RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254780254|ref|YP_003064667.1| 50S ribosomal protein L16
[Candidatus Liberibacter asiaticus str. psy62]
(138 letters)
>3bbo_O Ribosomal protein L16; large ribosomal subunit, spinach
chloroplast ribosome, ribonucleoprotein particle,
macromolecular complex; 9.40A {Spinacea oleracea} (O:)
Length = 135
Score = 128 bits (324), Expect = 2e-31
Identities = 71/135 (52%), Positives = 98/135 (72%), Gaps = 1/135 (0%)
Query: 1 MLRQPKNTKYPKQFKGRIKGVAKGGSRICFGNFALKAQEANRIGSSEIEAARRAISRGMK 60
ML PK T++ KQ +GR+KG++ G+RICFG +AL+A E I S +IEA RRA++R +
Sbjct: 1 ML-SPKRTRFRKQHRGRMKGISYRGNRICFGRYALQALEPAWITSRQIEAGRRAMTRNAR 59
Query: 61 RAGRVWICVFPDVPVTAKPTEVRMGKGKGNVEKWVCRVKPGRILFEIDGVSEEVARRAFR 120
R G++W+ +FPD PVT +P E RMG GKG+ E WV VKPGRIL+EI GV+E +ARRA
Sbjct: 60 RGGKIWVRIFPDKPVTVRPAETRMGSGKGSPEYWVAVVKPGRILYEISGVAENIARRAVA 119
Query: 121 LGAAKLSVVTKFIQR 135
+ A+K+ + T+FI
Sbjct: 120 IAASKMPIRTQFIIS 134
>2zjr_J 50S ribosomal protein L16; ribosome, large ribosomal
subunit, ribonucleoprotein, RNA-binding, rRNA-binding,
tRNA-binding, methylation; 2.91A {Deinococcus
radiodurans} (J:)
Length = 142
Score = 126 bits (317), Expect = 1e-30
Identities = 72/135 (53%), Positives = 95/135 (70%)
Query: 1 MLRQPKNTKYPKQFKGRIKGVAKGGSRICFGNFALKAQEANRIGSSEIEAARRAISRGMK 60
M+ PK TK+ KQF+GR+ G AKGG + FG++ L A E I S++IEA R +SR +
Sbjct: 1 MMLLPKRTKFRKQFRGRMTGDAKGGDYVAFGDYGLIAMEPAWIKSNQIEACRIVMSRHFR 60
Query: 61 RAGRVWICVFPDVPVTAKPTEVRMGKGKGNVEKWVCRVKPGRILFEIDGVSEEVARRAFR 120
R G+++I +FPD PVT KP E RMGKGKG VE WV VKPGR++FE+ GV+EE A+ AFR
Sbjct: 61 RGGKIYIRIFPDKPVTKKPAETRMGKGKGAVEYWVSVVKPGRVMFEVAGVTEEQAKEAFR 120
Query: 121 LGAAKLSVVTKFIQR 135
L KL + TK ++R
Sbjct: 121 LAGHKLPIQTKMVKR 135
>3i1n_M 50S ribosomal protein L16; ribosome structure, protein-RNA
complex, acetylation, ribonucleoprotein, ribosomal
protein, RNA-binding, rRNA- binding, methylation; 3.19A
{Escherichia coli k-12} PDB: 1p85_K 1p86_K 1vs8_M 2aw4_M
2awb_M 1vs6_M 2i2v_M 2j28_M 2i2t_M* 2qao_M* 2qba_M*
2qbc_M* 2qbe_M 2qbg_M 2qbi_M* 2qbk_M* 2qov_M 2qox_M
2qoz_M* 2qp1_M* ... (M:)
Length = 136
Score = 123 bits (310), Expect = 1e-29
Identities = 75/135 (55%), Positives = 102/135 (75%), Gaps = 2/135 (1%)
Query: 1 MLRQPKNTKYPKQFKGRIKGVAKGGSRICFGNFALKAQEANRIGSSEIEAARRAISRGMK 60
ML QPK TK+ K KGR +G+A+G + + FG+F LKA R+ + +IEAARRA++R +K
Sbjct: 1 ML-QPKRTKFRKMHKGRNRGLAQG-TDVSFGSFGLKAVGRGRLTARQIEAARRAMTRAVK 58
Query: 61 RAGRVWICVFPDVPVTAKPTEVRMGKGKGNVEKWVCRVKPGRILFEIDGVSEEVARRAFR 120
R G++WI VFPD P+T KP VRMGKGKGNVE WV ++PG++L+E+DGV EE+AR AF+
Sbjct: 59 RQGKIWIRVFPDKPITEKPLAVRMGKGKGNVEYWVALIQPGKVLYEMDGVPEELAREAFK 118
Query: 121 LGAAKLSVVTKFIQR 135
L AAKL + T F+ +
Sbjct: 119 LAAAKLPIKTTFVTK 133
>1ffk_F Ribosomal protein L10E; ribosome assembly, RNA-RNA,
protein-RNA, protein-protein; 2.40A {Haloarcula
marismortui} (F:)
Length = 157
Score = 110 bits (276), Expect = 8e-26
Identities = 19/140 (13%), Positives = 34/140 (24%), Gaps = 9/140 (6%)
Query: 4 QPKNTKYPKQFKGRIKGVAKG---GSRICFGNFALKAQEANRIGSSEIEAARRAISRGM- 59
+ I G ++ +I + +EAAR A +R +
Sbjct: 14 YTRREYISGIPGKGIAQFKMGNNGAGPTYPAQVENVVEKPVQIRHNALEAARNAANRFVQ 73
Query: 60 ----KRAGRVWICVFPDVPVTAKPTEVRMGKGKGNVEKWVCRVKPGRILFEIDGVSEEVA 115
+ I FP + + M G R F +
Sbjct: 74 NSGAAANYKFRIRKFPFHVIR-EQDGDGMRAPFGKSVGTAARSHGANHDFIAWVNPDPAV 132
Query: 116 RRAFRLGAAKLSVVTKFIQR 135
A+R K++
Sbjct: 133 EFAWRRAYMKVTPTVNIDSS 152
>2zkr_h 60S ribosomal protein L10; protein-RNA complex, 60S
ribosomal subunit, ribosomal protein/RNA complex; 8.70A
{Canis familiaris} PDB: 1s1i_I (h:)
Length = 214
Score = 106 bits (267), Expect = 8e-25
Identities = 27/152 (17%), Positives = 46/152 (30%), Gaps = 20/152 (13%)
Query: 4 QPKNTKYPKQFKGRIKGVAKGGSRICFGNFALKAQ----EANRIGSSEIEAARRAISRGM 59
PK+ +I+ G + F L E ++ S +EAAR ++ M
Sbjct: 17 YPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLCGHMVSDEYEQLSSEALEAARICANKYM 76
Query: 60 -----KRAGRVWICVFPDVP---------VTAKPTEVRMGKGKGNVEKWVCRVKPGRILF 105
K + + + P A + M G + V +V G+++
Sbjct: 77 VKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVAKVHIGQVIM 136
Query: 106 EIDGVSE--EVARRAFRLGAAKLSVVTKFIQR 135
I + E A R K K
Sbjct: 137 SIRTKLQNKEHVIEALRRAKFKFPGRQKIHIS 168
>1vq8_H 50S ribosomal protein L10E; ribosome 50S, protein-protein
complex, RNA-RNA complex, protein-RNA complex, peptidyl
transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS;
2.20A {Haloarcula marismortui} (H:)
Length = 171
Score = 103 bits (258), Expect = 9e-24
Identities = 22/153 (14%), Positives = 46/153 (30%), Gaps = 21/153 (13%)
Query: 4 QPKNTKYPKQFKGRIKGVAKGGSRICFGNF----ALKAQEANRIGSSEIEAARRAISRGM 59
+ +I G + ++ +L +E ++ +EA+R + +R +
Sbjct: 14 YTRREYITGIPGSKIAQHKMGRKQKDADDYPVQISLIVEETVQLRHGSLEASRLSANRHL 73
Query: 60 K------RAGRVWICVFPDVPVTAKPT---------EVRMGKGKGNVEKWVCRVKPGRIL 104
++ + FP + M G + RV+ G L
Sbjct: 74 IKELGEEGDYKMTLRKFPHQVLRENKQATGAGADRVSDGMRAAFGKIVGTAARVQAGEQL 133
Query: 105 FEIDGV--SEEVARRAFRLGAAKLSVVTKFIQR 135
F E + AFR K++ +
Sbjct: 134 FTAYCNVEDAEHVKEAFRRAYNKITPSCRIDSS 166
>2ftc_I Mitochondrial ribosomal protein L16, 39S ribosomal protein
L13, mitochondrial; mitochondrial ribosome, large
ribosomal subunit, ribosomal RNA; 12.10A {Bos taurus}
PDB: 3iy9_I (I:)
Length = 118
Score = 100 bits (250), Expect = 7e-23
Identities = 37/117 (31%), Positives = 52/117 (44%), Gaps = 3/117 (2%)
Query: 18 IKGVAKGGSRICFGNFALKAQEANRIGSSEIEAARRAISRGM--KRAGRVWICVFPDVPV 75
I+G + + GNFA+ A + E R I+R M K +W P P+
Sbjct: 2 IRGPSTEATEFTEGNFAILALGGGYLHWGHFEMMRLTINRSMDPKNMFAIWRVPAPFKPI 61
Query: 76 TAKPTEVRMGKGKGNVEKWVCRVKPGRILFEIDGVSE-EVARRAFRLGAAKLSVVTK 131
T K RMG GKG ++ +V VK GR++ E+ G E E + A KL K
Sbjct: 62 TRKSVGHRMGGGKGAIDHYVTPVKAGRLVVEMGGRCEFEEVQGFLDQVAHKLPFAAK 118
>2pa2_A 60S ribosomal protein L10; QM protein, , structural
genomics, NPPSFA, national project on protein structural
and functional analyses; 2.50A {Homo sapiens} (A:)
Length = 151
Score = 100 bits (250), Expect = 8e-23
Identities = 23/133 (17%), Positives = 38/133 (28%), Gaps = 16/133 (12%)
Query: 19 KGVAKGGSRICFGNFALKAQEANRIGSSEIEAARRAISRGM-----KRAGRVWI------ 67
G K + + E ++ S +EAAR ++ M K + +
Sbjct: 5 LGRKKAKVDEFPLCGHMVSDEYEQLSSEALEAARICANKYMVKSCGKDGFHIRVRLHPFH 64
Query: 68 ---CVFPDVPVTAKPTEVRMGKGKGNVEKWVCRVKPGRILFEIDGVSE--EVARRAFRLG 122
A + M G + V RV G+++ I + E A R
Sbjct: 65 VIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRA 124
Query: 123 AAKLSVVTKFIQR 135
K K
Sbjct: 125 KFKFPGRQKIHIS 137
>2qsx_A Putative transcriptional regulator, LYSR family; the
putative transcriptional regulator, PSI-2; 1.64A
{Vibrio parahaemolyticus rimd 2210633} (A:)
Length = 218
Score = 25.5 bits (54), Expect = 2.8
Identities = 5/29 (17%), Positives = 12/29 (41%)
Query: 45 SSEIEAARRAISRGMKRAGRVWICVFPDV 73
S+ I+ A ++ + + + V P
Sbjct: 1 SNAIQHATASLIQTNTDQELLVVDVTPSF 29
>2rgx_A Adenylate kinase; transferase(phosphotransferase),
ATP-binding, cytoplasm, nucleotide-binding; HET: AP5;
1.90A {Aquifex aeolicus} PDB: 2rh5_A (A:1-112,A:171-206)
Length = 148
Score = 25.0 bits (54), Expect = 3.9
Identities = 6/33 (18%), Positives = 13/33 (39%), Gaps = 1/33 (3%)
Query: 44 GSSEIEAARRAISRGMKRAGR-VWICVFPDVPV 75
G A+ +++ G V + +VP+
Sbjct: 82 GFPRTVKQAEALDEMLEKKGLKVDHVLLFEVPL 114
>2isw_A Putative fructose-1,6-bisphosphate aldolase; class II
fructose-1,6-bisphosphate aldolase, glycolytic pathway,
giardia lamblia, drug target; HET: PGH; 1.75A {Giardia
intestinalis} PDB: 2isv_A* 3gay_A* 3gak_A* 3gb6_A* (A:)
Length = 323
Score = 24.9 bits (54), Expect = 4.5
Identities = 9/50 (18%), Positives = 16/50 (32%), Gaps = 1/50 (2%)
Query: 84 MGKGKGNVEKWVCRVKP-GRILFEIDGVSEEVARRAFRLGAAKLSVVTKF 132
M + + G + + GV E A G K++V +
Sbjct: 209 MHGSSSVPKDVKDMINKYGGKMPDAVGVPIESIVHAIGEGVCKINVDSDS 258
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline,
translation; HET: SO1; 2.12A {Saccharomyces cerevisiae}
(A:561-727,A:799-842)
Length = 211
Score = 24.3 bits (52), Expect = 6.6
Identities = 21/88 (23%), Positives = 28/88 (31%), Gaps = 13/88 (14%)
Query: 12 KQFKGRIKGVAKGGSRICFGNFALKAQEANRIGSSEIEAARRAISRGMKRAGRV------ 65
+G I G R+ + L A +R G I RRA G A
Sbjct: 110 ATKEGPIFGEEMRSVRVNILDVTLHADAIHRGGGQIIPTMRRATYAGFLLADPKIQEPDH 169
Query: 66 WICVFPDVPV--TAKPTEV----RMGKG 87
W P+ T+K E+ R G
Sbjct: 170 W-STLGSDPLDPTSKAGEIVLAARKRHG 196
>3bn4_A Carbon dioxide-concentrating mechanism protein CCMK
homolog 1; hexamer, structural protein; 2.00A
{Synechocystis SP} (A:)
Length = 122
Score = 24.1 bits (52), Expect = 7.5
Identities = 7/39 (17%), Positives = 17/39 (43%)
Query: 43 IGSSEIEAARRAISRGMKRAGRVWICVFPDVPVTAKPTE 81
I ++ + +++ G++ RV + A+P E
Sbjct: 45 IVRGDVSEVQASVTAGIENIRRVNGGEVLSNHIIARPHE 83
>1rvg_A Fructose-1,6-bisphosphate aldolase; class II aldolase,
metal-depdendent aldolase, lyase; 2.00A {Thermus
aquaticus} (A:)
Length = 305
Score = 23.8 bits (51), Expect = 9.7
Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Query: 79 PTEVRMGKGKGNVEKWVCRVKP-GRILFEIDGVSEEVARRAFRLGAAKLSVVT 130
P + + + V R + G + E G+ E ++A LG AK++ T
Sbjct: 202 PAPLVLHGASAVPPELVERFRASGGEIGEAAGIHPEDIKKAISLGIAKINTDT 254
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.322 0.137 0.409
Gapped
Lambda K H
0.267 0.0562 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,075,619
Number of extensions: 47572
Number of successful extensions: 189
Number of sequences better than 10.0: 1
Number of HSP's gapped: 176
Number of HSP's successfully gapped: 24
Length of query: 138
Length of database: 4,956,049
Length adjustment: 80
Effective length of query: 58
Effective length of database: 2,251,649
Effective search space: 130595642
Effective search space used: 130595642
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.4 bits)