTDGHVDDXARFVNENTVVIAVEED   81 (117)
T ss_dssp             TTCCHHHHHHH---HHHHHCCSEEEEECC-----------CCTTCTTSSCGGGTEEEEETTEEEEECCCC
T ss_pred             CCCCHHHHHHH---HHHHHCCCEEEEECC-----------CCCCCCCCCCHHCEEEECCCCEEEEEECCC
T ss_conf             99799999999---999759866998378-----------776776776611058973786068751478


No 37 
>>2jer_A Agmatine deiminase; hydrolase, tetramer, AGDI, 5- fold pseudosymmetric structure, agmatine degradation pathway, covalent amidino adduct; HET: AGT; 1.65A {Enterococcus faecalis} (A:157-289)
Probab=21.62  E-value=54  Score=14.51  Aligned_cols=55  Identities=15%  Similarity=0.281  Sum_probs=36.9

Q ss_pred             EEECHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCEEEEEECCCEEEEEECC
Q ss_conf             132599999999999974267846898754986078621544001447881106998321508999749
Q gi|254780254|r   41 NRIGSSEIEAARRAISRGMKRAGRVWICVFPDVPVTAKPTEVRMGKGKGNVEKWVCRVKPGRILFEIDG  109 (138)
Q Consensus        41 g~it~~qiEaaR~~i~R~lkk~gkiwirv~P~~pvTkKp~e~RMGkGKG~~~~wv~~Vk~G~ilfEi~g  109 (138)
                      .-+|-.|||+   .+.++|.-.--+|+---+           ----.-|-+|.++..+.+|.||.....
T Consensus        27 p~~s~~~ie~---~l~~~LG~~~viWl~~~~-----------~~D~TdgHiD~~arF~~~~~il~~~~~   81 (133)
T 2jer_A           27 PQLSKEAIEQ---KLCDYLNVEKVLWLGDGI-----------DPEETNGHVDDVACFIAPGEVACIYTE   81 (133)
T ss_dssp             TTSCHHHHHH---HHHHHHTCSEEEEECCCS-----------CTTTTSSCGGGTEEEEETTEEEEECCC
T ss_pred             CCCCHHHHHH---HHHHHHCCEEEEEECCCC-----------CCCCCCCCCCCEEEEECCCCEEEEECC
T ss_conf             9989999999---998864980799865876-----------676677775444799479956998338


No 38 
>>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction, membrane, phosphorylation, SH3 domain, protein bindin; 1.70A {Homo sapiens} PDB: 2jwe_A 2osg_A (A:)
Probab=20.77  E-value=24  Score=16.50  Aligned_cols=41  Identities=20%  Similarity=0.323  Sum_probs=28.2

Q ss_pred             CCCCEEEEEECCCEEEEEECCC-----CHHHHHHHHHHHHHHCCCE
Q ss_conf             8811069983215089997497-----9999999999985438951
Q gi|254780254|r   89 GNVEKWVCRVKPGRILFEIDGV-----SEEVARRAFRLGAAKLSVV  129 (138)
Q Consensus        89 G~~~~wv~~Vk~G~ilfEi~gi-----~~~~a~~al~~a~~KLP~k  129 (138)
                      |++.+.+-.+++|.+|.|++|.     +...+...++.....+.+.
T Consensus        31 ~spA~~aG~L~~GD~Il~Ing~~v~~~~~~~~~~~~~~~~~~v~l~   76 (81)
T 2rcz_A           31 DSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSKGKLKMV   76 (81)
T ss_dssp             TSHHHHHSSCCTTCEEEEETTEECTTCCHHHHHHHHHTSTTEEEEE
T ss_pred             CCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCEEEEE
T ss_conf             9989985999889999999999998898899999987798989999


No 39 
>>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ, structural genomics; NMR {Homo sapiens} (A:)
Probab=20.55  E-value=31  Score=15.89  Aligned_cols=42  Identities=17%  Similarity=0.251  Sum_probs=28.1

Q ss_pred             CCCCEEEEEECCCEEEEEECCCC------HHHHHHHHHHHHHHCCCEE
Q ss_conf             88110699832150899974979------9999999999854389517
Q gi|254780254|r   89 GNVEKWVCRVKPGRILFEIDGVS------EEVARRAFRLGAAKLSVVT  130 (138)
Q Consensus        89 G~~~~wv~~Vk~G~ilfEi~gi~------~~~a~~al~~a~~KLP~k~  130 (138)
                      |++..-.-.+++|..|+||+|.+      .+.+.++++.+...+-+.+
T Consensus        64 gspA~~~G~L~~GD~Il~iNg~~v~~~~~~~ev~~~i~~~~~~v~l~V  111 (128)
T 2db5_A           64 GSVADRDQRLKENDQILAINHTPLDQNISHQQAIALLQQTTGSLRLIV  111 (128)
T ss_dssp             TSHHHHTCCCCSSCBEEEESSCBCSTTSCHHHHHHHHHHCCSEEEEEE
T ss_pred             CCHHHHHCCCCCCCEEEEECCEECCCCCCHHHHHHHHHHCCCEEEEEE
T ss_conf             983675189873489999999986779899999999982899599999


No 40 
>>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus} (A:98-200)
Probab=20.55  E-value=39  Score=15.32  Aligned_cols=44  Identities=18%  Similarity=0.406  Sum_probs=30.9

Q ss_pred             CCCCEEEEEECCCEEEEEECCC-----CHHHHHHHHHHHHHHCCCEEEE
Q ss_conf             8811069983215089997497-----9999999999985438951799
Q gi|254780254|r   89 GNVEKWVCRVKPGRILFEIDGV-----SEEVARRAFRLGAAKLSVVTKF  132 (138)
Q Consensus        89 G~~~~wv~~Vk~G~ilfEi~gi-----~~~~a~~al~~a~~KLP~k~k~  132 (138)
                      |++.+-+-.+++|..|.||+|.     +...+.++++.+...+.+.+.=
T Consensus        48 gspA~~~G~l~~GD~Ii~INg~~v~~~~~~~~~~~i~~~~~~v~l~V~r   96 (103)
T 2qt5_A           48 GGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQCGQEATLLIEY   96 (103)
T ss_dssp             TSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTTCSEEEEEEEE
T ss_pred             CCHHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHHCCCEEEEEEEE
T ss_conf             9954542368999899989999988998999999998089979999997


No 41 
>>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large homolog 2, structural genomics, NPPSFA; NMR {Homo sapiens} (A:)
Probab=20.34  E-value=45  Score=14.98  Aligned_cols=41  Identities=15%  Similarity=0.232  Sum_probs=27.4

Q ss_pred             CCCCEEEEEECCCEEEEEECCC----CHHHHHHHHHHHHHHCCCE
Q ss_conf             8811069983215089997497----9999999999985438951
Q gi|254780254|r   89 GNVEKWVCRVKPGRILFEIDGV----SEEVARRAFRLGAAKLSVV  129 (138)
Q Consensus        89 G~~~~wv~~Vk~G~ilfEi~gi----~~~~a~~al~~a~~KLP~k  129 (138)
                      |++...+-.+++|..|.|++|.    +...+.+.++.+...+-+.
T Consensus        39 gs~A~~~g~L~~GD~Il~VNg~~v~~~~~~~~~~lk~~~~~v~l~   83 (91)
T 2e7k_A           39 GGMVAQQGLLHVGDIIKEVNGQPVGSDPRALQELLRNASGSVILK   83 (91)
T ss_dssp             SSHHHHHCCCCTTCEEEEETTEECTTCHHHHHHHHHTCCSSBCEE
T ss_pred             CCHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCEEEE
T ss_conf             984673050457869999989959999999999985598979999


Done!