RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780254|ref|YP_003064667.1| 50S ribosomal protein L16 [Candidatus Liberibacter asiaticus str. psy62] (138 letters) >3bbo_O Ribosomal protein L16; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} (O:) Length = 135 Score = 128 bits (324), Expect = 2e-31 Identities = 71/135 (52%), Positives = 98/135 (72%), Gaps = 1/135 (0%) Query: 1 MLRQPKNTKYPKQFKGRIKGVAKGGSRICFGNFALKAQEANRIGSSEIEAARRAISRGMK 60 ML PK T++ KQ +GR+KG++ G+RICFG +AL+A E I S +IEA RRA++R + Sbjct: 1 ML-SPKRTRFRKQHRGRMKGISYRGNRICFGRYALQALEPAWITSRQIEAGRRAMTRNAR 59 Query: 61 RAGRVWICVFPDVPVTAKPTEVRMGKGKGNVEKWVCRVKPGRILFEIDGVSEEVARRAFR 120 R G++W+ +FPD PVT +P E RMG GKG+ E WV VKPGRIL+EI GV+E +ARRA Sbjct: 60 RGGKIWVRIFPDKPVTVRPAETRMGSGKGSPEYWVAVVKPGRILYEISGVAENIARRAVA 119 Query: 121 LGAAKLSVVTKFIQR 135 + A+K+ + T+FI Sbjct: 120 IAASKMPIRTQFIIS 134 >2zjr_J 50S ribosomal protein L16; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} (J:) Length = 142 Score = 126 bits (317), Expect = 1e-30 Identities = 72/135 (53%), Positives = 95/135 (70%) Query: 1 MLRQPKNTKYPKQFKGRIKGVAKGGSRICFGNFALKAQEANRIGSSEIEAARRAISRGMK 60 M+ PK TK+ KQF+GR+ G AKGG + FG++ L A E I S++IEA R +SR + Sbjct: 1 MMLLPKRTKFRKQFRGRMTGDAKGGDYVAFGDYGLIAMEPAWIKSNQIEACRIVMSRHFR 60 Query: 61 RAGRVWICVFPDVPVTAKPTEVRMGKGKGNVEKWVCRVKPGRILFEIDGVSEEVARRAFR 120 R G+++I +FPD PVT KP E RMGKGKG VE WV VKPGR++FE+ GV+EE A+ AFR Sbjct: 61 RGGKIYIRIFPDKPVTKKPAETRMGKGKGAVEYWVSVVKPGRVMFEVAGVTEEQAKEAFR 120 Query: 121 LGAAKLSVVTKFIQR 135 L KL + TK ++R Sbjct: 121 LAGHKLPIQTKMVKR 135 >3i1n_M 50S ribosomal protein L16; ribosome structure, protein-RNA complex, acetylation, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA- binding, methylation; 3.19A {Escherichia coli k-12} PDB: 1p85_K 1p86_K 1vs8_M 2aw4_M 2awb_M 1vs6_M 2i2v_M 2j28_M 2i2t_M* 2qao_M* 2qba_M* 2qbc_M* 2qbe_M 2qbg_M 2qbi_M* 2qbk_M* 2qov_M 2qox_M 2qoz_M* 2qp1_M* ... (M:) Length = 136 Score = 123 bits (310), Expect = 1e-29 Identities = 75/135 (55%), Positives = 102/135 (75%), Gaps = 2/135 (1%) Query: 1 MLRQPKNTKYPKQFKGRIKGVAKGGSRICFGNFALKAQEANRIGSSEIEAARRAISRGMK 60 ML QPK TK+ K KGR +G+A+G + + FG+F LKA R+ + +IEAARRA++R +K Sbjct: 1 ML-QPKRTKFRKMHKGRNRGLAQG-TDVSFGSFGLKAVGRGRLTARQIEAARRAMTRAVK 58 Query: 61 RAGRVWICVFPDVPVTAKPTEVRMGKGKGNVEKWVCRVKPGRILFEIDGVSEEVARRAFR 120 R G++WI VFPD P+T KP VRMGKGKGNVE WV ++PG++L+E+DGV EE+AR AF+ Sbjct: 59 RQGKIWIRVFPDKPITEKPLAVRMGKGKGNVEYWVALIQPGKVLYEMDGVPEELAREAFK 118 Query: 121 LGAAKLSVVTKFIQR 135 L AAKL + T F+ + Sbjct: 119 LAAAKLPIKTTFVTK 133 >1ffk_F Ribosomal protein L10E; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} (F:) Length = 157 Score = 110 bits (276), Expect = 8e-26 Identities = 19/140 (13%), Positives = 34/140 (24%), Gaps = 9/140 (6%) Query: 4 QPKNTKYPKQFKGRIKGVAKG---GSRICFGNFALKAQEANRIGSSEIEAARRAISRGM- 59 + I G ++ +I + +EAAR A +R + Sbjct: 14 YTRREYISGIPGKGIAQFKMGNNGAGPTYPAQVENVVEKPVQIRHNALEAARNAANRFVQ 73 Query: 60 ----KRAGRVWICVFPDVPVTAKPTEVRMGKGKGNVEKWVCRVKPGRILFEIDGVSEEVA 115 + I FP + + M G R F + Sbjct: 74 NSGAAANYKFRIRKFPFHVIR-EQDGDGMRAPFGKSVGTAARSHGANHDFIAWVNPDPAV 132 Query: 116 RRAFRLGAAKLSVVTKFIQR 135 A+R K++ Sbjct: 133 EFAWRRAYMKVTPTVNIDSS 152 >2zkr_h 60S ribosomal protein L10; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} PDB: 1s1i_I (h:) Length = 214 Score = 106 bits (267), Expect = 8e-25 Identities = 27/152 (17%), Positives = 46/152 (30%), Gaps = 20/152 (13%) Query: 4 QPKNTKYPKQFKGRIKGVAKGGSRICFGNFALKAQ----EANRIGSSEIEAARRAISRGM 59 PK+ +I+ G + F L E ++ S +EAAR ++ M Sbjct: 17 YPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLCGHMVSDEYEQLSSEALEAARICANKYM 76 Query: 60 -----KRAGRVWICVFPDVP---------VTAKPTEVRMGKGKGNVEKWVCRVKPGRILF 105 K + + + P A + M G + V +V G+++ Sbjct: 77 VKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVAKVHIGQVIM 136 Query: 106 EIDGVSE--EVARRAFRLGAAKLSVVTKFIQR 135 I + E A R K K Sbjct: 137 SIRTKLQNKEHVIEALRRAKFKFPGRQKIHIS 168 >1vq8_H 50S ribosomal protein L10E; ribosome 50S, protein-protein complex, RNA-RNA complex, protein-RNA complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} (H:) Length = 171 Score = 103 bits (258), Expect = 9e-24 Identities = 22/153 (14%), Positives = 46/153 (30%), Gaps = 21/153 (13%) Query: 4 QPKNTKYPKQFKGRIKGVAKGGSRICFGNF----ALKAQEANRIGSSEIEAARRAISRGM 59 + +I G + ++ +L +E ++ +EA+R + +R + Sbjct: 14 YTRREYITGIPGSKIAQHKMGRKQKDADDYPVQISLIVEETVQLRHGSLEASRLSANRHL 73 Query: 60 K------RAGRVWICVFPDVPVTAKPT---------EVRMGKGKGNVEKWVCRVKPGRIL 104 ++ + FP + M G + RV+ G L Sbjct: 74 IKELGEEGDYKMTLRKFPHQVLRENKQATGAGADRVSDGMRAAFGKIVGTAARVQAGEQL 133 Query: 105 FEIDGV--SEEVARRAFRLGAAKLSVVTKFIQR 135 F E + AFR K++ + Sbjct: 134 FTAYCNVEDAEHVKEAFRRAYNKITPSCRIDSS 166 >2ftc_I Mitochondrial ribosomal protein L16, 39S ribosomal protein L13, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal RNA; 12.10A {Bos taurus} PDB: 3iy9_I (I:) Length = 118 Score = 100 bits (250), Expect = 7e-23 Identities = 37/117 (31%), Positives = 52/117 (44%), Gaps = 3/117 (2%) Query: 18 IKGVAKGGSRICFGNFALKAQEANRIGSSEIEAARRAISRGM--KRAGRVWICVFPDVPV 75 I+G + + GNFA+ A + E R I+R M K +W P P+ Sbjct: 2 IRGPSTEATEFTEGNFAILALGGGYLHWGHFEMMRLTINRSMDPKNMFAIWRVPAPFKPI 61 Query: 76 TAKPTEVRMGKGKGNVEKWVCRVKPGRILFEIDGVSE-EVARRAFRLGAAKLSVVTK 131 T K RMG GKG ++ +V VK GR++ E+ G E E + A KL K Sbjct: 62 TRKSVGHRMGGGKGAIDHYVTPVKAGRLVVEMGGRCEFEEVQGFLDQVAHKLPFAAK 118 >2pa2_A 60S ribosomal protein L10; QM protein, , structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.50A {Homo sapiens} (A:) Length = 151 Score = 100 bits (250), Expect = 8e-23 Identities = 23/133 (17%), Positives = 38/133 (28%), Gaps = 16/133 (12%) Query: 19 KGVAKGGSRICFGNFALKAQEANRIGSSEIEAARRAISRGM-----KRAGRVWI------ 67 G K + + E ++ S +EAAR ++ M K + + Sbjct: 5 LGRKKAKVDEFPLCGHMVSDEYEQLSSEALEAARICANKYMVKSCGKDGFHIRVRLHPFH 64 Query: 68 ---CVFPDVPVTAKPTEVRMGKGKGNVEKWVCRVKPGRILFEIDGVSE--EVARRAFRLG 122 A + M G + V RV G+++ I + E A R Sbjct: 65 VIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRA 124 Query: 123 AAKLSVVTKFIQR 135 K K Sbjct: 125 KFKFPGRQKIHIS 137 >2qsx_A Putative transcriptional regulator, LYSR family; the putative transcriptional regulator, PSI-2; 1.64A {Vibrio parahaemolyticus rimd 2210633} (A:) Length = 218 Score = 25.5 bits (54), Expect = 2.8 Identities = 5/29 (17%), Positives = 12/29 (41%) Query: 45 SSEIEAARRAISRGMKRAGRVWICVFPDV 73 S+ I+ A ++ + + + V P Sbjct: 1 SNAIQHATASLIQTNTDQELLVVDVTPSF 29 >2rgx_A Adenylate kinase; transferase(phosphotransferase), ATP-binding, cytoplasm, nucleotide-binding; HET: AP5; 1.90A {Aquifex aeolicus} PDB: 2rh5_A (A:1-112,A:171-206) Length = 148 Score = 25.0 bits (54), Expect = 3.9 Identities = 6/33 (18%), Positives = 13/33 (39%), Gaps = 1/33 (3%) Query: 44 GSSEIEAARRAISRGMKRAGR-VWICVFPDVPV 75 G A+ +++ G V + +VP+ Sbjct: 82 GFPRTVKQAEALDEMLEKKGLKVDHVLLFEVPL 114 >2isw_A Putative fructose-1,6-bisphosphate aldolase; class II fructose-1,6-bisphosphate aldolase, glycolytic pathway, giardia lamblia, drug target; HET: PGH; 1.75A {Giardia intestinalis} PDB: 2isv_A* 3gay_A* 3gak_A* 3gb6_A* (A:) Length = 323 Score = 24.9 bits (54), Expect = 4.5 Identities = 9/50 (18%), Positives = 16/50 (32%), Gaps = 1/50 (2%) Query: 84 MGKGKGNVEKWVCRVKP-GRILFEIDGVSEEVARRAFRLGAAKLSVVTKF 132 M + + G + + GV E A G K++V + Sbjct: 209 MHGSSSVPKDVKDMINKYGGKMPDAVGVPIESIVHAIGEGVCKINVDSDS 258 >1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} (A:561-727,A:799-842) Length = 211 Score = 24.3 bits (52), Expect = 6.6 Identities = 21/88 (23%), Positives = 28/88 (31%), Gaps = 13/88 (14%) Query: 12 KQFKGRIKGVAKGGSRICFGNFALKAQEANRIGSSEIEAARRAISRGMKRAGRV------ 65 +G I G R+ + L A +R G I RRA G A Sbjct: 110 ATKEGPIFGEEMRSVRVNILDVTLHADAIHRGGGQIIPTMRRATYAGFLLADPKIQEPDH 169 Query: 66 WICVFPDVPV--TAKPTEV----RMGKG 87 W P+ T+K E+ R G Sbjct: 170 W-STLGSDPLDPTSKAGEIVLAARKRHG 196 >3bn4_A Carbon dioxide-concentrating mechanism protein CCMK homolog 1; hexamer, structural protein; 2.00A {Synechocystis SP} (A:) Length = 122 Score = 24.1 bits (52), Expect = 7.5 Identities = 7/39 (17%), Positives = 17/39 (43%) Query: 43 IGSSEIEAARRAISRGMKRAGRVWICVFPDVPVTAKPTE 81 I ++ + +++ G++ RV + A+P E Sbjct: 45 IVRGDVSEVQASVTAGIENIRRVNGGEVLSNHIIARPHE 83 >1rvg_A Fructose-1,6-bisphosphate aldolase; class II aldolase, metal-depdendent aldolase, lyase; 2.00A {Thermus aquaticus} (A:) Length = 305 Score = 23.8 bits (51), Expect = 9.7 Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 1/53 (1%) Query: 79 PTEVRMGKGKGNVEKWVCRVKP-GRILFEIDGVSEEVARRAFRLGAAKLSVVT 130 P + + + V R + G + E G+ E ++A LG AK++ T Sbjct: 202 PAPLVLHGASAVPPELVERFRASGGEIGEAAGIHPEDIKKAISLGIAKINTDT 254 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.322 0.137 0.409 Gapped Lambda K H 0.267 0.0562 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 1,075,619 Number of extensions: 47572 Number of successful extensions: 189 Number of sequences better than 10.0: 1 Number of HSP's gapped: 176 Number of HSP's successfully gapped: 24 Length of query: 138 Length of database: 4,956,049 Length adjustment: 80 Effective length of query: 58 Effective length of database: 2,251,649 Effective search space: 130595642 Effective search space used: 130595642 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 50 (23.4 bits)