RPS-BLAST 2.2.22 [Sep-27-2009]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= gi|254780254|ref|YP_003064667.1| 50S ribosomal protein L16
[Candidatus Liberibacter asiaticus str. psy62]
(138 letters)
>d2gyck1 d.41.4.2 (K:3-133) Ribosomal protein L16p {Escherichia coli
[TaxId: 562]}
Length = 131
Score = 154 bits (392), Expect = 2e-39
Identities = 73/132 (55%), Positives = 100/132 (75%), Gaps = 1/132 (0%)
Query: 4 QPKNTKYPKQFKGRIKGVAKGGSRICFGNFALKAQEANRIGSSEIEAARRAISRGMKRAG 63
QPK TK+ K KGR +G+A+G + + FG+F LKA R+ + +IEAARRA++R +KR G
Sbjct: 1 QPKRTKFRKMHKGRNRGLAQG-TDVSFGSFGLKAVGRGRLTARQIEAARRAMTRAVKRQG 59
Query: 64 RVWICVFPDVPVTAKPTEVRMGKGKGNVEKWVCRVKPGRILFEIDGVSEEVARRAFRLGA 123
++WI VFPD P+T KP VRMGKGKGNVE WV ++PG++L+E+DGV EE+AR AF+L A
Sbjct: 60 KIWIRVFPDKPITEKPLAVRMGKGKGNVEYWVALIQPGKVLYEMDGVPEELAREAFKLAA 119
Query: 124 AKLSVVTKFIQR 135
AKL + T F+ +
Sbjct: 120 AKLPIKTTFVTK 131
>d2j01q1 d.41.4.2 (Q:6-141) Ribosomal protein L16p {Thermus
thermophilus [TaxId: 274]}
Length = 136
Score = 152 bits (385), Expect = 1e-38
Identities = 66/128 (51%), Positives = 88/128 (68%)
Query: 8 TKYPKQFKGRIKGVAKGGSRICFGNFALKAQEANRIGSSEIEAARRAISRGMKRAGRVWI 67
KY KQ +GR+KG KGG + FG++ L A E I + +IEAAR A+ R +R G+++I
Sbjct: 2 MKYRKQQRGRLKGATKGGDYVAFGDYGLVALEPAWITAQQIEAARVAMVRHFRRGGKIFI 61
Query: 68 CVFPDVPVTAKPTEVRMGKGKGNVEKWVCRVKPGRILFEIDGVSEEVARRAFRLGAAKLS 127
+FPD P T KP EVRMGKGKGNVE +V VKPGR++FE+ GV+EE A A R+ KL
Sbjct: 62 RIFPDKPYTKKPLEVRMGKGKGNVEGYVAVVKPGRVMFEVAGVTEEQAMEALRIAGHKLP 121
Query: 128 VVTKFIQR 135
+ TK ++R
Sbjct: 122 IKTKIVRR 129
>d1jj2h_ d.41.4.1 (H:) Ribosomal protein L10e {Archaeon Haloarcula
marismortui [TaxId: 2238]}
Length = 167
Score = 95.3 bits (237), Expect = 2e-21
Identities = 24/160 (15%), Positives = 45/160 (28%), Gaps = 27/160 (16%)
Query: 1 MLRQPKNTKYPKQFKGRIKGVA-------KGGSRICFGNFAL----KAQEANRIGSSEIE 49
M R Y + + I G+ G+ + ++ +I + +E
Sbjct: 5 MYRNSSKPAYTR--REYISGIPGKKIAQFDMGNNGAGPTYPAQVELVVEKPVQIRHNALE 62
Query: 50 AARRAISRGMKRA-----GRVWICVFPDVPVTAKPT---------EVRMGKGKGNVEKWV 95
AAR A +R ++ + + I FP + M G
Sbjct: 63 AARVAANRYVQNSGAAANYKFRIRKFPFHVIRENKAAAAAAAAAAADGMRAPFGKPVGTA 122
Query: 96 CRVKPGRILFEIDGVSEEVARRAFRLGAAKLSVVTKFIQR 135
RV +F + A+R K++
Sbjct: 123 ARVHGANHIFIAWVNPDPNVEEAWRRAKMKVTPTINIDSS 162
>d1vqoh1 d.41.4.1 (H:1-163) Ribosomal protein L10e {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 163
Score = 91.8 bits (228), Expect = 2e-20
Identities = 28/160 (17%), Positives = 53/160 (33%), Gaps = 31/160 (19%)
Query: 1 MLRQPKNTKYPKQFKGRIKGV--------AKGGSRICFGNF----ALKAQEANRIGSSEI 48
M R Y + + I G+ G + ++ +L +E ++ +
Sbjct: 5 MYRDIDKPAYTR--REYITGIPGSKIAQHKMGRKQKDADDYPVQISLIVEETVQLRHGSL 62
Query: 49 EAARRAISR------GMKRAGRVWICVFPDVPVTAKPT---------EVRMGKGKGNVEK 93
EA+R + +R G + ++ + FP + M G +
Sbjct: 63 EASRLSANRHLIKELGEEGDYKMTLRKFPHQVLRENKQATGAGADRVSDGMRAAFGKIVG 122
Query: 94 WVCRVKPGRILFEIDGVSE--EVARRAFRLGAAKLSVVTK 131
RV+ G LF E E + AFR K++ +
Sbjct: 123 TAARVQAGEQLFTAYCNVEDAEHVKEAFRRAYNKITPSCR 162
>d2pa2a1 d.41.4.1 (A:40-176) Ribosomal protein L10e {Human (Homo
sapiens) [TaxId: 9606]}
Length = 137
Score = 89.5 bits (222), Expect = 9e-20
Identities = 20/115 (17%), Positives = 37/115 (32%), Gaps = 16/115 (13%)
Query: 35 LKAQEANRIGSSEIEAARRAISRGMK-----RAGRVWICVFPDVPVTAKPTEVRMG---- 85
+ + E ++ S +EAAR ++ M + + + P + G
Sbjct: 13 MVSDEYEQLSSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRL 72
Query: 86 -----KGKGNVEKWVCRVKPGRILFEIDGV--SEEVARRAFRLGAAKLSVVTKFI 133
G + V RV G+++ I ++E A R K K
Sbjct: 73 QTGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIH 127
>d1tk9a_ c.80.1.3 (A:) Phosphoheptose isomerase GmhA1
{Campylobacter jejuni [TaxId: 197]}
Length = 188
Score = 25.5 bits (55), Expect = 1.8
Identities = 8/33 (24%), Positives = 16/33 (48%)
Query: 36 KAQEANRIGSSEIEAARRAISRGMKRAGRVWIC 68
K +A+ I +I + +K+ G++ IC
Sbjct: 16 KIVQASEILKGQIAKVGELLCECLKKGGKILIC 48
>d1ez0a_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH
{Vibrio harveyi [TaxId: 669]}
Length = 504
Score = 25.1 bits (53), Expect = 2.6
Identities = 5/23 (21%), Positives = 9/23 (39%)
Query: 45 SSEIEAARRAISRGMKRAGRVWI 67
+ + I R + AGR+
Sbjct: 409 EEDYPQVSQLIPRLEEIAGRLVF 431
>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum
[TaxId: 44689]}
Length = 306
Score = 24.4 bits (52), Expect = 3.8
Identities = 11/73 (15%), Positives = 27/73 (36%), Gaps = 6/73 (8%)
Query: 72 DVPVTAKPTEVRMGKGKG-----NVEKWVCRV-KPGRILFEIDGVSEEVARRAFRLGAAK 125
VT +P +++ ++W + KP + ++ + EE+ R R+
Sbjct: 54 SGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREEIIRDTDRMTGKN 113
Query: 126 LSVVTKFIQRVVE 138
+ + I +
Sbjct: 114 KGISAQPINLKIY 126
>d1hw1a2 a.78.1.1 (A:79-230) Fatty acid responsive transcription
factor FadR, C-terminal domain {Escherichia coli [TaxId:
562]}
Length = 152
Score = 24.2 bits (51), Expect = 4.1
Identities = 3/26 (11%), Positives = 7/26 (26%)
Query: 41 NRIGSSEIEAARRAISRGMKRAGRVW 66
+ + R +G +W
Sbjct: 120 ALCSEGAHDQVYETVRRYGHESGEIW 145
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.137 0.409
Gapped
Lambda K H
0.267 0.0621 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 521,827
Number of extensions: 23621
Number of successful extensions: 108
Number of sequences better than 10.0: 1
Number of HSP's gapped: 98
Number of HSP's successfully gapped: 16
Length of query: 138
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 62
Effective length of database: 1,364,116
Effective search space: 84575192
Effective search space used: 84575192
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (22.5 bits)