HHsearch alignment for GI: 254780255 and conserved domain: COG1847
>COG1847 Jag Predicted RNA-binding protein [General function prediction only].
Probab=95.98 E-value=0.045 Score=31.93 Aligned_cols=103 Identities=17% Similarity=0.280 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHHCCCC-CEEEEECCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCC------EEEEEEEEECCC
Q ss_conf 99999999877422642-21553258851899997374100135653489989876403587------057879981375
Q gi|254780255|r 37 LKIREYLQCHLKQAGVA-KILIERTHKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNS------EIHLSVNEVPKP 109 (227)
Q Consensus 37 ~~IR~fi~k~l~~agis-~i~I~Rt~~~i~I~I~~~kP~~iiGkkg~~i~~l~~~L~~~~~~------~v~i~v~ei~~p 109 (227)
T Consensus 65 ~~~~~~L~ell~~m~~~~~i~v~~~~~~v~~~i~~~~~~~LIG~~Gk~LdALQ~L~n~~l~~~~g~~~~v~ldv~~yRer 144 (208)
T COG1847 65 QEAKDYLEELLELMDFEVTITVSEEGRRVVVSIEGEDAGRLIGKHGKTLDALQYLANLYLNKIGGKFKRVTLDVGDYRER 144 (208)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEEECCCEEEEEECCCCHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHH
T ss_conf 99999999999983986599996247579999448861023036774017999999998535059615899982068999
Q ss_pred -CCCHHHHHHHHHHHH-HCCCH---------HHHHHHHHHH
Q ss_conf -533778799999998-75963---------6899999999
Q gi|254780255|r 110 -EINATLIAQSIAQQL-ERRVV---------FRRAMKRAVQ 139 (227)
Q Consensus 110 -~~~A~~iA~~Ia~~L-ekr~~---------fRr~~k~~i~ 139 (227)
T Consensus 145 R~e~L~~LA~~~A~rV~~tg~~v~L~pM~~~ERkIVH~~l~ 185 (208)
T COG1847 145 RKETLIKLAERAAERVLETGRSVELEPMPPFERKIVHTALS 185 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHCCEEECCCCCHHHHHHHHHHHH
T ss_conf 99999999999999998509905647898788899999997