HHSEARCH alignment of GI: 254780254 and SCOP domain: d2gyck1

Alignment
>d2gyck1 d.41.4.2 (K:3-133) Ribosomal protein L16p {Escherichia coli [TaxId: 562]}
Probab=100.00  E-value=0  Score=356.12  Aligned_cols=131  Identities=56%  Similarity=1.002  Sum_probs=128.3

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCEEECCCEEECHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEEECCCCC
Q ss_conf             88775510678989723477875312131032740531325999999999999742678468987549860786215440
Q gi|254780254|r    4 QPKNTKYPKQFKGRIKGVAKGGSRICFGNFALKAQEANRIGSSEIEAARRAISRGMKRAGRVWICVFPDVPVTAKPTEVR   83 (138)
Q Consensus         4 ~Pk~~KyrK~~kgr~~g~~~~~~~l~fG~yGL~a~e~g~it~~qiEaaR~~i~R~lkk~gkiwirv~P~~pvTkKp~e~R   83 (138)
                      |||+|||||+||||++|.+ +++.|+||+|||+|+|+|+||++||||||++|+|+|+++|++|||+|||+|||+||+|+|
T Consensus         1 qPkrtK~rK~~kgr~~g~~-~g~~l~~G~yGL~ale~g~it~~qiEa~R~~i~R~lkr~gk~wirifP~~pvTkKp~e~R   79 (131)
T d2gyck1           1 QPKRTKFRKMHKGRNRGLA-QGTDVSFGSFGLKAVGRGRLTARQIEAARRAMTRAVKRQGKIWIRVFPDKPITEKPLAVR   79 (131)
T ss_dssp             CCCCCCSSCCCCCCSCCCC-CSCCSSCCCCCCEEESCEEEEHHHHHHHHHHHHTTCTTCCCEEECCCCCBCCCBCCSSCS
T ss_pred             CCCCCCCCCCCCCCCCCCC-CCCEEEEEEEEEEECCCCEECHHHHHHHHHHHHHHHHHCCEEEEEECCCEEEEECCCCCE
T ss_conf             9897764577699986667-685371005235866573466999999999999864107669998538688982434423


Q ss_pred             CCCCCCCCCEEEEEECCCEEEEEECCCCHHHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf             0144788110699832150899974979999999999985438951799998
Q gi|254780254|r   84 MGKGKGNVEKWVCRVKPGRILFEIDGVSEEVARRAFRLGAAKLSVVTKFIQR  135 (138)
Q Consensus        84 MGkGKG~~~~wv~~Vk~G~ilfEi~gi~~~~a~~al~~a~~KLP~k~k~i~k  135 (138)
                      ||+|||++|||||+|+||+||||++|+++++|++||++|++|||++|+||+|
T Consensus        80 MGkGKG~~~~wva~Vk~G~ilfEi~gv~e~~a~~al~~aa~KLP~k~k~i~k  131 (131)
T d2gyck1          80 MGKGKGNVEYWVALIQPGKVLYEMDGVPEELAREAFKLAAAKLPIKTTFVTK  131 (131)
T ss_dssp             SCCCBCCSCCCEEEECTEEECEEECCCSCCSSHHHHHHHTTTSSSCBCCCCC
T ss_pred             ECCCCCCCCEEEEEECCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf             0377688726899964897999975899999999999998618986899869


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: alpha/beta-Hammerhead
superfamily: Ribosomal protein L16p/L10e
family: Ribosomal protein L16p
domain: Ribosomal protein L16p
species: Escherichia coli [TaxId: 562]