HHSEARCH alignment of GI: 254780254 and SCOP domain: d2j01q1

Alignment
>d2j01q1 d.41.4.2 (Q:6-141) Ribosomal protein L16p {Thermus thermophilus [TaxId: 274]}
Probab=100.00  E-value=0  Score=346.36  Aligned_cols=131  Identities=50%  Similarity=0.853  Sum_probs=129.4

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCHHHCCEEECCCEEECHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEEECCCCCCCC
Q ss_conf             75510678989723477875312131032740531325999999999999742678468987549860786215440014
Q gi|254780254|r    7 NTKYPKQFKGRIKGVAKGGSRICFGNFALKAQEANRIGSSEIEAARRAISRGMKRAGRVWICVFPDVPVTAKPTEVRMGK   86 (138)
Q Consensus         7 ~~KyrK~~kgr~~g~~~~~~~l~fG~yGL~a~e~g~it~~qiEaaR~~i~R~lkk~gkiwirv~P~~pvTkKp~e~RMGk   86 (138)
                      ||||||+||||++|.++++|.|.||+|||+|+|+|+||++||||||++|+|+|+++|++|||||||.|||+||+|+|||+
T Consensus         1 rtKyrK~~kgr~~g~~~~~~~l~fG~yGL~a~~~g~it~~qiEa~R~~i~r~lk~~gk~wiri~P~~pvTkKp~e~RMGk   80 (136)
T d2j01q1           1 RMKYRKQQRGRLKGATKGGDYVAFGDYGLVALEPAWITAQQIEAARVAMVRHFRRGGKIFIRIFPDKPYTKKPLEVRMGK   80 (136)
T ss_dssp             CCSSCCCCCCCCCSCTTSCCCCCSSSSEEEESSCEEEEHHHHHHHHHHHHHHTSSCCEEEECCCCCEEECCCCSSCCSSS
T ss_pred             CCCCCCCCCCCCCCCCCCCCEEECCCCEEEEEECCEECHHHHHHHHHHHHHHCCCCCEEEEEECCCEEEEEECCCCCCCC
T ss_conf             99767788999877678877860264100330751885999999999998653558769998548757875025650368


Q ss_pred             CCCCCCEEEEEECCCEEEEEECCCCHHHHHHHHHHHHHHCCCEEEEEEEEC
Q ss_conf             478811069983215089997497999999999998543895179999862
Q gi|254780254|r   87 GKGNVEKWVCRVKPGRILFEIDGVSEEVARRAFRLGAAKLSVVTKFIQRVV  137 (138)
Q Consensus        87 GKG~~~~wv~~Vk~G~ilfEi~gi~~~~a~~al~~a~~KLP~k~k~i~k~~  137 (138)
                      |||+|||||++|+||+||||++|+++++|++||++|++|||++|+||+|++
T Consensus        81 GKG~i~~wv~~Vk~G~ilfEi~gv~~~~a~~al~~a~~KLP~k~k~V~r~~  131 (136)
T d2j01q1          81 GKGNVEGYVAVVKPGRVMFEVAGVTEEQAMEALRIAGHKLPIKTKIVRRDA  131 (136)
T ss_dssp             CSCCTTEEEEEECTTCEEEEEESSCHHHHHHHHHHHHHHSSSCEEEECCSC
T ss_pred             CCCCCCEEEEEECCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf             989850479996389599997698999999999999860898579998375


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: alpha/beta-Hammerhead
superfamily: Ribosomal protein L16p/L10e
family: Ribosomal protein L16p
domain: Ribosomal protein L16p
species: Thermus thermophilus [TaxId: 274]