HHsearch results for GI: 254780254 and protein with PDBid: 1vq8_H

>1vq8_H 50S ribosomal protein L10E; ribosome 50S, protein-protein complex, RNA-RNA complex, protein-RNA complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.41.4.1 PDB: 1vq4_H* 1vq5_H* 1vq6_H* 1vq7_H* 1s72_H* 1vq9_H* 1vqk_H* 1vql_H* 1vqm_H* 1vqn_H* 1vqo_H* 1vqp_H* 2otj_H* 2otl_H* 2qa4_H* 2qex_H* 1yhq_H* 1yi2_H* 1yij_H* 1yit_H* ...
Probab=100.00  E-value=2.1e-36  Score=227.46  Aligned_cols=111  Identities=19%  Similarity=0.231  Sum_probs=99.9

Q ss_pred             CCCHH-HCCEEECCCEEECHHHHHHHHHHHHHHCCCC------CEEEEEECCCCEEEEECC---------CCCCCCCCCC
Q ss_conf             31213-1032740531325999999999999742678------468987549860786215---------4400144788
Q gi|254780254|r   27 RICFG-NFALKAQEANRIGSSEIEAARRAISRGMKRA------GRVWICVFPDVPVTAKPT---------EVRMGKGKGN   90 (138)
Q Consensus        27 ~l~fG-~yGL~a~e~g~it~~qiEaaR~~i~R~lkk~------gkiwirv~P~~pvTkKp~---------e~RMGkGKG~   90 (138)
                      ...|. .+.|+++|+++|+++||||||++++|+|++.      +++|||+|||+|||.+|.         |+|||+|||+
T Consensus        40 ~~~f~~~~~L~a~e~~~i~~~~iEAaR~a~~r~~~k~~Gk~g~~~~~irvfP~~~~~~kp~~~~agAdr~~~gM~~~~Gk  119 (171)
T 1vq8_H           40 ADDYPVQISLIVEETVQLRHGSLEASRLSANRHLIKELGEEGDYKMTLRKFPHQVLRENKQATGAGADRVSDGMRAAFGK  119 (171)
T ss_dssp             STTCSEEEEEEESSCEEEEHHHHHHHHHHHHHHHHHHHCTTCSCEEEECCCCCEEEEECC-----------CCSTTCCCE
T ss_pred             CCCCCEEEEEEECCCCEECHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCEEEECHHHHHHHHHHHCCCCCCCCCC
T ss_conf             56677489999877610458999999999999988752866760699995798103505445321110012366777788


Q ss_pred             CCEEEEEECCCEEEEEECCCCH--HHHHHHHHHHHHHCCCEEEEEEEEC
Q ss_conf             1106998321508999749799--9999999998543895179999862
Q gi|254780254|r   91 VEKWVCRVKPGRILFEIDGVSE--EVARRAFRLGAAKLSVVTKFIQRVV  137 (138)
Q Consensus        91 ~~~wv~~Vk~G~ilfEi~gi~~--~~a~~al~~a~~KLP~k~k~i~k~~  137 (138)
                      +++|||+|++|+||||++++++  +.|++||++|++|||++|+||....
T Consensus       120 p~~~aArVk~G~vlfei~~~~~~~~~akeALr~A~~KLP~ktkIvv~~~  168 (171)
T 1vq8_H          120 IVGTAARVQAGEQLFTAYCNVEDAEHVKEAFRRAYNKITPSCRIDSSPA  168 (171)
T ss_dssp             EEEEEEEECTTCEEEEEEECTTTHHHHHHHHHHHGGGSSSCEEEEECSC
T ss_pred             CCEEEEEECCCCEEEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEEEC
T ss_conf             5579999538988999972431489999999987432999879999757