RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780254|ref|YP_003064667.1| 50S ribosomal protein L16
[Candidatus Liberibacter asiaticus str. psy62]
(138 letters)
>gnl|CDD|181697 PRK09203, rplP, 50S ribosomal protein L16; Reviewed.
Length = 138
Score = 224 bits (575), Expect = 4e-60
Identities = 87/138 (63%), Positives = 102/138 (73%), Gaps = 1/138 (0%)
Query: 1 MLRQPKNTKYPKQFKGRIKGVAKGGSRICFGNFALKAQEANRIGSSEIEAARRAISRGMK 60
ML QPK TKY KQ KGR +G AK G+ + FG F LKA E I + +IEAAR A++R +K
Sbjct: 1 ML-QPKRTKYRKQHKGRNRGKAKRGNTVAFGEFGLKALEPGWITARQIEAARIAMTRHIK 59
Query: 61 RAGRVWICVFPDVPVTAKPTEVRMGKGKGNVEKWVCRVKPGRILFEIDGVSEEVARRAFR 120
R G+VWI +FPD PVT KP EVRMGKGKG+ E WV VKPGRILFEI GVSEE+AR A R
Sbjct: 60 RGGKVWIRIFPDKPVTKKPAEVRMGKGKGSPEYWVAVVKPGRILFEIAGVSEELAREALR 119
Query: 121 LGAAKLSVVTKFIQRVVE 138
L AAKL + TKF++R E
Sbjct: 120 LAAAKLPIKTKFVKRGEE 137
>gnl|CDD|130232 TIGR01164, rplP_bact, ribosomal protein L16, bacterial/organelle.
This model describes bacterial and organellar ribosomal
protein L16. The homologous protein of the eukaryotic
cytosol is designated L10.
Length = 126
Score = 171 bits (434), Expect = 8e-44
Identities = 74/125 (59%), Positives = 91/125 (72%)
Query: 4 QPKNTKYPKQFKGRIKGVAKGGSRICFGNFALKAQEANRIGSSEIEAARRAISRGMKRAG 63
PK TKY KQ +GR+KG AK G+ + FG + L+A E I + +IEAAR A++R +KR G
Sbjct: 2 SPKRTKYRKQHRGRMKGKAKRGNTVAFGEYGLQALEPGWITARQIEAARVAMTRYVKRGG 61
Query: 64 RVWICVFPDVPVTAKPTEVRMGKGKGNVEKWVCRVKPGRILFEIDGVSEEVARRAFRLGA 123
++WI +FPD P T KP E RMGKGKGN E WV VKPG+ILFEI GV EEVAR AFRL A
Sbjct: 62 KLWIRIFPDKPYTKKPLETRMGKGKGNPEYWVAVVKPGKILFEIAGVPEEVAREAFRLAA 121
Query: 124 AKLSV 128
+KL +
Sbjct: 122 SKLPI 126
>gnl|CDD|180815 PRK07058, PRK07058, acetate kinase; Provisional.
Length = 396
Score = 30.0 bits (68), Expect = 0.22
Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 5/58 (8%)
Query: 24 GGSRICFGNFALKAQEANRIGSSEIEAARRAISRGMKRAGRVWICVFPDVPVTAKPTE 81
G S + G F + EA RIG +I+ R + ++ G D+P+ A T+
Sbjct: 12 GSSTVKIGLFEVDGNEARRIGKGDIDFRRAPLRFHLRNGGETL-----DIPLKASVTD 64
>gnl|CDD|184938 PRK14975, PRK14975, bifunctional 3'-5' exonuclease/DNA polymerase;
Provisional.
Length = 553
Score = 29.6 bits (67), Expect = 0.27
Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 4/43 (9%)
Query: 47 EIEAARRAISRGMKRAGRVWICVFPDVPVTAKPTEV-RMGKGK 88
E E AI M+ AGR+ +F VP + V + K
Sbjct: 514 EAEEVAAAIEEAMEEAGRL---LFGPVPFPVEVAVVESYAEAK 553
>gnl|CDD|180083 PRK05441, murQ, N-acetylmuramic acid-6-phosphate etherase;
Reviewed.
Length = 299
Score = 29.0 bits (66), Expect = 0.47
Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 12/58 (20%)
Query: 82 VRMGKGKGNV--------EKWVCRVKPGRILFEIDGVSEEVARRAFRL--GAAKLSVV 129
+R+GK GN+ EK V R RI+ E GVS E A A G+ KL++V
Sbjct: 214 IRLGKVYGNLMVDVKATNEKLVDRAV--RIVMEATGVSREEAEAALEAADGSVKLAIV 269
>gnl|CDD|183710 PRK12737, gatY, tagatose-bisphosphate aldolase; Reviewed.
Length = 284
Score = 26.2 bits (58), Expect = 2.9
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 109 GVSEEVARRAFRLGAAKLSVVT 130
GV +E ++A LG K++V T
Sbjct: 212 GVPDEDVKKAISLGICKVNVAT 233
>gnl|CDD|162103 TIGR00913, 2A0310, amino acid permease (yeast).
Length = 478
Score = 26.1 bits (58), Expect = 3.3
Identities = 15/55 (27%), Positives = 21/55 (38%), Gaps = 5/55 (9%)
Query: 16 GRIKGVAKGGSRICFGNFALKAQEANRIGSSEIEAARRAISRGMKRAGRVWICVF 70
GR KGV S F+ E + + E R++I R KR W +
Sbjct: 194 GRFKGVC---SVFVTAAFSFGGTELVALTAGEAANPRKSIPRAAKRT--FWRILV 243
>gnl|CDD|151205 pfam10712, NAD-GH, NAD-specific glutamate dehydrogenase. The
members of this are annotated as being NAD-specific
glutamate dehydrogenase encoded in antisense gene pair
with DnaK-J. However, this could not be confirmed.
Length = 576
Score = 25.7 bits (57), Expect = 3.8
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 102 RILFEIDGVSEEVARRAFRLGAAKLSV-VTKFIQRVV 137
R+L +D ++V +AF LGA +L V V RVV
Sbjct: 257 RLLARLDRALDQVLDQAFELGAGQLHVEVQALRTRVV 293
>gnl|CDD|185611 PTZ00428, PTZ00428, 60S ribosomal protein L4; Provisional.
Length = 381
Score = 25.4 bits (56), Expect = 4.6
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 5/51 (9%)
Query: 70 FPDVPVTAKPTEVRMGKGKGNVEKWVCRVKPGRILFEIDGVSEEVARRAFR 120
F DV ++R GKGK ++V R P + +GV+ +AFR
Sbjct: 176 FDDVNRVNDSKKIRAGKGKMRNRRYVMRRGPLVVYANDNGVT-----KAFR 221
>gnl|CDD|181690 PRK09195, gatY, tagatose-bisphosphate aldolase; Reviewed.
Length = 284
Score = 25.5 bits (56), Expect = 5.2
Identities = 6/22 (27%), Positives = 13/22 (59%)
Query: 109 GVSEEVARRAFRLGAAKLSVVT 130
G+ + ++ +LG K++V T
Sbjct: 212 GLPTKDIQQTIKLGICKVNVAT 233
>gnl|CDD|183253 PRK11642, PRK11642, exoribonuclease R; Provisional.
Length = 813
Score = 25.1 bits (55), Expect = 5.7
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 37 AQEANRIGSSEIEAARRAISRGMKRAGRVWICVFPDVPVTAKPTEVRMGKGK 88
A E N G ++EA RR + R M+R G++ VF A P + + KG
Sbjct: 41 AVELNIEGEEQLEALRRRL-RAMERDGQL---VFTRRQCYALPERLDLLKGT 88
>gnl|CDD|106330 PRK13372, pcmA, protocatechuate 4,5-dioxygenase; Provisional.
Length = 444
Score = 25.0 bits (54), Expect = 6.8
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 6/38 (15%)
Query: 89 GNVEKWVCRVKPGRILFEIDGVSEEV--ARRAFRLGAA 124
G+ E W C V P F ++ V V RR + LG A
Sbjct: 283 GDPEAWPCPVIP----FAVNVVQYPVPSGRRCYELGQA 316
>gnl|CDD|184005 PRK13366, PRK13366, protocatechuate 4,5-dioxygenase subunit beta;
Provisional.
Length = 284
Score = 25.1 bits (55), Expect = 6.9
Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 14/52 (26%)
Query: 89 GNVEKWVCRVKPGRILFEIDGVSEEV--ARRAFRLGAAKLSVVTKFIQRVVE 138
G + W C V P F ++ V V RR F LG A I+R VE
Sbjct: 136 GQPDAWPCPVIP----FAVNVVQYPVPSGRRCFALGQA--------IRRAVE 175
>gnl|CDD|183735 PRK12771, PRK12771, putative glutamate synthase (NADPH) small
subunit; Provisional.
Length = 564
Score = 24.8 bits (55), Expect = 8.1
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 110 VSEEVARRAFRLGAAKLSVVTKF 132
+ + AR A RLGA ++++V +
Sbjct: 278 TAMDAARTARRLGAEEVTIVYRR 300
>gnl|CDD|178852 PRK00085, recO, DNA repair protein RecO; Reviewed.
Length = 247
Score = 24.8 bits (55), Expect = 8.2
Identities = 7/12 (58%), Positives = 9/12 (75%)
Query: 16 GRIKGVAKGGSR 27
GR++ VAKG R
Sbjct: 31 GRVRAVAKGARR 42
>gnl|CDD|183866 PRK13125, trpA, tryptophan synthase subunit alpha; Provisional.
Length = 244
Score = 24.6 bits (54), Expect = 8.7
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 105 FEIDGVSEEVARRAFRLGAAKLSVVTKFIQRV 136
F +D S E AR A GA + V T FI+ +
Sbjct: 192 FGLD--SPEDARDALSAGADGVVVGTAFIEEL 221
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.322 0.137 0.409
Gapped
Lambda K H
0.267 0.0750 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 2,278,516
Number of extensions: 138085
Number of successful extensions: 395
Number of sequences better than 10.0: 1
Number of HSP's gapped: 395
Number of HSP's successfully gapped: 30
Length of query: 138
Length of database: 5,994,473
Length adjustment: 84
Effective length of query: 54
Effective length of database: 4,179,401
Effective search space: 225687654
Effective search space used: 225687654
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (23.8 bits)