Query gi|254780254|ref|YP_003064667.1| 50S ribosomal protein L16 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 138
No_of_seqs 112 out of 1127
Neff 5.2
Searched_HMMs 13730
Date Tue May 24 10:05:52 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780254.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2gyck1 d.41.4.2 (K:3-133) Rib 100.0 0 0 356.1 7.0 131 4-135 1-131 (131)
2 d2j01q1 d.41.4.2 (Q:6-141) Rib 100.0 0 0 346.4 13.7 131 7-137 1-131 (136)
3 d1jj2h_ d.41.4.1 (H:) Ribosoma 100.0 1.4E-39 1E-43 244.3 10.8 114 24-137 33-164 (167)
4 d1vqoh1 d.41.4.1 (H:1-163) Rib 100.0 3.2E-37 2.3E-41 230.8 11.1 100 33-132 47-163 (163)
5 d2pa2a1 d.41.4.1 (A:40-176) Ri 100.0 1.7E-36 1.2E-40 226.7 9.9 102 33-134 11-128 (137)
6 d1cmxa_ d.3.1.6 (A:) Ubiquitin 36.7 12 0.00085 16.1 2.7 21 90-110 158-178 (229)
7 d1xd3a_ d.3.1.6 (A:) Ubiquitin 35.3 12 0.00087 16.0 2.6 21 90-110 165-185 (229)
8 d2f0aa1 b.36.1.1 (A:251-342) S 33.8 14 0.001 15.6 3.1 41 95-135 45-90 (92)
9 d2cssa1 b.36.1.1 (A:8-115) Reg 33.6 14 0.001 15.6 2.7 42 89-130 57-103 (108)
10 d1qava_ b.36.1.1 (A:) Syntroph 29.7 3.9 0.00029 18.8 -0.7 43 89-131 40-87 (90)
11 d2fcfa1 b.36.1.1 (A:1148-1243) 29.1 6 0.00044 17.7 0.2 37 90-126 47-88 (96)
12 d1rgra_ b.36.1.1 (A:) Synaptic 27.6 9.3 0.00068 16.6 1.0 37 90-126 42-83 (93)
13 d2etla1 d.3.1.6 (A:1-223) Ubiq 26.4 19 0.0014 14.8 2.6 22 89-110 157-178 (223)
14 d1v5qa_ b.36.1.1 (A:) Glutamat 25.6 20 0.0015 14.8 3.3 42 91-132 57-103 (122)
15 d1x45a1 b.36.1.1 (A:8-92) Amyl 25.1 12 0.0009 15.9 1.2 43 90-132 37-84 (85)
16 d1ihja_ b.36.1.1 (A:) Inad {Fr 24.4 9.4 0.00068 16.6 0.5 36 90-125 46-86 (94)
17 d1ub0a_ c.72.1.2 (A:) 4-amino- 24.2 7.3 0.00053 17.3 -0.1 10 42-51 133-142 (258)
18 d1ozia_ b.36.1.1 (A:) Phosphat 22.0 24 0.0017 14.3 2.2 29 97-125 55-88 (99)
19 d1gtda_ d.284.1.1 (A:) PurS su 21.4 24 0.0018 14.3 4.3 32 95-126 33-65 (82)
20 d1wf7a_ b.36.1.1 (A:) Enigma h 20.4 20 0.0014 14.8 1.5 31 96-126 45-80 (103)
No 1
>d2gyck1 d.41.4.2 (K:3-133) Ribosomal protein L16p {Escherichia coli [TaxId: 562]}
Probab=100.00 E-value=0 Score=356.12 Aligned_cols=131 Identities=56% Similarity=1.002 Sum_probs=128.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCEEECCCEEECHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEEECCCCC
Q ss_conf 88775510678989723477875312131032740531325999999999999742678468987549860786215440
Q gi|254780254|r 4 QPKNTKYPKQFKGRIKGVAKGGSRICFGNFALKAQEANRIGSSEIEAARRAISRGMKRAGRVWICVFPDVPVTAKPTEVR 83 (138)
Q Consensus 4 ~Pk~~KyrK~~kgr~~g~~~~~~~l~fG~yGL~a~e~g~it~~qiEaaR~~i~R~lkk~gkiwirv~P~~pvTkKp~e~R 83 (138)
|||+|||||+||||++|.+ +++.|+||+|||+|+|+|+||++||||||++|+|+|+++|++|||+|||+|||+||+|+|
T Consensus 1 qPkrtK~rK~~kgr~~g~~-~g~~l~~G~yGL~ale~g~it~~qiEa~R~~i~R~lkr~gk~wirifP~~pvTkKp~e~R 79 (131)
T d2gyck1 1 QPKRTKFRKMHKGRNRGLA-QGTDVSFGSFGLKAVGRGRLTARQIEAARRAMTRAVKRQGKIWIRVFPDKPITEKPLAVR 79 (131)
T ss_dssp CCCCCCSSCCCCCCSCCCC-CSCCSSCCCCCCEEESCEEEEHHHHHHHHHHHHTTCTTCCCEEECCCCCBCCCBCCSSCS
T ss_pred CCCCCCCCCCCCCCCCCCC-CCCEEEEEEEEEEECCCCEECHHHHHHHHHHHHHHHHHCCEEEEEECCCEEEEECCCCCE
T ss_conf 9897764577699986667-685371005235866573466999999999999864107669998538688982434423
Q ss_pred CCCCCCCCCEEEEEECCCEEEEEECCCCHHHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf 0144788110699832150899974979999999999985438951799998
Q gi|254780254|r 84 MGKGKGNVEKWVCRVKPGRILFEIDGVSEEVARRAFRLGAAKLSVVTKFIQR 135 (138)
Q Consensus 84 MGkGKG~~~~wv~~Vk~G~ilfEi~gi~~~~a~~al~~a~~KLP~k~k~i~k 135 (138)
||+|||++|||||+|+||+||||++|+++++|++||++|++|||++|+||+|
T Consensus 80 MGkGKG~~~~wva~Vk~G~ilfEi~gv~e~~a~~al~~aa~KLP~k~k~i~k 131 (131)
T d2gyck1 80 MGKGKGNVEYWVALIQPGKVLYEMDGVPEELAREAFKLAAAKLPIKTTFVTK 131 (131)
T ss_dssp SCCCBCCSCCCEEEECTEEECEEECCCSCCSSHHHHHHHTTTSSSCBCCCCC
T ss_pred ECCCCCCCCEEEEEECCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 0377688726899964897999975899999999999998618986899869
No 2
>d2j01q1 d.41.4.2 (Q:6-141) Ribosomal protein L16p {Thermus thermophilus [TaxId: 274]}
Probab=100.00 E-value=0 Score=346.36 Aligned_cols=131 Identities=50% Similarity=0.853 Sum_probs=129.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHCCEEECCCEEECHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEEECCCCCCCC
Q ss_conf 75510678989723477875312131032740531325999999999999742678468987549860786215440014
Q gi|254780254|r 7 NTKYPKQFKGRIKGVAKGGSRICFGNFALKAQEANRIGSSEIEAARRAISRGMKRAGRVWICVFPDVPVTAKPTEVRMGK 86 (138)
Q Consensus 7 ~~KyrK~~kgr~~g~~~~~~~l~fG~yGL~a~e~g~it~~qiEaaR~~i~R~lkk~gkiwirv~P~~pvTkKp~e~RMGk 86 (138)
||||||+||||++|.++++|.|.||+|||+|+|+|+||++||||||++|+|+|+++|++|||||||.|||+||+|+|||+
T Consensus 1 rtKyrK~~kgr~~g~~~~~~~l~fG~yGL~a~~~g~it~~qiEa~R~~i~r~lk~~gk~wiri~P~~pvTkKp~e~RMGk 80 (136)
T d2j01q1 1 RMKYRKQQRGRLKGATKGGDYVAFGDYGLVALEPAWITAQQIEAARVAMVRHFRRGGKIFIRIFPDKPYTKKPLEVRMGK 80 (136)
T ss_dssp CCSSCCCCCCCCCSCTTSCCCCCSSSSEEEESSCEEEEHHHHHHHHHHHHHHTSSCCEEEECCCCCEEECCCCSSCCSSS
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCEEEEEECCEECHHHHHHHHHHHHHHCCCCCEEEEEECCCEEEEEECCCCCCCC
T ss_conf 99767788999877678877860264100330751885999999999998653558769998548757875025650368
Q ss_pred CCCCCCEEEEEECCCEEEEEECCCCHHHHHHHHHHHHHHCCCEEEEEEEEC
Q ss_conf 478811069983215089997497999999999998543895179999862
Q gi|254780254|r 87 GKGNVEKWVCRVKPGRILFEIDGVSEEVARRAFRLGAAKLSVVTKFIQRVV 137 (138)
Q Consensus 87 GKG~~~~wv~~Vk~G~ilfEi~gi~~~~a~~al~~a~~KLP~k~k~i~k~~ 137 (138)
|||+|||||++|+||+||||++|+++++|++||++|++|||++|+||+|++
T Consensus 81 GKG~i~~wv~~Vk~G~ilfEi~gv~~~~a~~al~~a~~KLP~k~k~V~r~~ 131 (136)
T d2j01q1 81 GKGNVEGYVAVVKPGRVMFEVAGVTEEQAMEALRIAGHKLPIKTKIVRRDA 131 (136)
T ss_dssp CSCCTTEEEEEECTTCEEEEEESSCHHHHHHHHHHHHHHSSSCEEEECCSC
T ss_pred CCCCCCEEEEEECCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf 989850479996389599997698999999999999860898579998375
No 3
>d1jj2h_ d.41.4.1 (H:) Ribosomal protein L10e {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=100.00 E-value=1.4e-39 Score=244.26 Aligned_cols=114 Identities=18% Similarity=0.119 Sum_probs=107.1
Q ss_pred CCCCCCHHHC----CEEECCCEEECHHHHHHHHHHHHHHCCC-----CCEEEEEECCCCEEEEEC---------CCCCCC
Q ss_conf 8753121310----3274053132599999999999974267-----846898754986078621---------544001
Q gi|254780254|r 24 GGSRICFGNF----ALKAQEANRIGSSEIEAARRAISRGMKR-----AGRVWICVFPDVPVTAKP---------TEVRMG 85 (138)
Q Consensus 24 ~~~~l~fG~y----GL~a~e~g~it~~qiEaaR~~i~R~lkk-----~gkiwirv~P~~pvTkKp---------~e~RMG 85 (138)
-||...+++| +|+|+|+++|+++||||||++++|+|++ ++++|||+|||+|+|.+| +|+|||
T Consensus 33 mGn~~a~~~f~~~~~L~a~e~~qi~~~aiEAaR~~~nr~l~~~~g~~~~~~~irvfP~~~ir~kp~~~~agAdr~~~rMg 112 (167)
T d1jj2h_ 33 MGNNGAGPTYPAQVELVVEKPVQIRHNALEAARVAANRYVQNSGAAANYKFRIRKFPFHVIRENKAAAAAAAAAAADGMR 112 (167)
T ss_dssp EECTTSCSCCSEEEEEEECSCEEEEHHHHHHHHHHHHTTSTTSCTTCSCEEEECCCCCEEEEECC-----------CCSS
T ss_pred CCCCCCCCCCCEEEEEEECCCEEECHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCEEECCCCCCCCCCCCCCCCC
T ss_conf 75752147677589999855435638899999999999999850535776899856873077354001356543002456
Q ss_pred CCCCCCCEEEEEECCCEEEEEECCCCHHHHHHHHHHHHHHCCCEEEEEEEEC
Q ss_conf 4478811069983215089997497999999999998543895179999862
Q gi|254780254|r 86 KGKGNVEKWVCRVKPGRILFEIDGVSEEVARRAFRLGAAKLSVVTKFIQRVV 137 (138)
Q Consensus 86 kGKG~~~~wv~~Vk~G~ilfEi~gi~~~~a~~al~~a~~KLP~k~k~i~k~~ 137 (138)
+|||++++|||+|++|+||||++++++++|++||++|++|||++|+|+.+..
T Consensus 113 ~gkGkp~~~aArVk~G~ilfei~~~~e~~akeALr~A~~KLP~~~kI~~~p~ 164 (167)
T d1jj2h_ 113 APFGKPVGTAARVHGANHIFIAWVNPDPNVEEAWRRAKMKVTPTINIDSSPA 164 (167)
T ss_dssp SCCCEEEEEEEEECTTCEEEEEEESSCCCHHHHHHHHTTSSSSCEEEEECSC
T ss_pred CCCCCCCEEEEEECCCCEEEEEECCCHHHHHHHHHHHCCCCCCCEEEEECCC
T ss_conf 7778863899997489889999268889999999983577999789997178
No 4
>d1vqoh1 d.41.4.1 (H:1-163) Ribosomal protein L10e {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=100.00 E-value=3.2e-37 Score=230.76 Aligned_cols=100 Identities=20% Similarity=0.273 Sum_probs=93.8
Q ss_pred CCEEECCCEEECHHHHHHHHHHHHHHCCC------CCEEEEEECCCCEEEEECC---------CCCCCCCCCCCCEEEEE
Q ss_conf 03274053132599999999999974267------8468987549860786215---------44001447881106998
Q gi|254780254|r 33 FALKAQEANRIGSSEIEAARRAISRGMKR------AGRVWICVFPDVPVTAKPT---------EVRMGKGKGNVEKWVCR 97 (138)
Q Consensus 33 yGL~a~e~g~it~~qiEaaR~~i~R~lkk------~gkiwirv~P~~pvTkKp~---------e~RMGkGKG~~~~wv~~ 97 (138)
++|+++|+++|+++||||||++++|+|++ .+++|||||||+|||++|. |+|||+|||++++|||+
T Consensus 47 ~~L~a~e~~~i~~~~iEAaR~a~~r~l~k~~G~~~~~~~~irvfP~~~v~~kp~~~~agadrl~~~Mg~gkG~p~~~aAr 126 (163)
T d1vqoh1 47 ISLIVEETVQLRHGSLEASRLSANRHLIKELGEEGDYKMTLRKFPHQVLRENKQATGAGADRVSDGMRAAFGKIVGTAAR 126 (163)
T ss_dssp EEEEESSCEEEEHHHHHHHHHHHHHHHHHHHCTTCSCEEEECCCCCEEEEECC-----------CCSTTCCCEEEEEEEE
T ss_pred EEEEECCCCEECHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCEEECCHHHHHCCCCCCCCCCCCCCCCCCEEEEE
T ss_conf 99987366024389999999999750144327556606999956761055274452013001034556787885389999
Q ss_pred ECCCEEEEEECCCC--HHHHHHHHHHHHHHCCCEEEE
Q ss_conf 32150899974979--999999999985438951799
Q gi|254780254|r 98 VKPGRILFEIDGVS--EEVARRAFRLGAAKLSVVTKF 132 (138)
Q Consensus 98 Vk~G~ilfEi~gi~--~~~a~~al~~a~~KLP~k~k~ 132 (138)
|++|+||||+.+++ .+.|++||++|++|||++|+|
T Consensus 127 Vk~G~ilfei~~~~~~~~~akeALr~A~~KLP~~tkI 163 (163)
T d1vqoh1 127 VQAGEQLFTAYCNVEDAEHVKEAFRRAYNKITPSCRI 163 (163)
T ss_dssp ECTTCEEEEEEECSTTHHHHHHHHHHHGGGSSSCEEE
T ss_pred ECCCCEEEEEEECCCCHHHHHHHHHHHHCCCCCCEEC
T ss_conf 8799899999742316899999999873428996079
No 5
>d2pa2a1 d.41.4.1 (A:40-176) Ribosomal protein L10e {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00 E-value=1.7e-36 Score=226.65 Aligned_cols=102 Identities=21% Similarity=0.197 Sum_probs=95.2
Q ss_pred CCEEECCCEEECHHHHHHHHHHHHHHC-----CCCCEEEEEECCCCEEEEECCCCCCC---------CCCCCCCEEEEEE
Q ss_conf 032740531325999999999999742-----67846898754986078621544001---------4478811069983
Q gi|254780254|r 33 FALKAQEANRIGSSEIEAARRAISRGM-----KRAGRVWICVFPDVPVTAKPTEVRMG---------KGKGNVEKWVCRV 98 (138)
Q Consensus 33 yGL~a~e~g~it~~qiEaaR~~i~R~l-----kk~gkiwirv~P~~pvTkKp~e~RMG---------kGKG~~~~wv~~V 98 (138)
..|+++|+++|+++||||||++|+|+| ++++++|||+|||+|+|.||.++||| +|||++++|||+|
T Consensus 11 ~~L~~~e~~~i~~~~iEAaR~ai~r~l~k~~gk~~~~~~irvfP~~~l~~k~~~~~~Gadr~~~gMrkgkG~p~~waArV 90 (137)
T d2pa2a1 11 GHMVSDEYEQLSSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARV 90 (137)
T ss_dssp EEEEECSCEEEEHHHHHHHHHHHHHHHHHHHCTTSEEEEECCSCC-----------------------------CCEEEE
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEECCHHCCCCCCCCCCCCCCCCCCCCEEEEEE
T ss_conf 99998676321688999999999998887526577479999768830660601202565421223446768855899995
Q ss_pred CCCEEEEEECCC--CHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 215089997497--999999999998543895179999
Q gi|254780254|r 99 KPGRILFEIDGV--SEEVARRAFRLGAAKLSVVTKFIQ 134 (138)
Q Consensus 99 k~G~ilfEi~gi--~~~~a~~al~~a~~KLP~k~k~i~ 134 (138)
++|+||||+++. +.+.|++||++|++|||++|+|+-
T Consensus 91 k~G~ilfEi~g~~~~~~~Ak~ALr~Aa~KLP~~tkIvv 128 (137)
T d2pa2a1 91 HIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHI 128 (137)
T ss_dssp CTTBEEEEEEECGGGHHHHHHHHHHHGGGSSSCEEEEE
T ss_pred CCCCEEEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEE
T ss_conf 38968999850255899999999987312899679999
No 6
>d1cmxa_ d.3.1.6 (A:) Ubiquitin carboxyl-terminal hydrolase UCH-l3 {Synthetic, based on Saccharomyces cerevisiae sequence}
Probab=36.73 E-value=12 Score=16.09 Aligned_cols=21 Identities=24% Similarity=0.406 Sum_probs=18.8
Q ss_pred CCCEEEEEECCCEEEEEECCC
Q ss_conf 811069983215089997497
Q gi|254780254|r 90 NVEKWVCRVKPGRILFEIDGV 110 (138)
Q Consensus 90 ~~~~wv~~Vk~G~ilfEi~gi 110 (138)
...|+||.|+.+--|+|++|.
T Consensus 158 ~~~HFIafV~~~G~lyELDG~ 178 (229)
T d1cmxa_ 158 TNLHYITYVEENGGIFELDGR 178 (229)
T ss_dssp CSEEEEEEEECSSEEEEECTT
T ss_pred CCEEEEEEEEECCEEEECCCC
T ss_conf 670589999779989983799
No 7
>d1xd3a_ d.3.1.6 (A:) Ubiquitin carboxyl-terminal hydrolase UCH-l3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=35.25 E-value=12 Score=16.02 Aligned_cols=21 Identities=24% Similarity=0.344 Sum_probs=18.9
Q ss_pred CCCEEEEEECCCEEEEEECCC
Q ss_conf 811069983215089997497
Q gi|254780254|r 90 NVEKWVCRVKPGRILFEIDGV 110 (138)
Q Consensus 90 ~~~~wv~~Vk~G~ilfEi~gi 110 (138)
.-.|+||.|..+--|+|++|.
T Consensus 165 ~~~HFI~fV~~~G~lyELDG~ 185 (229)
T d1xd3a_ 165 VDLHFIALVHVDGHLYELDGR 185 (229)
T ss_dssp CCEEEEEEEEETTEEEEECTT
T ss_pred CCEEEEEEEEECCEEEECCCC
T ss_conf 451389988539999985699
No 8
>d2f0aa1 b.36.1.1 (A:251-342) Segment polarity protein dishevelled homolog Dvl-2 {African clawed frog (Xenopus laevis) [TaxId: 8355]}
Probab=33.83 E-value=14 Score=15.59 Aligned_cols=41 Identities=22% Similarity=0.377 Sum_probs=28.4
Q ss_pred EEEECCCEEEEEECCC-----CHHHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf 9983215089997497-----9999999999985438951799998
Q gi|254780254|r 95 VCRVKPGRILFEIDGV-----SEEVARRAFRLGAAKLSVVTKFIQR 135 (138)
Q Consensus 95 v~~Vk~G~ilfEi~gi-----~~~~a~~al~~a~~KLP~k~k~i~k 135 (138)
.-++++|..|++++|. +.+.|.+.|+.+..+-+.-+-.|.|
T Consensus 45 ~G~L~~GD~Il~VNg~~l~~~s~~eav~llk~~~~~~~~v~L~V~R 90 (92)
T d2f0aa1 45 DGRIEPGDMLLQVNDINFENMSNDDAVRVLRDIVHKPGPIVLTVAK 90 (92)
T ss_dssp HCCCCTTCEEEEETTEECTTCCHHHHHHHHHHHHHSSSCEEEEEEC
T ss_pred CCCCCCCCEEEEECCEECCCCCHHHHHHHHHHCCCCCCCEEEEEEE
T ss_conf 3997783199989999988998999999998656789709999995
No 9
>d2cssa1 b.36.1.1 (A:8-115) Regulating synaptic membrane exocytosis protein 1, RIMS1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=33.60 E-value=14 Score=15.63 Aligned_cols=42 Identities=17% Similarity=0.234 Sum_probs=29.1
Q ss_pred CCCCEEEEEECCCEEEEEECCC-----CHHHHHHHHHHHHHHCCCEE
Q ss_conf 8811069983215089997497-----99999999999854389517
Q gi|254780254|r 89 GNVEKWVCRVKPGRILFEIDGV-----SEEVARRAFRLGAAKLSVVT 130 (138)
Q Consensus 89 G~~~~wv~~Vk~G~ilfEi~gi-----~~~~a~~al~~a~~KLP~k~ 130 (138)
|++.+-.-.+++|..|.|++|. +.+.|.+.|+.+.....+..
T Consensus 57 gg~A~~~g~L~~GD~Il~VNg~~~~~~t~~ea~~~l~~~~~~~~v~l 103 (108)
T d2cssa1 57 GSLADVVGHLRAGDEVLEWNGKPLPGATNEEVYNIILESKSEPQVEI 103 (108)
T ss_dssp TSHHHHTSCCCTTCEEEEESSCBCTTSCHHHHHHHHHHGGGCSCEEE
T ss_pred CCCHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHHCCCCCEEEE
T ss_conf 98256348877589999999999889989999999985899988999
No 10
>d1qava_ b.36.1.1 (A:) Syntrophin {Mouse (Mus musculus) [TaxId: 10090]}
Probab=29.66 E-value=3.9 Score=18.80 Aligned_cols=43 Identities=14% Similarity=0.225 Sum_probs=28.4
Q ss_pred CCCCEEEEEECCCEEEEEECCC-----CHHHHHHHHHHHHHHCCCEEE
Q ss_conf 8811069983215089997497-----999999999998543895179
Q gi|254780254|r 89 GNVEKWVCRVKPGRILFEIDGV-----SEEVARRAFRLGAAKLSVVTK 131 (138)
Q Consensus 89 G~~~~wv~~Vk~G~ilfEi~gi-----~~~~a~~al~~a~~KLP~k~k 131 (138)
|++.+.+-.+.+|..|.+|+|. +.+.|.++|+.+...+-+..+
T Consensus 40 ~~~A~~~G~L~~GD~Il~INg~~v~~~~~~~~~~~l~~~~~~v~l~v~ 87 (90)
T d1qava_ 40 GLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVK 87 (90)
T ss_dssp TSHHHHTTCCCTTEEEEEETTEECTTCCHHHHHHHHHTCCSEEEEEEE
T ss_pred CCCEEECCCCCCCCEEEEECCEECCCCCHHHHHHHHHHCCCEEEEEEE
T ss_conf 982120798883489999999999999799999999819993999999
No 11
>d2fcfa1 b.36.1.1 (A:1148-1243) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=29.08 E-value=6 Score=17.73 Aligned_cols=37 Identities=30% Similarity=0.384 Sum_probs=25.8
Q ss_pred CCCEEEEEECCCEEEEEECCC-----CHHHHHHHHHHHHHHC
Q ss_conf 811069983215089997497-----9999999999985438
Q gi|254780254|r 90 NVEKWVCRVKPGRILFEIDGV-----SEEVARRAFRLGAAKL 126 (138)
Q Consensus 90 ~~~~wv~~Vk~G~ilfEi~gi-----~~~~a~~al~~a~~KL 126 (138)
++.+-+-.+++|..|.|++|. +.+.|.++|+.+...+
T Consensus 47 s~A~~~G~L~~GD~Il~VNg~~v~~~t~~ea~~~lk~~~~~v 88 (96)
T d2fcfa1 47 SPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPV 88 (96)
T ss_dssp SHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSSE
T ss_pred CHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCEE
T ss_conf 979974999689999999998988998999999998389919
No 12
>d1rgra_ b.36.1.1 (A:) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=27.60 E-value=9.3 Score=16.65 Aligned_cols=37 Identities=11% Similarity=0.147 Sum_probs=25.2
Q ss_pred CCCEEEEEECCCEEEEEECCC-----CHHHHHHHHHHHHHHC
Q ss_conf 811069983215089997497-----9999999999985438
Q gi|254780254|r 90 NVEKWVCRVKPGRILFEIDGV-----SEEVARRAFRLGAAKL 126 (138)
Q Consensus 90 ~~~~wv~~Vk~G~ilfEi~gi-----~~~~a~~al~~a~~KL 126 (138)
++.+-+-.+++|..|.|++|. +.+.|.++|+.+...+
T Consensus 42 g~A~~~G~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~v 83 (93)
T d1rgra_ 42 GAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIV 83 (93)
T ss_dssp SHHHHHCCCCTTCEEEEETTEECSSSCHHHHHHHHHHTTTEE
T ss_pred CHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCEE
T ss_conf 858950998857578999999988998999999998399979
No 13
>d2etla1 d.3.1.6 (A:1-223) Ubiquitin carboxyl-terminal hydrolase isozyme l1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.43 E-value=19 Score=14.84 Aligned_cols=22 Identities=18% Similarity=0.179 Sum_probs=19.5
Q ss_pred CCCCEEEEEECCCEEEEEECCC
Q ss_conf 8811069983215089997497
Q gi|254780254|r 89 GNVEKWVCRVKPGRILFEIDGV 110 (138)
Q Consensus 89 G~~~~wv~~Vk~G~ilfEi~gi 110 (138)
....|+||.|..+--|+|++|.
T Consensus 157 ~~~~HFI~fV~~~G~lyELDG~ 178 (223)
T d2etla1 157 KVNFHFILFNNVDGHLYELDGR 178 (223)
T ss_dssp CCCEEEEEEEEETTEEEEECTT
T ss_pred CCCEEEEEEEEECCEEEEECCC
T ss_conf 7545899999769979990378
No 14
>d1v5qa_ b.36.1.1 (A:) Glutamate receptor interacting protein {Mouse (Mus musculus) [TaxId: 10090]}
Probab=25.60 E-value=20 Score=14.75 Aligned_cols=42 Identities=17% Similarity=0.207 Sum_probs=29.7
Q ss_pred CCEEEEEECCCEEEEEECCC-----CHHHHHHHHHHHHHHCCCEEEE
Q ss_conf 11069983215089997497-----9999999999985438951799
Q gi|254780254|r 91 VEKWVCRVKPGRILFEIDGV-----SEEVARRAFRLGAAKLSVVTKF 132 (138)
Q Consensus 91 ~~~wv~~Vk~G~ilfEi~gi-----~~~~a~~al~~a~~KLP~k~k~ 132 (138)
+....-.+.+|..|.||+|. +.+.|.++|+.+.....+..+.
T Consensus 57 ~A~~~G~L~~GD~Il~INg~~v~~~~~~e~~~~lk~~~~~~~l~l~~ 103 (122)
T d1v5qa_ 57 PAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDSSITSKVTLEI 103 (122)
T ss_dssp HHHHSCCCCTTCCEEEETTEESSSSCHHHHHHHHHHHTTTTCEEEEE
T ss_pred HHHHHCCCCCCCEEEEECCCCCCCCCHHHHHHHHHCCCCCEEEEEEE
T ss_conf 89982899757798889999189998999999998189941899999
No 15
>d1x45a1 b.36.1.1 (A:8-92) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.10 E-value=12 Score=15.95 Aligned_cols=43 Identities=9% Similarity=0.097 Sum_probs=28.1
Q ss_pred CCCEEEEEECCCEEEEEECCC-----CHHHHHHHHHHHHHHCCCEEEE
Q ss_conf 811069983215089997497-----9999999999985438951799
Q gi|254780254|r 90 NVEKWVCRVKPGRILFEIDGV-----SEEVARRAFRLGAAKLSVVTKF 132 (138)
Q Consensus 90 ~~~~wv~~Vk~G~ilfEi~gi-----~~~~a~~al~~a~~KLP~k~k~ 132 (138)
++.+-.-.+++|..|.|++|. +.+.|.++|+.+.....+...+
T Consensus 37 g~A~~~G~l~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~~~v~L~V 84 (85)
T d1x45a1 37 GPAEKSGKLNIGDQIMSINGTSLVGLPLSTCQSIIKGLKNQSRVKLNI 84 (85)
T ss_dssp CHHHHHCSCCTTCEEEEETTEECTTCCHHHHHHHHHTTTTCSEEEEEE
T ss_pred CHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCCCEEEEEE
T ss_conf 989983999867998989999988998999999997599999799998
No 16
>d1ihja_ b.36.1.1 (A:) Inad {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=24.40 E-value=9.4 Score=16.63 Aligned_cols=36 Identities=17% Similarity=0.268 Sum_probs=24.6
Q ss_pred CCCEEEEEECCCEEEEEECCC-----CHHHHHHHHHHHHHH
Q ss_conf 811069983215089997497-----999999999998543
Q gi|254780254|r 90 NVEKWVCRVKPGRILFEIDGV-----SEEVARRAFRLGAAK 125 (138)
Q Consensus 90 ~~~~wv~~Vk~G~ilfEi~gi-----~~~~a~~al~~a~~K 125 (138)
++.+-.-.+++|..|.+++|. +.+.|.+.|+.+..+
T Consensus 46 s~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~ll~~~~~~ 86 (94)
T d1ihja_ 46 SPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEADFK 86 (94)
T ss_dssp SHHHHHCSCCTTCEEEEETTEECTTCCHHHHHHHHHHSCSE
T ss_pred CHHHHHCCCCHHCEEEEECCEECCCCCHHHHHHHHHCCCCE
T ss_conf 98998399980119998999997899899999999859997
No 17
>d1ub0a_ c.72.1.2 (A:) 4-amino-5-hydroxymethyl-2-methylpyrimidine phosphate kinase (HMP-phosphate kinase, ThiD) {Thermus thermophilus [TaxId: 274]}
Probab=24.22 E-value=7.3 Score=17.27 Aligned_cols=10 Identities=20% Similarity=0.345 Sum_probs=3.9
Q ss_pred EECHHHHHHH
Q ss_conf 3259999999
Q gi|254780254|r 42 RIGSSEIEAA 51 (138)
Q Consensus 42 ~it~~qiEaa 51 (138)
-||.|+.|++
T Consensus 133 iiTPN~~Ea~ 142 (258)
T d1ub0a_ 133 LVTPNRLEAE 142 (258)
T ss_dssp EECCBHHHHH
T ss_pred EECCCHHHHH
T ss_conf 2058788886
No 18
>d1ozia_ b.36.1.1 (A:) Phosphatase hPTP1e {Mouse (Mus musculus) [TaxId: 10090]}
Probab=21.99 E-value=24 Score=14.34 Aligned_cols=29 Identities=21% Similarity=0.403 Sum_probs=22.6
Q ss_pred EECCCEEEEEECCC-----CHHHHHHHHHHHHHH
Q ss_conf 83215089997497-----999999999998543
Q gi|254780254|r 97 RVKPGRILFEIDGV-----SEEVARRAFRLGAAK 125 (138)
Q Consensus 97 ~Vk~G~ilfEi~gi-----~~~~a~~al~~a~~K 125 (138)
.+++|..|.|++|. +.+.|.++|+.+...
T Consensus 55 ~L~~GD~Il~VNg~~v~~~s~~~a~~~lk~~~~~ 88 (99)
T d1ozia_ 55 RIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQV 88 (99)
T ss_dssp CCCTTCEEEEETTEECSSCCHHHHHHHHHHSCSE
T ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCE
T ss_conf 9975589988999986899899999998779986
No 19
>d1gtda_ d.284.1.1 (A:) PurS subunit of FGAM synthetase {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=21.42 E-value=24 Score=14.27 Aligned_cols=32 Identities=22% Similarity=0.251 Sum_probs=28.0
Q ss_pred EEEECCCEEE-EEECCCCHHHHHHHHHHHHHHC
Q ss_conf 9983215089-9974979999999999985438
Q gi|254780254|r 95 VCRVKPGRIL-FEIDGVSEEVARRAFRLGAAKL 126 (138)
Q Consensus 95 v~~Vk~G~il-fEi~gi~~~~a~~al~~a~~KL 126 (138)
+.-|+.|+.+ |+++.-+.+.|.+.....+.+|
T Consensus 33 v~~Vr~gK~~~l~i~~~~~e~a~~~v~~~c~~l 65 (82)
T d1gtda_ 33 VEDTDTTDVITFTMDEDSLEAVEREVEDMCQRL 65 (82)
T ss_dssp CEEEEEEEEEEEEECCSCHHHHHHHHHHHHHHT
T ss_pred CCEEEEEEEEEEEECCCCHHHHHHHHHHHHHHH
T ss_conf 413798789999972799899999999999987
No 20
>d1wf7a_ b.36.1.1 (A:) Enigma homolog ENH {Mouse (Mus musculus) [TaxId: 10090]}
Probab=20.44 E-value=20 Score=14.80 Aligned_cols=31 Identities=23% Similarity=0.464 Sum_probs=23.5
Q ss_pred EEECCCEEEEEECCC-----CHHHHHHHHHHHHHHC
Q ss_conf 983215089997497-----9999999999985438
Q gi|254780254|r 96 CRVKPGRILFEIDGV-----SEEVARRAFRLGAAKL 126 (138)
Q Consensus 96 ~~Vk~G~ilfEi~gi-----~~~~a~~al~~a~~KL 126 (138)
+.+++|..|++|+|. +.+.|.+.|+.+...+
T Consensus 45 ~~L~~GD~Il~INg~~v~~~t~~eav~li~~~~~~v 80 (103)
T d1wf7a_ 45 AHVRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSL 80 (103)
T ss_dssp TTCCTTCBEEEETTEECSSCCHHHHHHHHHHCSSEE
T ss_pred CCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCEE
T ss_conf 888778899989999889998999999997599869
Done!