HHsearch results for GI: 254780254 and protein with PDBid: 1ffk_F
>1ffk_F Ribosomal protein L10E; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: d.41.4.1 PDB: 1jj2_H 1k73_J* 1k8a_J* 1k9m_J* 1kc8_J* 1kd1_J* 1kqs_H* 1m1k_J* 1m90_J* 1n8r_J* 1nji_J* 1q7y_J* 1q81_J* 1q82_J* 1q86_J* 1qvf_H 1qvg_H 1w2b_H 3cxc_H* 1giy_P ...
Probab=100.00 E-value=1.8e-38 Score=239.24 Aligned_cols=132 Identities=17% Similarity=0.112 Sum_probs=111.5
Q ss_pred CCCCCCCCCCCCCCC---CCCCCCCCCCHHHC----CEEECCCEEECHHHHHHHHHHHHHHCCCCC-----EEEEEECCC
Q ss_conf 877551067898972---34778753121310----327405313259999999999997426784-----689875498
Q gi|254780254|r 5 PKNTKYPKQFKGRIK---GVAKGGSRICFGNF----ALKAQEANRIGSSEIEAARRAISRGMKRAG-----RVWICVFPD 72 (138)
Q Consensus 5 Pk~~KyrK~~kgr~~---g~~~~~~~l~fG~y----GL~a~e~g~it~~qiEaaR~~i~R~lkk~g-----kiwirv~P~ 72 (138)
|.+|+ ++|.+|-.. ..-.-||...+++| .|+|+|+++|+++||||||++|+|+|++.+ ++|||+|||
T Consensus 12 ~~ytr-~~yi~gvP~~kI~~f~mGn~~a~~~f~~~~~L~a~e~~~I~~~alEAaR~ai~r~l~k~gG~~~y~~~irvfP~ 90 (157)
T 1ffk_F 12 PAYTR-REYISGIPGKGIAQFKMGNNGAGPTYPAQVENVVEKPVQIRHNALEAARNAANRFVQNSGAAANYKFRIRKFPF 90 (157)
T ss_pred CCCCC-CCCCCCCCCCCCEECCCCCCCCCCCCCEEEEEEECCCCEECHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCC
T ss_conf 89864-23358999530053245565335778817999986652224899999999999999986275652799996996
Q ss_pred CEEEEECCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCHHHHHHHHHHHHHHCCCEEEEEEEECC
Q ss_conf 607862154400144788110699832150899974979999999999985438951799998629
Q gi|254780254|r 73 VPVTAKPTEVRMGKGKGNVEKWVCRVKPGRILFEIDGVSEEVARRAFRLGAAKLSVVTKFIQRVVE 138 (138)
Q Consensus 73 ~pvTkKp~e~RMGkGKG~~~~wv~~Vk~G~ilfEi~gi~~~~a~~al~~a~~KLP~k~k~i~k~~~ 138 (138)
+|++++ .|+|||+|||++++|||+|++|++|||+.++++++|++||++|++|||++|+|+++.++
T Consensus 91 ~~~r~~-~~~rMg~gkGk~~~~~ArVk~G~iifei~~~~~~~ak~Al~~a~~KLp~~~kI~s~p~~ 155 (157)
T 1ffk_F 91 HVIREQ-DGDGMRAPFGKSVGTAARSHGANHDFIAWVNPDPAVEFAWRRAYMKVTPTVNIDSSPAG 155 (157)
T ss_pred HHHCCC-CCCCCCCCCCCCCEEEEEECCCCEEEEEEECCHHHHHHHHHHHHCCCCCCEEEEECCCC
T ss_conf 241225-65555666677767999978998899998257899999999973559996599851588